Prupe.3G132300_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010947
Physical Location & Seq
Forward (+)
13726172 .. 13727293
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G132300.1

Sequence Viewer

Length: 504 bp
ATGGCAGATACAACAGAAGATGAGCAAGAAACACCGCCGCCGCGATCATATTACATGATGTTTTTAACAACTATGAGCAAAAGGAGAACATGGGTATGTCTATTTGTGTTAGTTTATGCCATCCTTTTAACTTCTTTATGGAATTTCCTCAAATCCATACTGTCTTGGTATGAATTGCAAGCCCAACCTTCTGCCTCATCATATGGGTGGCCTGCCCTTTATGCCTCGGTGCTTCTTGGGGCAGTTTTTGGGCTGCTTTCCATGTTTGCAGCTCTTGCAGTCGTGGTGCCTGCCACTTTGGTCACCTGGATCACTATCGTGGTCATGCTGGCCTTCTTTGGGAAGCCTAGGAGTACTTTGGTTGTGGAGGGGAGGAAGATTACAAGAGAGATTTTTGGGATTGTGATCAGGATTTTGTTGAAGGAAGGCAATTTGGTGGCTGCTGCTTGTGCTGTTTTGGGGTATTTTGCGCTTTTTAGGAGGAGTTCTGAGGTGATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.72

Weight (kDa)

8.97

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 43
AciI CCGC 3 cut(s) 35, 38, 41
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 305
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 317
AoxI GGCC 2 cut(s) 209, 330
ApeKI GCWGC 4 cut(s) 253, 269, 440, 443
ApoI RAATTY 1 cut(s) 142
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 295
AvrII CCTAGG 1 cut(s) 347
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 4 cut(s) 240, 281, 427, 430
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 1 cut(s) 405
BfaI CTAG 1 cut(s) 348
BisI GCNGC 6 cut(s) 38, 41, 254, 270, 441, 444
BlnI CCTAGG 1 cut(s) 347
BlsI GCNGC 6 cut(s) 39, 42, 255, 271, 442, 445
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 307
BsaBI GATNNNNATC 2 cut(s) 314, 404
BsaJI CCNNGG 2 cut(s) 225, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 314, 404
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 225, 347
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 2 cut(s) 314, 404
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 496
BseXI GCAGC 4 cut(s) 240, 281, 427, 430
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 211, 332
BshNI GGYRCC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 2 cut(s) 211, 332
Bsp143I GATC 4 cut(s) 44, 309, 405, 495
BspACI CCGC 3 cut(s) 35, 38, 41
BspANI GGCC 2 cut(s) 211, 332
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 225, 347
BssMI GATC 4 cut(s) 44, 309, 405, 495
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 180, 213, 291, 330
BstDEI CTNAG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 4 cut(s) 47, 312, 408, 498
BstMBI GATC 4 cut(s) 44, 309, 405, 495
BstMWI GCNNNNNNNGC 3 cut(s) 221, 275, 449
BstNI CCWGG 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 240, 281, 427, 430
BsuRI GGCC 2 cut(s) 211, 332
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 4 cut(s) 180, 213, 291, 330
CfoI GCGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 354
CviAII CATG 4 cut(s) 55, 90, 262, 325
CviJI RGCY 7 cut(s) 182, 211, 253, 272, 332, 346, 440
CviKI_1 RGCY 7 cut(s) 182, 211, 253, 272, 332, 346, 440
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 489
DpnI GATC 4 cut(s) 46, 311, 407, 497
DpnII GATC 4 cut(s) 44, 309, 405, 495
Eco130I CCWWGG 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 4 cut(s) 58, 93, 265, 328
FatI CATG 4 cut(s) 54, 89, 261, 324
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 38, 41, 254, 270, 441, 444
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 6 cut(s) 38, 41, 254, 270, 441, 444
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 471
GluI GCNGC 6 cut(s) 38, 41, 254, 270, 441, 444
HaeIII GGCC 2 cut(s) 211, 332
HhaI GCGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 58, 93, 265, 328
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 198, 343, 415, 419
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 178, 269, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 275, 449
HpyF3I CTNAG 1 cut(s) 489
Hsp92II CATG 4 cut(s) 58, 93, 265, 328
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 4 cut(s) 44, 309, 405, 495
LpnPI CCDG 6 cut(s) 225, 292, 303, 314, 319, 394
Lsp1109I GCAGC 4 cut(s) 240, 281, 427, 430
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 46, 311, 407, 497
MboI GATC 4 cut(s) 44, 309, 405, 495
MboII GAAGA 2 cut(s) 29, 388
MluCI AATT 3 cut(s) 142, 173, 430
MnlI CCTC 7 cut(s) 158, 205, 235, 361, 366, 474, 484
MseI TTAA 2 cut(s) 65, 128
MslI CAYNNNNRTG 3 cut(s) 94, 205, 317
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 221, 275, 449
NdeI CATATG 1 cut(s) 202
NdeII GATC 4 cut(s) 44, 309, 405, 495
NlaIII CATG 4 cut(s) 58, 93, 265, 328
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 317
PkrI GCNGC 6 cut(s) 39, 42, 255, 271, 442, 445
Psp6I CCWGG 1 cut(s) 305
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 3 cut(s) 94, 205, 317
SaqAI TTAA 2 cut(s) 65, 128
SatI GCNGC 6 cut(s) 38, 41, 254, 270, 441, 444
Sau3AI GATC 4 cut(s) 44, 309, 405, 495
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 307
SetI ASST 4 cut(s) 190, 274, 308, 495
SmiMI CAYNNNNRTG 3 cut(s) 94, 205, 317
Sse9I AATT 3 cut(s) 142, 173, 430
SsiI CCGC 3 cut(s) 35, 38, 41
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 498
TasI AATT 3 cut(s) 142, 173, 430
TatI WGTACW 1 cut(s) 353
TauI GCSGC 2 cut(s) 40, 43
Tru1I TTAA 2 cut(s) 65, 128
Tru9I TTAA 2 cut(s) 65, 128
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 4 cut(s) 253, 269, 440, 443
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 186
XapI RAATTY 1 cut(s) 142
XmaJI CCTAGG 1 cut(s) 347
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.