MD09G1246800.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010947
Physical Location & Seq
Forward (+)
31616465 .. 31616977
513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1246800.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGCGGACACCACCGCAGAAGTAGAGCAAGAAACGCCGCCACCGCCATCATCATGCTACTCGGTGATTCTGAGAATTATGAGCAAAAGGAGAACATGGGTATGTATATTCGTGCTAGTGTACGCCATCCTCCTGACTTCTTCGTGGAACTTCCTCAAATCCTTGCTCTCCTGGTACAAATTGCAACCCCAGTCGTCTTCGTCGTCGTACGGATGGCCTGCCCTTTACGCCTCGGTGCTTCTGGGGGTGGTATTCGGGCTGCTTTCGATGTTCGCGGCGCTTGCAGTGATGGTTCCGGCCACTCTGGTGACGTGGATCACCATCGTGGTTCTGCTGGCCTTCTTCGGGAAGCCGAGGAGGGCGTTGGTGGTGGAAGGGAGGAAGATTACGAGAGAGATTGTTGGGATTGTGATGAGGATTTTGTTGAAGGAAGGGAACTTGGTGGCTGCTGGTTGCGCTGTTTTGGGGTATTTTGCACTTTTTAGGAGGAATGGGAGTGAGGTGATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.81

Weight (kDa)

9.62

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 275
AciI CCGC 5 cut(s) 5, 15, 38, 44, 275
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 297
AfaI GTAC 3 cut(s) 122, 176, 209
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 1 cut(s) 427
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 1 cut(s) 170
AleI CACNNNNGTG 2 cut(s) 305, 323
AlwI GGATC 1 cut(s) 323
AoxI GGCC 3 cut(s) 215, 297, 336
ApeKI GCWGC 2 cut(s) 259, 446
AspLEI GCGC 2 cut(s) 280, 458
AsuHPI GGTGA 3 cut(s) 76, 310, 319
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 246, 433
BccI CCATC 5 cut(s) 55, 134, 207, 283, 329
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 4 cut(s) 38, 260, 276, 447
BlsI GCNGC 4 cut(s) 39, 261, 277, 448
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 231, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 231, 353
BseGI GGATG 2 cut(s) 126, 218
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 2 cut(s) 246, 433
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 3 cut(s) 217, 299, 338
BsiSI CCGG 1 cut(s) 296
BsiWI CGTACG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 345
BsnI GGCC 3 cut(s) 217, 299, 338
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 5 cut(s) 5, 15, 38, 44, 275
BspANI GGCC 3 cut(s) 217, 299, 338
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 231, 353
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 219, 282, 336
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 126, 218
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 458
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 5 cut(s) 34, 43, 227, 281, 455
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 246, 433
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 3 cut(s) 217, 299, 338
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 126, 218
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 3 cut(s) 219, 282, 336
CfoI GCGC 2 cut(s) 280, 458
Csp6I GTAC 3 cut(s) 121, 175, 208
CviAII CATG 2 cut(s) 54, 96
CviJI RGCY 6 cut(s) 217, 259, 299, 338, 352, 446
CviKI_1 RGCY 6 cut(s) 217, 259, 299, 338, 352, 446
CviQI GTAC 3 cut(s) 121, 175, 208
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 297
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 57, 99
FaiI YATR 5 cut(s) 55, 80, 97, 103, 107
FatI CATG 2 cut(s) 53, 95
Fnu4HI GCNGC 4 cut(s) 38, 260, 276, 447
FokI GGATG 2 cut(s) 113, 225
Fsp4HI GCNGC 4 cut(s) 38, 260, 276, 447
FspBI CTAG 1 cut(s) 116
GlaI GCGC 2 cut(s) 279, 457
GluI GCNGC 4 cut(s) 38, 260, 276, 447
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 3 cut(s) 217, 299, 338
HapII CCGG 1 cut(s) 296
HhaI GCGC 2 cut(s) 280, 458
Hin1II CATG 2 cut(s) 57, 99
Hin6I GCGC 2 cut(s) 278, 456
HinP1I GCGC 2 cut(s) 278, 456
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 296
HphI GGTGA 3 cut(s) 76, 310, 319
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 133, 346
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 205, 208
HpyAV CCTTC 4 cut(s) 349, 368, 421, 425
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 184, 284, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 43, 227, 281, 455
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 2 cut(s) 57, 99
HspAI GCGC 2 cut(s) 278, 456
Kzo9I GATC 1 cut(s) 315
Lsp1109I GCAGC 2 cut(s) 246, 433
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 4 cut(s) 132, 189, 334, 394
MluCI AATT 2 cut(s) 75, 179
MnlI CCTC 9 cut(s) 140, 164, 241, 348, 351, 372, 408, 480, 493
MslI CAYNNNNRTG 4 cut(s) 52, 100, 305, 323
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 5 cut(s) 34, 43, 227, 281, 455
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 57, 99
NlaIV GGNNCC 1 cut(s) 294
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 307
OliI CACNNNNGTG 2 cut(s) 305, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 1 cut(s) 67
Pfl23II CGTACG 1 cut(s) 207
PkrI GCNGC 4 cut(s) 39, 261, 277, 448
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspLI CGTACG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 294
RsaI GTAC 3 cut(s) 122, 176, 209
RsaNI GTAC 3 cut(s) 121, 175, 208
RseI CAYNNNNRTG 4 cut(s) 52, 100, 305, 323
SatI GCNGC 4 cut(s) 38, 260, 276, 447
Sau3AI GATC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 172
SetI ASST 2 cut(s) 314, 504
SmiMI CAYNNNNRTG 4 cut(s) 52, 100, 305, 323
Sse9I AATT 2 cut(s) 75, 179
SsiI CCGC 5 cut(s) 5, 15, 38, 44, 275
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 170
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 266
TasI AATT 2 cut(s) 75, 179
TauI GCSGC 2 cut(s) 40, 278
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 259, 446
Tsp45I GTSAC 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 291
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.