Rorug05G0169300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010947
Physical Location & Seq
Forward (+)
15741484 .. 15742988
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0169300.1

Sequence Viewer

Length: 456 bp
ATGTCCCTCTTGCAATCTCTCTTGGATCCTTTCAGAGTTTTCAACTCAGATTTGGACGATACTCAAATGGACTGGAAGGAGACCTCGAACTCCCACGTTTTCGAAATTGATCTTCCTGGCCTTACAAAAGAGGACGTGAAGCTTGAACTGCATGAAGACAGAGTGCTTCATGTTAGTGCAGAGAGAAAGGATGAAGAGCCTCCCGAAGGGGATCAGAAGATTAAGGAGACGTGGCACTGCAGGGAGAGATCAAGTGGCAGCTTCTCGAAGCATTTCCGGTTGCCTGAGAATGCCAAGGTTGATGAGATTAAGGCTTCAATGCGTGATGGGGTGTTAGTCATTACGGTGCCAAAGGAGGACTTGAAGAAAAAGCCTAAACACAAAGAAGTTGAAATCTCGGGGGATGAAGAGCACGTTTCTAAAGGACTTGGTCGTTTTGTGTGCTGCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.37

Weight (kDa)

5.53

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 24 - 133 1.1e-26 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AclWI GGATC 3 cut(s) 20, 33, 219
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 5 cut(s) 43, 146, 318, 364, 392
AjiI CACGTC 2 cut(s) 136, 231
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 142, 261, 452
AluI AGCT 3 cut(s) 142, 261, 452
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 74, 221
AlwI GGATC 3 cut(s) 20, 33, 219
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 258, 444
Asp700I GAANNNNTTC 1 cut(s) 272
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 397
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 270, 431
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 74, 221
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 259, 445
BlsI GCNGC 2 cut(s) 260, 446
Bme1390I CCNGG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 2 cut(s) 136, 231
BmiI GGNNCC 2 cut(s) 27, 348
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 196, 409
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 60, 276
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 270, 431
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 2 cut(s) 74, 221
BsmBI CGTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 4 cut(s) 25, 109, 211, 248
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 59, 277
BspLI GGNNCC 2 cut(s) 27, 348
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 3 cut(s) 20, 33, 219
BspQI GCTCTTC 2 cut(s) 189, 402
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 25, 109, 211, 248
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 189, 402
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 46, 285
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 196, 409
BstKTI GATC 4 cut(s) 28, 112, 214, 251
BstMAI GTCTC 2 cut(s) 74, 221
BstMBI GATC 4 cut(s) 25, 109, 211, 248
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 270, 431
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 120
BtrI CACGTC 2 cut(s) 136, 231
BtsCI GGATG 2 cut(s) 196, 409
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
CviAII CATG 2 cut(s) 152, 170
CviJI RGCY 7 cut(s) 120, 142, 199, 261, 314, 373, 452
CviKI_1 RGCY 7 cut(s) 120, 142, 199, 261, 314, 373, 452
DdeI CTNAG 2 cut(s) 46, 285
DpnI GATC 4 cut(s) 27, 111, 213, 250
DpnII GATC 4 cut(s) 25, 109, 211, 248
Eam1104I CTCTTC 2 cut(s) 189, 402
EarI CTCTTC 2 cut(s) 189, 402
Eco130I CCWWGG 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 2 cut(s) 155, 173
FaiI YATR 2 cut(s) 153, 171
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 2 cut(s) 151, 169
Fnu4HI GCNGC 2 cut(s) 259, 445
FokI GGATG 2 cut(s) 203, 416
Fsp4HI GCNGC 2 cut(s) 259, 445
GluI GCNGC 2 cut(s) 259, 445
HaeIII GGCC 1 cut(s) 120
HapII CCGG 1 cut(s) 277
Hin1II CATG 2 cut(s) 155, 173
HindIII AAGCTT 2 cut(s) 140, 450
HpaII CCGG 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 35, 49, 216
Hpy188III TCNNGA 2 cut(s) 203, 265
HpyAV CCTTC 2 cut(s) 70, 200
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 4 cut(s) 96, 135, 230, 414
HpyCH4V TGCA 5 cut(s) 13, 151, 179, 240, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 46, 285
HpySE526I ACGT 4 cut(s) 96, 135, 230, 414
Hsp92II CATG 2 cut(s) 155, 173
Kzo9I GATC 4 cut(s) 25, 109, 211, 248
LguI GCTCTTC 2 cut(s) 189, 402
LpnPI CCDG 6 cut(s) 58, 102, 129, 226, 290, 297
Lsp1109I GCAGC 2 cut(s) 270, 431
MaeII ACGT 4 cut(s) 96, 135, 230, 414
MalI GATC 4 cut(s) 27, 111, 213, 250
MboI GATC 4 cut(s) 25, 109, 211, 248
MboII GAAGA 6 cut(s) 104, 167, 206, 229, 376, 419
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 1 cut(s) 105
MnlI CCTC 5 cut(s) 17, 94, 124, 210, 349
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 3 cut(s) 222, 309, 454
MslI CAYNNNNRTG 2 cut(s) 174, 344
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 4 cut(s) 25, 109, 211, 248
NlaIII CATG 2 cut(s) 155, 173
NlaIV GGNNCC 2 cut(s) 27, 348
NspV TTCGAA 1 cut(s) 102
PciSI GCTCTTC 2 cut(s) 189, 402
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 272
PflFI GACNNNGTC 1 cut(s) 429
PkrI GCNGC 2 cut(s) 260, 446
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 27, 348
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 174, 344
SapI GCTCTTC 2 cut(s) 189, 402
SaqAI TTAA 3 cut(s) 222, 309, 454
SatI GCNGC 2 cut(s) 259, 445
Sau3AI GATC 4 cut(s) 25, 109, 211, 248
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 414
SetI ASST 9 cut(s) 86, 99, 138, 144, 233, 263, 300, 417, 454
SfcI CTRYAG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 174, 344
Sse9I AATT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 4 cut(s) 99, 138, 233, 417
TaqI TCGA 3 cut(s) 86, 102, 266
TasI AATT 1 cut(s) 105
Tru1I TTAA 3 cut(s) 222, 309, 454
Tru9I TTAA 3 cut(s) 222, 309, 454
TscAI CASTG 1 cut(s) 242
TseI GCWGC 2 cut(s) 258, 444
TspDTI ATGAA 4 cut(s) 158, 168, 207, 420
TspRI CASTG 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.