Rh2AG321300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010947
Physical Location & Seq
Reverse (-)
46116853 .. 46117374
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG321300.1

Sequence Viewer

Length: 522 bp
ATGGCAGACAAGAGTGAGGAAGAGAAAGACACAGCGGCGCCGCCGCCGCCCTCGTATTACTTGGTGTTCCTCAGAATCATGAGCAAAAGGAGAACCTGGGTTTGTATTTTTGTGCTAGTCTATGCGATCCTCTTAACTAGCTCATGGAATTTCCTCAAATCCATACTCTCCTGGTACAAATTACAAGGCCAGCCTTCGCCGTCGTCATATGGGTGGCCCGCCCTCTACGCCTCCGTGCTCCTCGGCGCTGTTTTCGGGGTGCTCTCCATGTTTGCAGCGCTGGCTGTGATGGTGCCCGCCACTTTGGTTACGTGGATTGCGATTGTGGTTCTCTTGGCCTTCTTCGGCAAGCCCAGGACTAGTTTGGTCGTCGAAGGCAGGAAGATTACTAGAGAGATTGTTGGGATTGTGTTCAAGATTTTGTTGAAGGAAGGTAATTTGGTGGCTGCTGTTTGTGCTATTGTGGGCTATTTTGCACTTTTCAGGAGGAATGGGAGTGCTACCCCTGACCTCATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.11

Weight (kDa)

9.58

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 37, 292
AciI CCGC 6 cut(s) 35, 41, 44, 47, 219, 297
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 279
AgsI TTSAA 2 cut(s) 415, 427
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 3 cut(s) 95, 170, 353
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw21I GWGCWC 2 cut(s) 240, 264
AlwI GGATC 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 3 cut(s) 187, 215, 336
ApeKI GCWGC 2 cut(s) 275, 446
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 3 cut(s) 40, 248, 280
AspS9I GGNCC 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 2 cut(s) 37, 292
Bbv12I GWGCWC 2 cut(s) 240, 264
BbvI GCAGC 2 cut(s) 287, 433
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 3 cut(s) 97, 172, 355
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 4 cut(s) 116, 138, 360, 390
BfoI RGCGCY 3 cut(s) 41, 249, 281
BisI GCNGC 6 cut(s) 36, 41, 44, 47, 276, 447
BlsI GCNGC 6 cut(s) 37, 42, 45, 48, 277, 448
Bme1390I CCNGG 3 cut(s) 97, 172, 355
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 39, 294
BmrFI CCNGG 3 cut(s) 97, 172, 355
BsaAI YACGTR 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 96, 241, 353
BseBI CCWGG 3 cut(s) 97, 172, 355
BseDI CCNNGG 3 cut(s) 96, 241, 353
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 287, 433
BshFI GGCC 3 cut(s) 189, 217, 338
BshNI GGYRCC 2 cut(s) 37, 292
BsiHKAI GWGCWC 2 cut(s) 240, 264
BsnI GGCC 3 cut(s) 189, 217, 338
Bsp1286I GDGCHC 3 cut(s) 240, 264, 297
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 6 cut(s) 35, 41, 44, 47, 219, 297
BspANI GGCC 3 cut(s) 189, 217, 338
BspCNI CTCAG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 39, 294
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 2 cut(s) 37, 292
BssECI CCNNGG 3 cut(s) 96, 241, 353
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 3 cut(s) 97, 172, 355
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 5 cut(s) 191, 219, 282, 297, 350
BstDEI CTNAG 1 cut(s) 71
BstH2I RGCGCY 3 cut(s) 41, 249, 281
BstHHI GCGC 3 cut(s) 40, 248, 280
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 4 cut(s) 46, 227, 281, 455
BstNI CCWGG 3 cut(s) 97, 172, 355
BstSCI CCNGG 3 cut(s) 95, 170, 353
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 287, 433
BsuRI GGCC 3 cut(s) 189, 217, 338
Cac8I GCNNGC 5 cut(s) 191, 219, 282, 297, 350
CciI TCATGA 1 cut(s) 78
CfoI GCGC 3 cut(s) 40, 248, 280
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 79, 144, 268
CviJI RGCY 9 cut(s) 141, 189, 193, 217, 284, 338, 352, 446, 468
CviKI_1 RGCY 9 cut(s) 141, 189, 193, 217, 284, 338, 352, 446, 468
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 71
DinI GGCGCC 1 cut(s) 39
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47III AGCGCT 1 cut(s) 279
EcoRII CCWGG 3 cut(s) 95, 170, 353
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaeI CATG 3 cut(s) 82, 147, 271
FaiI YATR 7 cut(s) 80, 123, 145, 164, 208, 210, 269
FatI CATG 3 cut(s) 78, 143, 267
FauI CCCGC 2 cut(s) 226, 304
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 6 cut(s) 36, 41, 44, 47, 276, 447
Fsp4HI GCNGC 6 cut(s) 36, 41, 44, 47, 276, 447
FspBI CTAG 4 cut(s) 116, 138, 360, 390
GlaI GCGC 3 cut(s) 39, 247, 279
GluI GCNGC 6 cut(s) 36, 41, 44, 47, 276, 447
HaeII RGCGCY 3 cut(s) 41, 249, 281
HaeIII GGCC 3 cut(s) 189, 217, 338
HhaI GCGC 3 cut(s) 40, 248, 280
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 82, 147, 271
Hin6I GCGC 3 cut(s) 38, 246, 278
HinP1I GCGC 3 cut(s) 38, 246, 278
HinfI GANTC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 3 cut(s) 79, 415, 484
Hpy99I CGWCG 2 cut(s) 205, 374
HpyAV CCTTC 5 cut(s) 204, 349, 368, 421, 425
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 275, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 227, 281, 455
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 82, 147, 271
HspAI GCGC 3 cut(s) 38, 246, 278
KasI GGCGCC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 2 cut(s) 287, 433
MaeI CTAG 4 cut(s) 116, 138, 360, 390
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 32, 334, 394
MhlI GDGCHC 3 cut(s) 240, 264, 297
MluCI AATT 3 cut(s) 148, 179, 436
Mly113I GGCGCC 1 cut(s) 38
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 97, 172, 355
MvaI CCWGG 3 cut(s) 97, 172, 355
MwoI GCNNNNNNNGC 4 cut(s) 46, 227, 281, 455
NarI GGCGCC 1 cut(s) 38
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 82, 147, 271
NlaIV GGNNCC 2 cut(s) 39, 294
NmeAIII GCCGAG 1 cut(s) 222
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 6 cut(s) 37, 42, 45, 48, 277, 448
PluTI GGCGCC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 95, 170, 353
PspGI CCWGG 3 cut(s) 95, 170, 353
PspN4I GGNNCC 2 cut(s) 39, 294
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 6 cut(s) 36, 41, 44, 47, 276, 447
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 3 cut(s) 97, 172, 355
SduI GDGCHC 3 cut(s) 240, 264, 297
SetI ASST 5 cut(s) 98, 143, 314, 436, 513
SfoI GGCGCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 211
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 3 cut(s) 148, 179, 436
SsiI CCGC 6 cut(s) 35, 41, 44, 47, 219, 297
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 4 cut(s) 116, 138, 360, 390
StyD4I CCNGG 3 cut(s) 95, 170, 353
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 148, 179, 436
TauI GCSGC 4 cut(s) 38, 43, 46, 49
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 2 cut(s) 275, 446
TspGWI ACGGA 1 cut(s) 223
XapI RAATTY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 4 cut(s) 116, 138, 360, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.