Rroxscaffold_2G00117040

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010947
Physical Location & Seq
Forward (+)
44481652 .. 44482170
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117040.1

Sequence Viewer

Length: 519 bp
ATGGCAGACAAGAGTGAGGAAGAGCAAGACACAGCGGCGCCGCAGCCCTCGTATTACTTGGTGTTCCTCAGAATCATGAGCAAAAGGAGAACCTGGGTATGTATTTTTGTGCTAGTCTATGCGATCCTCTTAACTAGTTCATGGAATTTCCTCAAATCCATACTCTCCTGGTACAAATTACAAGGCCAGCCTTCGCCGTCCTCGTATGGGTGGCCCGCCCTCTACGCCTCCGTGCTCCTCGGCGCTGTTTTCGGGCTGCTCTCCATGTTTGCAGCGCTGGCTGTGATGGTGCCCGCCACTTTGGTGACGTGGATTGCGATTGTGGTTCTCTTGGCCTTCTTTGGGAAGCCCAGGACGAGTTTGGTCGTCGAAGGCAGGAAGATTACTAGAGACATTGTTGGGATTGTGTTCAAGATTTTGTTGAAGGAAGGTAATTTGGTGGCTGCTGTTTGTGCTGTTGTGGGCTATTTTGCACTTTTCAGGAGGAATGGGAATGCTACCCCTGACCTCATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.06

Weight (kDa)

9.48

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 37, 289
AciI CCGC 4 cut(s) 35, 41, 216, 294
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 207, 342
AgsI TTSAA 2 cut(s) 412, 424
AhlI ACTAGT 1 cut(s) 134
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 3 cut(s) 92, 167, 350
AleI CACNNNNGTG 1 cut(s) 302
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 3 cut(s) 184, 212, 333
ApeKI GCWGC 4 cut(s) 43, 256, 272, 443
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 3 cut(s) 40, 245, 277
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 2 cut(s) 37, 289
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 55, 243, 284, 430
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 3 cut(s) 94, 169, 352
BcoDI GTCTC 1 cut(s) 384
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 3 cut(s) 113, 135, 387
BfoI RGCGCY 3 cut(s) 41, 246, 278
BisI GCNGC 6 cut(s) 36, 41, 44, 257, 273, 444
BlsI GCNGC 6 cut(s) 37, 42, 45, 258, 274, 445
Bme1390I CCNGG 3 cut(s) 94, 169, 352
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 39, 291
BmrFI CCNGG 3 cut(s) 94, 169, 352
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 93, 238, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 342
BseBI CCWGG 3 cut(s) 94, 169, 352
BseDI CCNNGG 3 cut(s) 93, 238, 350
BseLI CCNNNNNNNGG 2 cut(s) 207, 342
BseMII CTCAG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 4 cut(s) 55, 243, 284, 430
BshFI GGCC 3 cut(s) 186, 214, 335
BshNI GGYRCC 2 cut(s) 37, 289
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 207, 342
BsmAI GTCTC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 186, 214, 335
Bsp1286I GDGCHC 2 cut(s) 237, 294
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 4 cut(s) 35, 41, 216, 294
BspANI GGCC 3 cut(s) 186, 214, 335
BspCNI CTCAG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 39, 291
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 2 cut(s) 37, 289
BssECI CCNNGG 3 cut(s) 93, 238, 350
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 3 cut(s) 94, 169, 352
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 4 cut(s) 188, 216, 279, 294
BstDEI CTNAG 1 cut(s) 68
BstH2I RGCGCY 3 cut(s) 41, 246, 278
BstHHI GCGC 3 cut(s) 40, 245, 277
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 224, 278, 452
BstNI CCWGG 3 cut(s) 94, 169, 352
BstSCI CCNGG 3 cut(s) 92, 167, 350
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 4 cut(s) 55, 243, 284, 430
BsuRI GGCC 3 cut(s) 186, 214, 335
BtrI CACGTC 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 188, 216, 279, 294
CciI TCATGA 1 cut(s) 75
CfoI GCGC 3 cut(s) 40, 245, 277
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 76, 141, 265
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 68
DinI GGCGCC 1 cut(s) 39
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47III AGCGCT 1 cut(s) 276
EcoRII CCWGG 3 cut(s) 92, 167, 350
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaeI CATG 3 cut(s) 79, 144, 268
FaiI YATR 7 cut(s) 77, 100, 120, 142, 161, 207, 266
FatI CATG 3 cut(s) 75, 140, 264
FauI CCCGC 2 cut(s) 223, 301
Fnu4HI GCNGC 6 cut(s) 36, 41, 44, 257, 273, 444
Fsp4HI GCNGC 6 cut(s) 36, 41, 44, 257, 273, 444
FspBI CTAG 3 cut(s) 113, 135, 387
GlaI GCGC 3 cut(s) 39, 244, 276
GluI GCNGC 6 cut(s) 36, 41, 44, 257, 273, 444
HaeII RGCGCY 3 cut(s) 41, 246, 278
HaeIII GGCC 3 cut(s) 186, 214, 335
HhaI GCGC 3 cut(s) 40, 245, 277
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 79, 144, 268
Hin6I GCGC 3 cut(s) 38, 243, 275
HinP1I GCGC 3 cut(s) 38, 243, 275
HinfI GANTC 1 cut(s) 72
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 3 cut(s) 76, 412, 481
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 5 cut(s) 201, 346, 365, 418, 422
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 272, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 278, 452
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 79, 144, 268
HspAI GCGC 3 cut(s) 38, 243, 275
KasI GGCGCC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 4 cut(s) 55, 243, 284, 430
MaeI CTAG 3 cut(s) 113, 135, 387
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 32, 391
MhlI GDGCHC 2 cut(s) 237, 294
MluCI AATT 3 cut(s) 145, 176, 433
Mly113I GGCGCC 1 cut(s) 38
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 94, 169, 352
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 3 cut(s) 94, 169, 352
MwoI GCNNNNNNNGC 3 cut(s) 224, 278, 452
NarI GGCGCC 1 cut(s) 38
NdeII GATC 1 cut(s) 123
NlaIII CATG 3 cut(s) 79, 144, 268
NlaIV GGNNCC 2 cut(s) 39, 291
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 314
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 6 cut(s) 37, 42, 45, 258, 274, 445
PluTI GGCGCC 1 cut(s) 41
Psp6I CCWGG 3 cut(s) 92, 167, 350
PspGI CCWGG 3 cut(s) 92, 167, 350
PspN4I GGNNCC 2 cut(s) 39, 291
PspPI GGNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 6 cut(s) 36, 41, 44, 257, 273, 444
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 3 cut(s) 94, 169, 352
SduI GDGCHC 2 cut(s) 237, 294
SetI ASST 4 cut(s) 95, 311, 433, 510
SfoI GGCGCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 3 cut(s) 145, 176, 433
SsiI CCGC 4 cut(s) 35, 41, 216, 294
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 3 cut(s) 113, 135, 387
StyD4I CCNGG 3 cut(s) 92, 167, 350
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 369
TasI AATT 3 cut(s) 145, 176, 433
TauI GCSGC 2 cut(s) 38, 43
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 4 cut(s) 43, 256, 272, 443
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 220
XapI RAATTY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 3 cut(s) 113, 135, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.