FvH4_6g26280

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010947
Physical Location & Seq
Reverse (-)
20099566 .. 20101064
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26280.t2

Sequence Viewer

Length: 516 bp
ATGGCAGACAACAACGAGGAAGAACAAGACGCAGCACCGCCGCCCTCGTATTACTTGGTGTTCCTCAGAATCATGAGCAAAAGGAGAACCTGGGTATGTATTTTTGTGCTGGTCTATGCGATCCTCTTAACTAGCTCTTGGAATTTCCTCAAATCCATACTCTCGTGGTACAAATTACAAGGCCTGCCTTCGCCGTCGTCATCTGGGTGGCCGGCCCTCTACGCCTCCGTGCTGCTCGGCGCGGTTTTCGGGCTGCTCTCCATGTTTGCAGCGCTGGCGGTGTTGGTGCCCGCCACCTTGGTGACTTGGATTGCGATTGTGGTTCTCTTGGCCTTTTTTGGGAAGCCCAGGAGGGCTTTGGTCGTCGAAGGCAGGAAGATTACTAGGGAGATTGTGGTGATTGTGTTCAAGATTTTGTTGAAGGAGGGCAATTTGGTGGCTGCTGTTTGTGCTGTTTTGGGCTATTTTGCCCTTTTCAGGAGGAATAGTAATGCTACTCCAGACCTCATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

9.55

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 242
AciI CCGC 5 cut(s) 38, 41, 242, 278, 291
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 339, 477
AgsI TTSAA 2 cut(s) 409, 421
AjnI CCWGG 2 cut(s) 89, 347
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
AlwI GGATC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 4 cut(s) 181, 209, 213, 330
ApeKI GCWGC 5 cut(s) 32, 232, 253, 269, 440
ApoI RAATTY 1 cut(s) 142
AspLEI GCGC 2 cut(s) 242, 274
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 313, 409
BaeGI GKGCMC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 286
BauI CACGAG 1 cut(s) 163
BbvI GCAGC 5 cut(s) 44, 219, 240, 281, 427
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 91, 349
BfaI CTAG 2 cut(s) 132, 384
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 6 cut(s) 33, 41, 233, 254, 270, 441
BlsI GCNGC 6 cut(s) 34, 42, 234, 255, 271, 442
Bme1390I CCNGG 2 cut(s) 91, 349
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 91, 349
BpmI CTGGAG 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 90, 297, 347
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 477
Bse118I RCCGGY 1 cut(s) 211
BseBI CCWGG 2 cut(s) 91, 349
BseDI CCNNGG 3 cut(s) 90, 297, 347
BseLI CCNNNNNNNGG 2 cut(s) 339, 477
BseMII CTCAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 5 cut(s) 44, 219, 240, 281, 427
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 4 cut(s) 183, 211, 215, 332
BshNI GGYRCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 339, 477
BsnI GGCC 4 cut(s) 183, 211, 215, 332
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 5 cut(s) 38, 41, 242, 278, 291
BspANI GGCC 4 cut(s) 183, 211, 215, 332
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 90, 297, 347
BssMI GATC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 91, 349
BstC8I GCNNGC 4 cut(s) 185, 213, 276, 291
BstDEI CTNAG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 242, 274
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 221, 275, 449
BstNI CCWGG 2 cut(s) 91, 349
BstSCI CCNGG 2 cut(s) 89, 347
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 5 cut(s) 44, 219, 240, 281, 427
BsuRI GGCC 4 cut(s) 183, 211, 215, 332
Cac8I GCNNGC 4 cut(s) 185, 213, 276, 291
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 242, 274
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 73, 262
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 89, 347
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 76, 265
FaiI YATR 5 cut(s) 74, 97, 117, 158, 263
FatI CATG 2 cut(s) 72, 261
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 33, 41, 233, 254, 270, 441
FseI GGCCGGCC 1 cut(s) 215
Fsp4HI GCNGC 6 cut(s) 33, 41, 233, 254, 270, 441
FspBI CTAG 2 cut(s) 132, 384
GlaI GCGC 2 cut(s) 241, 273
GluI GCNGC 6 cut(s) 33, 41, 233, 254, 270, 441
GsuI CTGGAG 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 4 cut(s) 183, 211, 215, 332
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 242, 274
Hin1II CATG 2 cut(s) 76, 265
Hin6I GCGC 2 cut(s) 240, 272
HinP1I GCGC 2 cut(s) 240, 272
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 313, 409
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 4 cut(s) 73, 409, 478, 500
Hpy99I CGWCG 2 cut(s) 199, 368
HpyAV CCTTC 3 cut(s) 198, 362, 415
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 275, 449
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 2 cut(s) 76, 265
HspAI GCGC 2 cut(s) 240, 272
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 120
Lsp1109I GCAGC 5 cut(s) 44, 219, 240, 281, 427
MaeI CTAG 2 cut(s) 132, 384
MaeIII GTNAC 1 cut(s) 301
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 32, 388
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 142, 173, 430
MroNI GCCGGC 1 cut(s) 211
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 205, 299
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 91, 349
MvaI CCWGG 2 cut(s) 91, 349
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 221, 275, 449
NaeI GCCGGC 1 cut(s) 213
NdeII GATC 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 211
NlaIII CATG 2 cut(s) 76, 265
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 299
PagI TCATGA 1 cut(s) 72
PceI AGGCCT 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 6 cut(s) 34, 42, 234, 255, 271, 442
Psp6I CCWGG 2 cut(s) 89, 347
PspGI CCWGG 2 cut(s) 89, 347
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 214
RigI GGCCGGCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 205, 299
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 6 cut(s) 33, 41, 233, 254, 270, 441
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 91, 349
SduI GDGCHC 1 cut(s) 291
SetI ASST 4 cut(s) 92, 137, 299, 507
SmiMI CAYNNNNRTG 2 cut(s) 205, 299
Sse9I AATT 3 cut(s) 142, 173, 430
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 5 cut(s) 38, 41, 242, 278, 291
SspMI CTAG 2 cut(s) 132, 384
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 89, 347
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 1 cut(s) 366
TasI AATT 3 cut(s) 142, 173, 430
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 5 cut(s) 32, 232, 253, 269, 440
Tsp45I GTSAC 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 217
XapI RAATTY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 2 cut(s) 132, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.