AT1G03930
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1004688 .. 1008370
3683 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03930.1

Sequence Viewer

Length: 1416 bp
ATGGATCTTGTGATTGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGTAGTGGTTCCTTTGGAGAGCTTTATCTAGGTATAAATGTTCAAACCGGAGAAGAAGTTGCTGTCAAGCTGGAATCTGTGAAAACTAAGCATCCCCAACTCCACTATGAGTCGAAGTTGTATATGCTGCTTCAAGGAGGAACTGGTGTTCCTAACCTCAAGTGGTATGGAGTTGAAGGGGATTACAATGTAATGGTTATTGACCTTCTAGGTCCTAGTCTTGAAGACTTGTTTAACTACTGTAATAGAAAACTCTCTTTAAAAACCGTTCTCATGCTTGCGGACCAGCTGATTAACAGAGTCGAGTTTATGCATACTAGAGGTTTTCTTCACCGTGATATTAAACCTGACAACTTCTTAATGGGCCTTGGTCGCAAAGCAAATCAGGTTTATATCATTGATTTTGGATTGGGGAAGAAATACAGAGACCTTCAGACTCACAGGCACATACCGTACAGAGAAAACAAAAACCTCACTGGAACAGCTCGGTATGCAAGTGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTATGTGCTGATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAAGAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAGCAACTCCTATAGAGGTCTTGTGTAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCTCTACGGTTTGATGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAGGTTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAGATTGGTTCCAGCTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAACCCGGGCTTAACTGCAGGAGCTTCTCTCGAAAAACAGGAGAGGATTGCTGGAAAGGAGACTCGCGAGAACCGGTTCTCGGGTGCAGTAGAGGCTTTCTCAAGAAGGCATCCGGCAACTTCTACTACTCGTGATCGCTCGGCATCAAGAAACTCCGTTGATGGGCCTTTGTCTAAGCATCCGCCTGGTGACTCAGAAAGACCACGCAGTTCCTCAAGATATGGAAGCTCTTCGAGGAGAGCAATTCCGTCAAGCTCTCGACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGCCGTCTGGTGACATCAACTGGAGGAGTCGGAACAGTAAGTAACCGCGCATCAACAAGCCAGAGAATCCAAGCAGGAAACGAATCCAGGACGTCGTCTTTTTCGCGTGCTGCTAGAAACACTCGAGAAGATCCATTAAGGAGGAGCTTAGAGCTTCTCACTCTCAGAAAATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.0

Weight (kDa)

9.98

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 3.6e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 269 1.5e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 110 - 206 3.5e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1205
AatII GACGTC 1 cut(s) 1337
Acc36I ACCTGC 1 cut(s) 1205
AccII CGCG 4 cut(s) 822, 1008, 1290, 1348
AciI CCGC 5 cut(s) 326, 820, 1124, 1212, 1288
AclWI GGATC 3 cut(s) 12, 1230, 1367
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 461, 899
AcyI GRCGYC 1 cut(s) 1334
AfaI GTAC 2 cut(s) 500, 752
AfiI CCNNNNNNNGG 4 cut(s) 641, 893, 1021, 1104
AflII CTTAAG 1 cut(s) 806
AgeI ACCGGT 1 cut(s) 1014
AgsI TTSAA 4 cut(s) 89, 179, 221, 269
AjnI CCWGG 3 cut(s) 635, 1126, 1328
AloI GAACNNNNNNTCC 4 cut(s) 177, 178, 209, 210
Alw26I GTCTC 3 cut(s) 465, 774, 995
AlwI GGATC 3 cut(s) 12, 1230, 1367
Ama87I CYCGRG 3 cut(s) 946, 1021, 1365
AoxI GGCC 2 cut(s) 409, 1106
ApeKI GCWGC 2 cut(s) 172, 1352
ApoI RAATTY 1 cut(s) 23
AsiGI ACCGGT 1 cut(s) 1014
Asp700I GAANNNNTTC 2 cut(s) 1016, 1171
AspLEI GCGC 1 cut(s) 1292
AspS9I GGNCC 5 cut(s) 257, 328, 409, 1106, 1220
AsuC2I CCSGG 2 cut(s) 947, 948
AsuHPI GGTGA 4 cut(s) 368, 545, 1142, 1264
AvaI CYCGRG 3 cut(s) 946, 1021, 1365
AvaII GGWCC 3 cut(s) 257, 328, 1220
BauI CACGAG 1 cut(s) 1071
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 159, 1339
BccI CCATC 1 cut(s) 1097
BceAI ACGGC 1 cut(s) 1230
BciT130I CCWGG 3 cut(s) 637, 1128, 1330
BciVI GTATCC 1 cut(s) 894
BcnI CCSGG 2 cut(s) 947, 948
BcoDI GTCTC 3 cut(s) 465, 774, 995
BfaI CTAG 7 cut(s) 74, 254, 261, 363, 912, 1242, 1356
BfmI CTRYAG 2 cut(s) 708, 957
BfrI CTTAAG 1 cut(s) 806
BfuAI ACCTGC 1 cut(s) 1205
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 2 cut(s) 173, 1353
BlsI GCNGC 2 cut(s) 174, 1354
Bme1390I CCNGG 5 cut(s) 637, 947, 948, 1128, 1330
Bme18I GGWCC 3 cut(s) 257, 328, 1220
BmeT110I CYCGRG 3 cut(s) 946, 1021, 1365
BmgT120I GGNCC 5 cut(s) 257, 328, 409, 1106, 1220
BmiI GGNNCC 2 cut(s) 55, 898
BmrFI CCNGG 5 cut(s) 637, 947, 948, 1128, 1330
BmsI GCATC 5 cut(s) 145, 1060, 1094, 1129, 1301
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 4 cut(s) 954, 986, 1025, 1057
BpmI CTGGAG 1 cut(s) 1284
BpuEI CTTGAG 3 cut(s) 188, 1027, 1141
BpuMI CCSGG 2 cut(s) 947, 948
BsaHI GRCGYC 1 cut(s) 1334
BsaI GGTCTC 2 cut(s) 465, 774
BsaJI CCNNGG 4 cut(s) 412, 556, 635, 946
BsaWI WCCGGW 2 cut(s) 92, 1014
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 641, 893, 1021, 1104
Bse118I RCCGGY 2 cut(s) 765, 1014
Bse1I ACTGG 4 cut(s) 193, 526, 872, 1267
BseBI CCWGG 3 cut(s) 637, 1128, 1330
BseDI CCNNGG 4 cut(s) 412, 556, 635, 946
BseGI GGATG 3 cut(s) 136, 1051, 1120
BseLI CCNNNNNNNGG 4 cut(s) 641, 893, 1021, 1104
BseMII CTCAG 3 cut(s) 729, 902, 1149
BseNI ACTGG 4 cut(s) 193, 526, 872, 1267
BseRI GAGGAG 3 cut(s) 1192, 1281, 1399
BseXI GCAGC 2 cut(s) 159, 1339
BseYI CCCAGC 1 cut(s) 653
BsgI GTGCAG 1 cut(s) 1047
Bsh1236I CGCG 4 cut(s) 822, 1008, 1290, 1348
BshFI GGCC 2 cut(s) 411, 1108
BshTI ACCGGT 1 cut(s) 1014
BsiHKCI CYCGRG 3 cut(s) 946, 1021, 1365
BsiSI CCGG 5 cut(s) 93, 766, 947, 1015, 1055
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 4 cut(s) 641, 893, 1021, 1104
BsmAI GTCTC 3 cut(s) 465, 774, 995
BsmFI GGGAC 1 cut(s) 670
BsnI GGCC 2 cut(s) 411, 1108
Bso31I GGTCTC 2 cut(s) 465, 774
BsoBI CYCGRG 3 cut(s) 946, 1021, 1365
Bsp143I GATC 4 cut(s) 4, 1075, 1235, 1372
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 5 cut(s) 326, 820, 1124, 1212, 1288
BspANI GGCC 2 cut(s) 411, 1108
BspCNI CTCAG 3 cut(s) 730, 901, 1148
BspFNI CGCG 4 cut(s) 822, 1008, 1290, 1348
BspLI GGNNCC 2 cut(s) 55, 898
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 1205
BspPI GGATC 3 cut(s) 12, 1230, 1367
BspQI GCTCTTC 1 cut(s) 1177
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 2 cut(s) 465, 774
BsrFI RCCGGY 2 cut(s) 765, 1014
BsrI ACTGG 4 cut(s) 193, 526, 872, 1267
BssAI RCCGGY 2 cut(s) 765, 1014
BssECI CCNNGG 4 cut(s) 412, 556, 635, 946
BssMI GATC 4 cut(s) 4, 1075, 1235, 1372
BssNI GRCGYC 1 cut(s) 1334
BssSI CACGAG 1 cut(s) 1071
BssT1I CCWWGG 2 cut(s) 412, 556
Bst2BI CACGAG 1 cut(s) 1071
Bst2UI CCWGG 3 cut(s) 637, 1128, 1330
Bst4CI ACNGT 8 cut(s) 287, 313, 380, 498, 735, 777, 874, 1279
Bst6I CTCTTC 2 cut(s) 571, 1177
BstACI GRCGYC 1 cut(s) 1334
BstAFI CTTAAG 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 324, 1350
BstDEI CTNAG 7 cut(s) 132, 738, 888, 1116, 1135, 1390, 1406
BstF5I GGATG 3 cut(s) 136, 1051, 1120
BstFNI CGCG 4 cut(s) 822, 1008, 1290, 1348
BstHHI GCGC 1 cut(s) 1292
BstKTI GATC 4 cut(s) 7, 1078, 1238, 1375
BstMAI GTCTC 3 cut(s) 465, 774, 995
BstMBI GATC 4 cut(s) 4, 1075, 1235, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 417, 536, 1034
BstNI CCWGG 3 cut(s) 637, 1128, 1330
BstSCI CCNGG 5 cut(s) 635, 945, 946, 1126, 1328
BstSFI CTRYAG 2 cut(s) 708, 957
BstUI CGCG 4 cut(s) 822, 1008, 1290, 1348
BstV1I GCAGC 2 cut(s) 159, 1339
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 4, 1372
BstYI RGATCY 2 cut(s) 4, 1372
BsuI GTATCC 1 cut(s) 894
BsuRI GGCC 2 cut(s) 411, 1108
BtsCI GGATG 3 cut(s) 136, 1051, 1120
BtsIMutI CAGTG 1 cut(s) 519
BtuMI TCGCGA 1 cut(s) 1008
BveI ACCTGC 1 cut(s) 1205
Cac8I GCNNGC 2 cut(s) 324, 1350
CfoI GCGC 1 cut(s) 1292
Cfr10I RCCGGY 2 cut(s) 765, 1014
Cfr13I GGNCC 5 cut(s) 257, 328, 409, 1106, 1220
Cfr9I CCCGGG 1 cut(s) 946
Csp6I GTAC 2 cut(s) 499, 751
CspAI ACCGGT 1 cut(s) 1014
CviAII CATG 1 cut(s) 319
CviQI GTAC 2 cut(s) 499, 751
DdeI CTNAG 7 cut(s) 132, 738, 888, 1116, 1135, 1390, 1406
DpnI GATC 4 cut(s) 6, 1077, 1237, 1374
DpnII GATC 4 cut(s) 4, 1075, 1235, 1372
DraI TTTAAA 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 571, 1177
EarI CTCTTC 2 cut(s) 571, 1177
EciI GGCGGA 1 cut(s) 1113
Eco130I CCWWGG 2 cut(s) 412, 556
Eco31I GGTCTC 2 cut(s) 465, 774
Eco47I GGWCC 3 cut(s) 257, 328, 1220
Eco57I CTGAAG 2 cut(s) 461, 899
Eco88I CYCGRG 3 cut(s) 946, 1021, 1365
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 635, 1126, 1328
EcoT14I CCWWGG 2 cut(s) 412, 556
EcoT22I ATGCAT 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 412, 556
FaeI CATG 1 cut(s) 322
FaqI GGGAC 1 cut(s) 670
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 173, 1353
FokI GGATG 3 cut(s) 123, 1038, 1107
Fsp4HI GCNGC 2 cut(s) 173, 1353
FspBI CTAG 7 cut(s) 74, 254, 261, 363, 912, 1242, 1356
GlaI GCGC 1 cut(s) 1291
GluI GCNGC 2 cut(s) 173, 1353
GsaI CCCAGC 1 cut(s) 657
GsuI CTGGAG 1 cut(s) 1284
HaeIII GGCC 2 cut(s) 411, 1108
HapII CCGG 5 cut(s) 93, 766, 947, 1015, 1055
HhaI GCGC 1 cut(s) 1292
Hin1I GRCGYC 1 cut(s) 1334
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 1290
HinP1I GCGC 1 cut(s) 1290
HindIII AAGCTT 1 cut(s) 29
HpaII CCGG 5 cut(s) 93, 766, 947, 1015, 1055
HphI GGTGA 4 cut(s) 368, 545, 1142, 1264
Hpy166II GTNNAC 3 cut(s) 547, 917, 1220
Hpy188I TCNGA 7 cut(s) 480, 739, 879, 891, 1138, 1274, 1409
Hpy8I GTNNAC 3 cut(s) 547, 917, 1220
Hpy99I CGWCG 1 cut(s) 1339
HpyAV CCTTC 5 cut(s) 215, 260, 485, 833, 1041
HpyCH4III ACNGT 8 cut(s) 287, 313, 380, 498, 735, 777, 874, 1279
HpyCH4IV ACGT 1 cut(s) 1334
HpyCH4V TGCA 5 cut(s) 358, 539, 941, 959, 1028
HpyF10VI GCNNNNNNNGC 3 cut(s) 417, 536, 1034
HpyF3I CTNAG 7 cut(s) 132, 738, 888, 1116, 1135, 1390, 1406
HpySE526I ACGT 1 cut(s) 1334
Hsp92I GRCGYC 1 cut(s) 1334
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 1290
Kzo9I GATC 4 cut(s) 4, 1075, 1235, 1372
LguI GCTCTTC 1 cut(s) 1177
LmnI GCTCC 3 cut(s) 627, 962, 1386
Lsp1109I GCAGC 2 cut(s) 159, 1339
LweI GCATC 5 cut(s) 145, 1060, 1094, 1129, 1301
MaeI CTAG 7 cut(s) 74, 254, 261, 363, 912, 1242, 1356
MaeII ACGT 1 cut(s) 1334
MaeIII GTNAC 4 cut(s) 758, 1130, 1252, 1283
MalI GATC 4 cut(s) 6, 1077, 1237, 1374
MboI GATC 4 cut(s) 4, 1075, 1235, 1372
MboII GAAGA 7 cut(s) 110, 281, 365, 472, 588, 1164, 1382
MflI RGATCY 2 cut(s) 4, 1372
MluCI AATT 4 cut(s) 23, 42, 681, 1185
MlyI GAGTC 7 cut(s) 164, 354, 475, 570, 997, 1127, 1278
MmeI TCCRAC 1 cut(s) 1252
Mph1103I ATGCAT 1 cut(s) 360
MroXI GAANNNNTTC 2 cut(s) 1016, 1171
MspA1I CMGCKG 1 cut(s) 334
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 5 cut(s) 93, 766, 947, 1015, 1055
MspR9I CCNGG 5 cut(s) 637, 947, 948, 1128, 1330
MvaI CCWGG 3 cut(s) 637, 1128, 1330
MvnI CGCG 4 cut(s) 822, 1008, 1290, 1348
MwoI GCNNNNNNNGC 3 cut(s) 417, 536, 1034
NciI CCSGG 2 cut(s) 947, 948
NdeII GATC 4 cut(s) 4, 1075, 1235, 1372
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 2 cut(s) 55, 898
NmeAIII GCCGAG 1 cut(s) 1061
NmuCI GTSAC 2 cut(s) 1130, 1252
NruI TCGCGA 1 cut(s) 1008
NsiI ATGCAT 1 cut(s) 360
PaeR7I CTCGAG 1 cut(s) 1365
PaqCI CACCTGC 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 1177
PdmI GAANNNNTTC 2 cut(s) 1016, 1171
PfeI GAWTC 4 cut(s) 119, 928, 1308, 1325
PflFI GACNNNGTC 1 cut(s) 1336
PfoI TCCNGGA 1 cut(s) 1328
PinAI ACCGGT 1 cut(s) 1014
PkrI GCNGC 2 cut(s) 174, 1354
PleI GAGTC 7 cut(s) 163, 353, 475, 569, 997, 1127, 1277
PpsI GAGTC 7 cut(s) 163, 353, 475, 569, 997, 1127, 1277
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 635, 1126, 1328
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 3 cut(s) 635, 1126, 1328
PspN4I GGNNCC 2 cut(s) 55, 898
PspPI GGNCC 5 cut(s) 257, 328, 409, 1106, 1220
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 961
PsuI RGATCY 2 cut(s) 4, 1372
PsyI GACNNNGTC 1 cut(s) 1336
PvuII CAGCTG 1 cut(s) 334
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 2 cut(s) 500, 752
RsaNI GTAC 2 cut(s) 499, 751
SapI GCTCTTC 1 cut(s) 1177
SatI GCNGC 2 cut(s) 173, 1353
Sau3AI GATC 4 cut(s) 4, 1075, 1235, 1372
Sau96I GGNCC 5 cut(s) 257, 328, 409, 1106, 1220
SchI GAGTC 7 cut(s) 164, 354, 475, 570, 997, 1127, 1278
ScrFI CCNGG 5 cut(s) 637, 947, 948, 1128, 1330
SfaNI GCATC 5 cut(s) 145, 1060, 1094, 1129, 1301
SfcI CTRYAG 2 cut(s) 708, 957
Sfr274I CTCGAG 1 cut(s) 1365
SinI GGWCC 3 cut(s) 257, 328, 1220
SlaI CTCGAG 1 cut(s) 1365
SmaI CCCGGG 1 cut(s) 948
SmlI CTYRAG 5 cut(s) 203, 806, 1042, 1156, 1365
SmoI CTYRAG 5 cut(s) 203, 806, 1042, 1156, 1365
Sse9I AATT 4 cut(s) 23, 42, 681, 1185
SsiI CCGC 5 cut(s) 326, 820, 1124, 1212, 1288
SspMI CTAG 7 cut(s) 74, 254, 261, 363, 912, 1242, 1356
StyD4I CCNGG 5 cut(s) 635, 945, 946, 1126, 1328
StyI CCWWGG 2 cut(s) 412, 556
TaaI ACNGT 8 cut(s) 287, 313, 380, 498, 735, 777, 874, 1279
TaiI ACGT 1 cut(s) 1337
TasI AATT 4 cut(s) 23, 42, 681, 1185
TfiI GAWTC 4 cut(s) 119, 928, 1308, 1325
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 2 cut(s) 1130, 1252
TseI GCWGC 2 cut(s) 172, 1352
Tsp45I GTSAC 2 cut(s) 1130, 1252
TspGWI ACGGA 4 cut(s) 934, 940, 1087, 1179
TspMI CCCGGG 1 cut(s) 946
TspRI CASTG 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 1336
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 3 cut(s) 257, 328, 1220
XapI RAATTY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 1365
XmaI CCCGGG 1 cut(s) 946
XmnI GAANNNNTTC 2 cut(s) 1016, 1171
XspI CTAG 7 cut(s) 74, 254, 261, 363, 912, 1242, 1356
ZraI GACGTC 1 cut(s) 1335
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.