Rh6CG314800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006989
Physical Location & Seq
Reverse (-)
49949310 .. 49955140
5831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG314800.1

Sequence Viewer

Length: 996 bp
ATGGAGCATGTGATTGCTGGAAAGTTTAAGCTGGGGAGGAAGATTGGGAGTGGCTCTTTCGGAGAGCTCTATCTAGGTGTCAATGTACAAACCGGAGAGGAGGTTGCTGTGAAACTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCCAAATTGTACATGCTTCTTCAGGGAGGAACGGGAATCCCCCACCTGAAGTGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGATCTTCTGGGACCAAGTTTGGAAGATTTGTTCAACTATTGTAATAGGAAGTTTACATTGAAAACAGTTTTGATGCTTGCAGATCAATTAATTAACAGAGTCGAGTACATGCACTCAAGAGGTTTCCTTCATCGTGATATAAAACCTGACAACTTCTTAATGGGCCTAGGGCGTAAAGCCAATCAGGTATATGCTATTGATTATGGCCTTGCAAAGAAGTATAGGGATCTCCAGACTCACAAACACATACCATACAGGGAGAACAAGAACCTCACAGGCACTGCCCGCTATGCAAGTGTTAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCACTTGGTTATGTGCTTATGTATTTCCTAAGAGGAAGCCTTCCCTGGCAAGGATTGAAGGCTGGCACAAAAAAGCAAAAATACGACAAAATCAGTGAAAAGAAAATGTCAACTCCTATAGAGGTGCTTTGCAGATCACATCCATCTGAGTTTGTATCCTACTTTCACTACTGCCGATCATTGCGGTTTGAAGACAAGCCGGATTATTCATACCTGAAGAGGCTTTTTCGAGACTTATTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACCGTACTGAAGTACCCCCAGATTGGTGGAAGCTCCAGAGGATGGCATTCCAGTGGAAAAGCAGGTGCAAATGCGGGACCATCTGGGGAAAGACCTGAAAGAGTCTCAGGTACTGTTTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005911 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0051716 GO:0055028 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711
Pfam Domains
Protein Families
Pkinase

Protein Analysis

331

Amino Acids

38.03

Weight (kDa)

9.41

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 1.8e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 270 1.6e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 118 - 206 6.8e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 923
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 912
AciI CCGC 3 cut(s) 532, 775, 944
AclWI GGATC 1 cut(s) 480
AcuI CTGAAG 4 cut(s) 161, 224, 827, 899
AfaI GTAC 6 cut(s) 87, 167, 353, 876, 884, 982
AfiI CCNNNNNNNGG 3 cut(s) 641, 893, 912
AgsI TTSAA 5 cut(s) 280, 307, 566, 649, 782
AjnI CCWGG 1 cut(s) 635
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 31, 67, 145, 903
AluI AGCT 4 cut(s) 31, 67, 145, 903
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 816, 979
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 2 cut(s) 527, 983
AoxI GGCC 2 cut(s) 409, 451
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AseI ATTAAT 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 4 cut(s) 257, 409, 870, 947
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 3 cut(s) 257, 870, 947
AvrII CCTAGG 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 866, 899
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 134, 789
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 3 cut(s) 742, 906, 958
BciT130I CCWGG 1 cut(s) 637
BciVI GTATCC 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 816, 979
BfaI CTAG 2 cut(s) 74, 413
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 923
BfuI GTATCC 1 cut(s) 757
BlnI CCTAGG 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 637
Bme18I GGWCC 3 cut(s) 257, 870, 947
BmgT120I GGNCC 4 cut(s) 257, 409, 870, 947
BmiI GGNNCC 3 cut(s) 120, 258, 948
BmrFI CCNGG 1 cut(s) 637
BmsI GCATC 2 cut(s) 145, 309
BpiI GAAGAC 2 cut(s) 134, 789
BpmI CTGGAG 2 cut(s) 461, 889
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 412, 635
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 641, 893, 912
Bse1I ACTGG 3 cut(s) 120, 872, 921
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 412, 635
BseGI GGATG 4 cut(s) 136, 586, 730, 917
BseLI CCNNNNNNNGG 3 cut(s) 641, 893, 912
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 2 cut(s) 729, 990
BseNI ACTGG 3 cut(s) 120, 872, 921
BseRI GAGGAG 1 cut(s) 113
BseYI CCCAGC 2 cut(s) 31, 141
BshFI GGCC 2 cut(s) 411, 453
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 93, 791
BslFI GGGAC 2 cut(s) 270, 960
BslI CCNNNNNNNGG 3 cut(s) 641, 893, 912
BsmAI GTCTC 2 cut(s) 816, 979
BsmFI GGGAC 2 cut(s) 270, 960
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 2 cut(s) 411, 453
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 2 cut(s) 85, 165
Bsp143I GATC 6 cut(s) 247, 328, 472, 583, 725, 767
BspACI CCGC 3 cut(s) 532, 775, 944
BspANI GGCC 2 cut(s) 411, 453
BspCNI CTCAG 2 cut(s) 730, 989
BspLI GGNNCC 3 cut(s) 120, 258, 948
BspMI ACCTGC 1 cut(s) 923
BspPI GGATC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 770
BsrGI TGTACA 2 cut(s) 85, 165
BsrI ACTGG 3 cut(s) 120, 872, 921
BssECI CCNNGG 2 cut(s) 412, 635
BssMI GATC 6 cut(s) 247, 328, 472, 583, 725, 767
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 3 cut(s) 313, 874, 985
Bst6I CTCTTC 1 cut(s) 803
BstAUI TGTACA 2 cut(s) 85, 165
BstC8I GCNNGC 3 cut(s) 324, 532, 655
BstDEI CTNAG 3 cut(s) 620, 738, 976
BstF5I GGATG 4 cut(s) 136, 586, 730, 917
BstKTI GATC 6 cut(s) 250, 331, 475, 586, 728, 770
BstMAI GTCTC 2 cut(s) 816, 979
BstMBI GATC 6 cut(s) 247, 328, 472, 583, 725, 767
BstMWI GCNNNNNNNGC 3 cut(s) 142, 531, 536
BstNI CCWGG 1 cut(s) 637
BstNSI RCATGY 3 cut(s) 11, 172, 358
BstSCI CCNGG 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 708
BstV2I GAAGAC 2 cut(s) 134, 789
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 2 cut(s) 411, 453
BtsCI GGATG 4 cut(s) 136, 586, 730, 917
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 3 cut(s) 525, 691, 928
BveI ACCTGC 1 cut(s) 923
Cac8I GCNNGC 3 cut(s) 324, 532, 655
CaiI CAGNNNCTG 2 cut(s) 527, 983
Cfr13I GGNCC 4 cut(s) 257, 409, 870, 947
Csp6I GTAC 6 cut(s) 86, 166, 352, 875, 883, 981
CviAII CATG 4 cut(s) 8, 169, 238, 355
CviQI GTAC 6 cut(s) 86, 166, 352, 875, 883, 981
DdeI CTNAG 3 cut(s) 620, 738, 976
DpnI GATC 6 cut(s) 249, 330, 474, 585, 727, 769
DpnII GATC 6 cut(s) 247, 328, 472, 583, 725, 767
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 3 cut(s) 257, 870, 947
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 161, 224, 827, 899
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 4 cut(s) 11, 172, 241, 358
FaqI GGGAC 2 cut(s) 270, 960
FatI CATG 4 cut(s) 7, 168, 237, 354
FauI CCCGC 2 cut(s) 539, 937
FokI GGATG 4 cut(s) 123, 593, 717, 924
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 2 cut(s) 74, 413
GsaI CCCAGC 2 cut(s) 35, 145
GsuI CTGGAG 2 cut(s) 461, 889
HaeIII GGCC 2 cut(s) 411, 453
HapII CCGG 2 cut(s) 93, 791
Hin1II CATG 4 cut(s) 11, 172, 241, 358
HincII GTYRAC 2 cut(s) 547, 702
HindII GTYRAC 2 cut(s) 547, 702
HinfI GANTC 6 cut(s) 155, 192, 345, 481, 590, 972
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 93, 791
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 300, 547, 702
Hpy188I TCNGA 2 cut(s) 62, 739
Hpy188III TCNNGA 8 cut(s) 363, 380, 478, 587, 821, 836, 906, 993
Hpy8I GTNNAC 3 cut(s) 300, 547, 702
HpyAV CCTTC 5 cut(s) 383, 570, 641, 643, 833
HpyCH4III ACNGT 3 cut(s) 313, 874, 985
HpyCH4V TGCA 6 cut(s) 326, 358, 458, 539, 723, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 531, 536
HpyF3I CTNAG 3 cut(s) 620, 738, 976
Hsp92II CATG 4 cut(s) 11, 172, 241, 358
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 6 cut(s) 247, 328, 472, 583, 725, 767
LmnI GCTCC 2 cut(s) 4, 908
LweI GCATC 2 cut(s) 145, 309
MaeI CTAG 2 cut(s) 74, 413
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 249, 330, 474, 585, 727, 769
MboI GATC 6 cut(s) 247, 328, 472, 583, 725, 767
MboII GAAGA 7 cut(s) 52, 139, 167, 242, 281, 794, 820
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 5 cut(s) 161, 332, 336, 561, 848
MlyI GAGTC 4 cut(s) 164, 354, 475, 981
MseI TTAA 5 cut(s) 27, 335, 339, 404, 546
MslI CAYNNNNRTG 1 cut(s) 921
MspI CCGG 2 cut(s) 93, 791
MspR9I CCNGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 3 cut(s) 142, 531, 536
NdeII GATC 6 cut(s) 247, 328, 472, 583, 725, 767
NlaIII CATG 4 cut(s) 11, 172, 241, 358
NlaIV GGNNCC 3 cut(s) 120, 258, 948
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 3 cut(s) 11, 172, 358
PacI TTAATTAA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 923
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 2 cut(s) 192, 590
PflMI CCANNNNNTGG 1 cut(s) 912
PleI GAGTC 4 cut(s) 163, 353, 475, 980
PpsI GAGTC 4 cut(s) 163, 353, 475, 980
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 2 cut(s) 31, 141
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 120, 258, 948
PspPI GGNCC 4 cut(s) 257, 409, 870, 947
PstNI CAGNNNCTG 2 cut(s) 527, 983
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 6 cut(s) 87, 167, 353, 876, 884, 982
RsaNI GTAC 6 cut(s) 86, 166, 352, 875, 883, 981
RseI CAYNNNNRTG 1 cut(s) 921
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 27, 335, 339, 404, 546
Sau3AI GATC 6 cut(s) 247, 328, 472, 583, 725, 767
Sau96I GGNCC 4 cut(s) 257, 409, 870, 947
SchI GAGTC 4 cut(s) 164, 354, 475, 981
ScrFI CCNGG 1 cut(s) 637
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 145, 309
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 3 cut(s) 257, 870, 947
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 5 cut(s) 161, 332, 336, 561, 848
SsiI CCGC 3 cut(s) 532, 775, 944
SspMI CTAG 2 cut(s) 74, 413
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 635
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 313, 874, 985
TaqI TCGA 3 cut(s) 348, 820, 835
TasI AATT 5 cut(s) 161, 332, 336, 561, 848
TatI WGTACW 3 cut(s) 85, 165, 351
TfiI GAWTC 2 cut(s) 192, 590
Tru1I TTAA 5 cut(s) 27, 335, 339, 404, 546
Tru9I TTAA 5 cut(s) 27, 335, 339, 404, 546
TscAI CASTG 3 cut(s) 532, 691, 928
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 365, 789
TspRI CASTG 3 cut(s) 532, 691, 928
Van91I CCANNNNNTGG 1 cut(s) 912
VpaK11BI GGWCC 3 cut(s) 257, 870, 947
VspI ATTAAT 1 cut(s) 335
XceI RCATGY 3 cut(s) 11, 172, 358
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 2 cut(s) 74, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.