Rh6BG306400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006989
Physical Location & Seq
Reverse (-)
53584965 .. 53590652
5688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG306400.1

Sequence Viewer

Length: 966 bp
ATGGAGCATGTGATTGCTGGAAAGTTTAAGCTGGGGAGGAAGATTGGGAGTGGCTCTTTCGGAGAGCTCTATCTAGGTGTCAATGTACAAACCGGAGAGGAGGTTGCTGTGAAACTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCCAAATTGTACATGCTTCTTCAGGGAGGAACGGGAATCCCCCACCTGAAGTGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGATCTTCTGGGACCAAGTTTGGAAGATTTGTTCAACTATTGTAATAGGAAGTTTACATTGAAAACAGTTTTGATGCTTGCAGATCAATTAATTAACAGAGTCGAGTACATGCACTCAAGAGGTTTCCTTCATCGTGATATAAAACCTGACAACTTTTTAATGGGCCTAGGGCGTAAAGCCAATCAGGTATATGCTATTGATTATGGCCTTGCAAAGAAGTATAGGGATCTCCAGACTCACAAACACATACCATACAGGGAGAACAAGAACCTCACAGGCACTGCCCGCTATGCAAGTGTTAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCACTTGGTTATGTGCTTATGTATTTCCTAAGAGGAAGCCTTCCCTGGCAAGGATTGAAGGCTGGCACAAAAAAGCAAAAATACGACAAAATCAGTGAAAAGAAAATGTCAACTCCTATAGAGGTGCTTTGCAGATCACATCCATCTGAGTTTGTATCCTACTTTCACTACTGCCGATCATTGCGGTTTGAAGACAAGCCGGATTATTCATACCTGAAGAGGCTTTTTCGAGACTTATTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACCGTACTGAAGTACCCCCAGATTGGTGGAAGCTCTAGAGGATGGGTAAGTCTTTGGAAAATCTTAGGTTCAAATTCTTATTTTGCAAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005911 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0051716 GO:0055028 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711
Pfam Domains
Protein Families
Pkinase

Protein Analysis

321

Amino Acids

37.32

Weight (kDa)

9.45

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 1.6e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 270 1.5e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 118 - 206 6.4e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AciI CCGC 2 cut(s) 532, 775
AclWI GGATC 1 cut(s) 480
AcsI RAATTY 1 cut(s) 943
AcuI CTGAAG 4 cut(s) 161, 224, 827, 899
AfaI GTAC 5 cut(s) 87, 167, 353, 876, 884
AfiI CCNNNNNNNGG 2 cut(s) 641, 893
AgsI TTSAA 6 cut(s) 280, 307, 566, 649, 782, 942
AjnI CCWGG 1 cut(s) 635
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 31, 67, 145, 903
AluI AGCT 4 cut(s) 31, 67, 145, 903
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 816
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 2 cut(s) 409, 451
ApoI RAATTY 1 cut(s) 943
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AseI ATTAAT 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 257, 409, 870
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 2 cut(s) 257, 870
AvrII CCTAGG 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 866, 899
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 134, 789
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 2 cut(s) 742, 906
BciT130I CCWGG 1 cut(s) 637
BciVI GTATCC 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 3 cut(s) 74, 413, 906
BfmI CTRYAG 1 cut(s) 708
BfuI GTATCC 1 cut(s) 757
BlnI CCTAGG 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 637
Bme18I GGWCC 2 cut(s) 257, 870
BmgT120I GGNCC 3 cut(s) 257, 409, 870
BmiI GGNNCC 2 cut(s) 120, 258
BmrFI CCNGG 1 cut(s) 637
BmsI GCATC 2 cut(s) 145, 309
BpiI GAAGAC 2 cut(s) 134, 789
BpmI CTGGAG 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 412, 635
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 2 cut(s) 641, 893
Bse1I ACTGG 2 cut(s) 120, 872
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 412, 635
BseGI GGATG 4 cut(s) 136, 586, 730, 917
BseLI CCNNNNNNNGG 2 cut(s) 641, 893
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 2 cut(s) 120, 872
BseRI GAGGAG 1 cut(s) 113
BseYI CCCAGC 2 cut(s) 31, 141
BshFI GGCC 2 cut(s) 411, 453
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 93, 791
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 641, 893
BsmAI GTCTC 1 cut(s) 816
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 2 cut(s) 411, 453
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 2 cut(s) 85, 165
Bsp143I GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
BspACI CCGC 2 cut(s) 532, 775
BspANI GGCC 2 cut(s) 411, 453
BspCNI CTCAG 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 120, 258
BspPI GGATC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 770
BsrGI TGTACA 2 cut(s) 85, 165
BsrI ACTGG 2 cut(s) 120, 872
BssECI CCNNGG 2 cut(s) 412, 635
BssMI GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 313, 874
Bst6I CTCTTC 1 cut(s) 803
BstAUI TGTACA 2 cut(s) 85, 165
BstC8I GCNNGC 3 cut(s) 324, 532, 655
BstDEI CTNAG 3 cut(s) 620, 738, 934
BstF5I GGATG 4 cut(s) 136, 586, 730, 917
BstKTI GATC 7 cut(s) 250, 331, 475, 586, 728, 770, 962
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
BstMWI GCNNNNNNNGC 3 cut(s) 142, 531, 536
BstNI CCWGG 1 cut(s) 637
BstNSI RCATGY 3 cut(s) 11, 172, 358
BstSCI CCNGG 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 708
BstV2I GAAGAC 2 cut(s) 134, 789
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 2 cut(s) 411, 453
BtsCI GGATG 4 cut(s) 136, 586, 730, 917
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 691
Cac8I GCNNGC 3 cut(s) 324, 532, 655
CaiI CAGNNNCTG 1 cut(s) 527
Cfr13I GGNCC 3 cut(s) 257, 409, 870
Csp6I GTAC 5 cut(s) 86, 166, 352, 875, 883
CviAII CATG 4 cut(s) 8, 169, 238, 355
CviQI GTAC 5 cut(s) 86, 166, 352, 875, 883
DdeI CTNAG 3 cut(s) 620, 738, 934
DpnI GATC 7 cut(s) 249, 330, 474, 585, 727, 769, 961
DpnII GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 257, 870
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 161, 224, 827, 899
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 4 cut(s) 11, 172, 241, 358
FaqI GGGAC 1 cut(s) 270
FatI CATG 4 cut(s) 7, 168, 237, 354
FauI CCCGC 1 cut(s) 539
FokI GGATG 4 cut(s) 123, 593, 717, 924
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 3 cut(s) 74, 413, 906
GsaI CCCAGC 2 cut(s) 35, 145
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 2 cut(s) 411, 453
HapII CCGG 2 cut(s) 93, 791
Hin1II CATG 4 cut(s) 11, 172, 241, 358
HincII GTYRAC 2 cut(s) 547, 702
HindII GTYRAC 2 cut(s) 547, 702
HinfI GANTC 5 cut(s) 155, 192, 345, 481, 590
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 93, 791
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 300, 547, 702
Hpy188I TCNGA 2 cut(s) 62, 739
Hpy188III TCNNGA 7 cut(s) 363, 380, 478, 587, 821, 836, 906
Hpy8I GTNNAC 3 cut(s) 300, 547, 702
HpyAV CCTTC 5 cut(s) 383, 570, 641, 643, 833
HpyCH4III ACNGT 2 cut(s) 313, 874
HpyCH4V TGCA 6 cut(s) 326, 358, 458, 539, 723, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 531, 536
HpyF3I CTNAG 3 cut(s) 620, 738, 934
Hsp92II CATG 4 cut(s) 11, 172, 241, 358
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
LmnI GCTCC 1 cut(s) 4
LweI GCATC 2 cut(s) 145, 309
MaeI CTAG 3 cut(s) 74, 413, 906
MaeIII GTNAC 1 cut(s) 224
MalI GATC 7 cut(s) 249, 330, 474, 585, 727, 769, 961
MboI GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
MboII GAAGA 7 cut(s) 52, 139, 167, 242, 281, 794, 820
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 6 cut(s) 161, 332, 336, 561, 848, 943
MlyI GAGTC 3 cut(s) 164, 354, 475
MseI TTAA 5 cut(s) 27, 335, 339, 404, 546
MspI CCGG 2 cut(s) 93, 791
MspR9I CCNGG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 3 cut(s) 142, 531, 536
NdeII GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
NlaIII CATG 4 cut(s) 11, 172, 241, 358
NlaIV GGNNCC 2 cut(s) 120, 258
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 3 cut(s) 11, 172, 358
PacI TTAATTAA 1 cut(s) 339
PfeI GAWTC 2 cut(s) 192, 590
PleI GAGTC 3 cut(s) 163, 353, 475
PpsI GAGTC 3 cut(s) 163, 353, 475
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 2 cut(s) 31, 141
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 2 cut(s) 120, 258
PspPI GGNCC 3 cut(s) 257, 409, 870
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 5 cut(s) 87, 167, 353, 876, 884
RsaNI GTAC 5 cut(s) 86, 166, 352, 875, 883
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 27, 335, 339, 404, 546
Sau3AI GATC 7 cut(s) 247, 328, 472, 583, 725, 767, 959
Sau96I GGNCC 3 cut(s) 257, 409, 870
SchI GAGTC 3 cut(s) 164, 354, 475
ScrFI CCNGG 1 cut(s) 637
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 145, 309
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 257, 870
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 6 cut(s) 161, 332, 336, 561, 848, 943
SsiI CCGC 2 cut(s) 532, 775
SspMI CTAG 3 cut(s) 74, 413, 906
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 635
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 2 cut(s) 313, 874
TaqI TCGA 3 cut(s) 348, 820, 835
TasI AATT 6 cut(s) 161, 332, 336, 561, 848, 943
TatI WGTACW 3 cut(s) 85, 165, 351
TfiI GAWTC 2 cut(s) 192, 590
Tru1I TTAA 5 cut(s) 27, 335, 339, 404, 546
Tru9I TTAA 5 cut(s) 27, 335, 339, 404, 546
TscAI CASTG 2 cut(s) 532, 691
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 365, 789
TspRI CASTG 2 cut(s) 532, 691
VpaK11BI GGWCC 2 cut(s) 257, 870
VspI ATTAAT 1 cut(s) 335
XapI RAATTY 1 cut(s) 943
XbaI TCTAGA 1 cut(s) 905
XceI RCATGY 3 cut(s) 11, 172, 358
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 3 cut(s) 74, 413, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.