Rorug06G0190400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006989
Physical Location & Seq
Forward (+)
30529918 .. 30538531
8614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0190400.1

Sequence Viewer

Length: 1293 bp
ATGTGGAGGAACTCGGTGAGTTTCTCGTCCAAGTTGATCAATTCCAACAAGTCGCTGTTCAATCCTTCCAGTTGTTCTGGAGCAAACGACGTCGTTCGGCCACTGCTGCACTGCCGCTCCGAATTCCATCCCTATTCCTCTTCACCCCCGTCGTCTTCAGATTATCTCAAACTAGGTTTTCAGCCGTCCGATGGACTCCCAGCCCTTTCGGCTGTTGCCGTTGATCTCGCGTCTTTGGCCTCCAAATCTGCCCAGCTGACTCGTCACTATGGCCGCTGCTATTGGGAGCTCTCCAAAGCTCGCCTCAGCATGCTAGTTGTTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAGTGCCGTCGATTTTGCTGGACTTTGTTGCACATGTGCTGGTACAATGATGGTTGCAGCATCCGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAAATGAAGAGAACAATGCAAAGACCACTACCTTCAGGACGCATTACGAGGCCTCATGCAGTCGCGTGGGCATGTACTGCTGGTTTAGCTGGCACTGCTTTGTTGGCAAGCAAGGCTAATATGCTGGCAGCTGGTCTTGCTGCTTCCAATTTAATACTTTATGCATTCGTGTATACTCCATTGAAGCAAATTCACCCAGTAAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCACTTCTAGGTTGGGCGGCAGCATCTGGCCAGGTTTCACTCAATGCAATGATTCTCCCAGCTGCGCTATATTTTTGGCAAATACCTCATTTTATGGCCCTTGCATACTTATGTCGCAATGACTATGCTGCTGGAGGGTTTAGGATGTTCTCTCTTGCTGATGCTTCTGGTCAAAGAACAGCTTCAGTGGCTTTAAGGAATTGTGCTTACCTTATCCCTTTGGGATATGTGGCATATGATTGGGGTGTCACTTCTGGATGGTTTTGTATTGAATCTACCATTCTTACTCTCGCAATAAGTGCAACGGCATTTTCATTCTATAAAGACCGTACGACACATAAAGCTAGGAGGATGTTTCACGCCAGCCTTCTTTATCTTCCTGTATTTATGTCAGGGATTCTGTTTCACCGTATCTCTGATAATCAGCAATGCCTTGTTGAAGAGAGTTCACAGCGTATTGCTGAGCTTTCAATGTCCTCACAAGATGGAAATGTCATCCAGAAAGACAAATTAAAGAAGCATCGCCCACCTGTATCATATGCTTCTGTTGCACCTTTTCCTTTCCTTCCGGTTCCGTCATATGTGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005911 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0051716 GO:0055028 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711
Pfam Domains
Protein Families
Pkinase

Protein Analysis

430

Amino Acids

46.45

Weight (kDa)

9.43

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 107 - 355 5.7e-50 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 635
AccII CGCG 2 cut(s) 230, 527
AciI CCGC 4 cut(s) 115, 274, 420, 716
AcoI YGGCCR 3 cut(s) 98, 271, 727
AcsI RAATTY 2 cut(s) 122, 651
AcuI CTGAAG 3 cut(s) 141, 480, 867
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 400, 538, 1030
AfiI CCNNNNNNNGG 2 cut(s) 191, 707
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 5 cut(s) 61, 646, 971, 1139, 1170
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 9 cut(s) 256, 289, 299, 551, 593, 761, 881, 1043, 1165
AluI AGCT 9 cut(s) 256, 289, 299, 551, 593, 761, 881, 1043, 1165
Alw21I GWGCWC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 6 cut(s) 98, 237, 271, 512, 727, 795
ApeKI GCWGC 8 cut(s) 106, 276, 413, 590, 602, 719, 761, 827
ApoI RAATTY 2 cut(s) 122, 651
Asp700I GAANNNNTTC 1 cut(s) 880
AspLEI GCGC 2 cut(s) 680, 766
AspS9I GGNCC 1 cut(s) 796
AsuHPI GGTGA 4 cut(s) 28, 135, 647, 1097
BalI TGGCCA 1 cut(s) 729
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 2 cut(s) 147, 1278
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 305
BbvI GCAGC 8 cut(s) 93, 263, 425, 589, 602, 731, 748, 814
BccI CCATC 5 cut(s) 135, 185, 400, 951, 1178
BceAI ACGGC 4 cut(s) 169, 203, 347, 1020
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 36
BfaI CTAG 4 cut(s) 173, 314, 707, 1044
BfoI RGCGCY 1 cut(s) 681
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 1161
Bme1390I CCNGG 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 796
BmiI GGNNCC 1 cut(s) 1272
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 5 cut(s) 425, 448, 731, 850, 1228
BmuI ACTGGG 1 cut(s) 653
BpiI GAAGAC 2 cut(s) 147, 1278
BpmI CTGGAG 2 cut(s) 99, 852
Bpu10I CCTNAGC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 1161
BsaHI GRCGYC 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 1267
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 707
Bse1I ACTGG 3 cut(s) 69, 340, 659
Bse3DI GCAATG 3 cut(s) 753, 823, 1133
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 6 cut(s) 127, 416, 849, 962, 1056, 1194
BseLI CCNNNNNNNGG 2 cut(s) 191, 707
BseMI GCAATG 3 cut(s) 753, 823, 1133
BseMII CTCAG 2 cut(s) 319, 1152
BseNI ACTGG 3 cut(s) 69, 340, 659
BseXI GCAGC 8 cut(s) 93, 263, 425, 589, 602, 731, 748, 814
BseYI CCCAGC 3 cut(s) 199, 252, 757
BsgI GTGCAG 1 cut(s) 92
Bsh1236I CGCG 2 cut(s) 230, 527
BshFI GGCC 6 cut(s) 100, 239, 273, 514, 729, 797
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 1268
BsiWI CGTACG 1 cut(s) 1028
BslI CCNNNNNNNGG 2 cut(s) 191, 707
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 6 cut(s) 100, 239, 273, 514, 729, 797
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 36, 223
Bsp1720I GCTNAGC 1 cut(s) 1161
BspACI CCGC 4 cut(s) 115, 274, 420, 716
BspANI GGCC 6 cut(s) 100, 239, 273, 514, 729, 797
BspCNI CTCAG 2 cut(s) 318, 1153
BspFNI CGCG 2 cut(s) 230, 527
BspHI TCATGA 1 cut(s) 1289
BspLI GGNNCC 1 cut(s) 1272
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 3 cut(s) 753, 823, 1133
BsrI ACTGG 3 cut(s) 69, 340, 659
BssMI GATC 2 cut(s) 36, 223
BssNAI GTATAC 1 cut(s) 636
BssNI GRCGYC 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 2 cut(s) 1028, 1109
Bst6I CTCTTC 3 cut(s) 145, 464, 1134
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 2 cut(s) 539, 998
BstC8I GCNNGC 6 cut(s) 301, 311, 553, 571, 588, 1063
BstDEI CTNAG 2 cut(s) 305, 1161
BstF5I GGATG 6 cut(s) 127, 416, 849, 962, 1056, 1194
BstFNI CGCG 2 cut(s) 230, 527
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 2 cut(s) 680, 766
BstKTI GATC 2 cut(s) 39, 226
BstMBI GATC 2 cut(s) 36, 223
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 3 cut(s) 313, 393, 537
BstSCI CCNGG 1 cut(s) 729
BstUI CGCG 2 cut(s) 230, 527
BstV1I GCAGC 8 cut(s) 93, 263, 425, 589, 602, 731, 748, 814
BstV2I GAAGAC 2 cut(s) 147, 1278
BstZ17I GTATAC 1 cut(s) 636
BsuRI GGCC 6 cut(s) 100, 239, 273, 514, 729, 797
BtgZI GCGATG 1 cut(s) 1205
BtsCI GGATG 6 cut(s) 127, 416, 849, 962, 1056, 1194
BtsI GCAGTG 4 cut(s) 101, 109, 364, 555
BtsIMutI CAGTG 5 cut(s) 101, 109, 364, 555, 891
Cac8I GCNNGC 6 cut(s) 301, 311, 553, 571, 588, 1063
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 1289
CfoI GCGC 2 cut(s) 680, 766
Cfr13I GGNCC 1 cut(s) 796
CseI GACGC 2 cut(s) 219, 510
Csp6I GTAC 3 cut(s) 399, 537, 1029
CviAII CATG 6 cut(s) 310, 390, 518, 534, 669, 1290
CviQI GTAC 3 cut(s) 399, 537, 1029
DdeI CTNAG 2 cut(s) 305, 1161
DpnI GATC 2 cut(s) 38, 225
DpnII GATC 2 cut(s) 36, 223
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 3 cut(s) 98, 271, 727
Eam1104I CTCTTC 3 cut(s) 145, 464, 1134
EarI CTCTTC 3 cut(s) 145, 464, 1134
Ecl136II GAGCTC 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 3 cut(s) 141, 480, 867
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 6 cut(s) 313, 393, 521, 537, 672, 1293
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FatI CATG 6 cut(s) 309, 389, 517, 533, 668, 1289
FauNDI CATATG 3 cut(s) 934, 1237, 1279
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 635
FokI GGATG 6 cut(s) 114, 403, 856, 969, 1063, 1181
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 4 cut(s) 173, 314, 707, 1044
GlaI GCGC 2 cut(s) 679, 765
GsaI CCCAGC 3 cut(s) 203, 256, 761
GsuI CTGGAG 2 cut(s) 99, 852
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 6 cut(s) 100, 239, 273, 514, 729, 797
HapII CCGG 1 cut(s) 1268
HgaI GACGC 2 cut(s) 219, 510
HhaI GCGC 2 cut(s) 680, 766
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 6 cut(s) 313, 393, 521, 537, 672, 1293
Hin6I GCGC 2 cut(s) 678, 764
HinP1I GCGC 2 cut(s) 678, 764
HinfI GANTC 5 cut(s) 195, 259, 751, 971, 1096
HpaII CCGG 1 cut(s) 1268
HphI GGTGA 4 cut(s) 28, 135, 647, 1097
Hpy166II GTNNAC 2 cut(s) 636, 1148
Hpy188I TCNGA 4 cut(s) 121, 160, 190, 1117
Hpy188III TCNNGA 7 cut(s) 78, 330, 445, 498, 954, 1198, 1290
Hpy8I GTNNAC 2 cut(s) 636, 1148
Hpy99I CGWCG 4 cut(s) 92, 95, 154, 368
HpyAV CCTTC 4 cut(s) 75, 504, 1076, 1274
HpyCH4III ACNGT 2 cut(s) 1028, 1109
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 305, 1161
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 6 cut(s) 313, 393, 521, 537, 672, 1293
HspAI GCGC 2 cut(s) 678, 764
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 2 cut(s) 36, 223
LmnI GCTCC 3 cut(s) 80, 122, 286
Lsp1109I GCAGC 8 cut(s) 93, 263, 425, 589, 602, 731, 748, 814
LweI GCATC 5 cut(s) 425, 448, 731, 850, 1228
MaeI CTAG 4 cut(s) 173, 314, 707, 1044
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 263, 946
MalI GATC 2 cut(s) 38, 225
MbiI CCGCTC 1 cut(s) 117
MboI GATC 2 cut(s) 36, 223
MboII GAAGA 6 cut(s) 132, 147, 481, 1067, 1151, 1278
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 6 cut(s) 40, 122, 610, 651, 898, 1208
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 2 cut(s) 189, 253
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 9 cut(s) 148, 250, 314, 504, 525, 795, 827, 1041, 1186
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 1 cut(s) 729
MseI TTAA 4 cut(s) 431, 614, 893, 1211
MslI CAYNNNNRTG 1 cut(s) 808
Msp20I TGGCCA 1 cut(s) 729
MspA1I CMGCKG 4 cut(s) 256, 276, 593, 761
MspI CCGG 1 cut(s) 1268
MspR9I CCNGG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 2 cut(s) 230, 527
NdeI CATATG 3 cut(s) 934, 1237, 1279
NdeII GATC 2 cut(s) 36, 223
NlaIII CATG 6 cut(s) 313, 393, 521, 537, 672, 1293
NlaIV GGNNCC 1 cut(s) 1272
NmuCI GTSAC 2 cut(s) 263, 946
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 3 cut(s) 313, 393, 537
PaeI GCATGC 1 cut(s) 313
PagI TCATGA 1 cut(s) 1289
PceI AGGCCT 1 cut(s) 514
PciI ACATGT 1 cut(s) 389
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 3 cut(s) 751, 971, 1096
Pfl23II CGTACG 1 cut(s) 1028
PleI GAGTC 2 cut(s) 189, 253
PpsI GAGTC 2 cut(s) 189, 253
PscI ACATGT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 729
PspFI CCCAGC 3 cut(s) 199, 252, 757
PspGI CCWGG 1 cut(s) 729
PspLI CGTACG 1 cut(s) 1028
PspN4I GGNNCC 1 cut(s) 1272
PspPI GGNCC 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 725
PvuII CAGCTG 3 cut(s) 256, 593, 761
RsaI GTAC 3 cut(s) 400, 538, 1030
RsaNI GTAC 3 cut(s) 399, 537, 1029
RseI CAYNNNNRTG 1 cut(s) 808
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 4 cut(s) 431, 614, 893, 1211
Sau3AI GATC 2 cut(s) 36, 223
Sau96I GGNCC 1 cut(s) 796
SchI GAGTC 2 cut(s) 189, 253
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 5 cut(s) 425, 448, 731, 850, 1228
SmiMI CAYNNNNRTG 1 cut(s) 808
SphI GCATGC 1 cut(s) 313
Sse9I AATT 6 cut(s) 40, 122, 610, 651, 898, 1208
SseBI AGGCCT 1 cut(s) 514
SsiI CCGC 4 cut(s) 115, 274, 420, 716
SspMI CTAG 4 cut(s) 173, 314, 707, 1044
SstI GAGCTC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 1 cut(s) 729
TaaI ACNGT 2 cut(s) 1028, 1109
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 366, 444
TasI AATT 6 cut(s) 40, 122, 610, 651, 898, 1208
TatI WGTACW 1 cut(s) 536
TauI GCSGC 3 cut(s) 117, 276, 719
TfiI GAWTC 3 cut(s) 751, 971, 1096
Tru1I TTAA 4 cut(s) 431, 614, 893, 1211
Tru9I TTAA 4 cut(s) 431, 614, 893, 1211
TscAI CASTG 5 cut(s) 108, 116, 364, 562, 891
TseFI GTSAC 2 cut(s) 263, 946
TseI GCWGC 8 cut(s) 106, 276, 413, 590, 602, 719, 761, 827
Tsp45I GTSAC 2 cut(s) 263, 946
TspDTI ATGAA 3 cut(s) 482, 1002, 1278
TspGWI ACGGA 1 cut(s) 1263
TspRI CASTG 5 cut(s) 108, 116, 364, 562, 891
XapI RAATTY 2 cut(s) 122, 651
XceI RCATGY 3 cut(s) 313, 393, 537
XcmI CCANNNNNNNNNTGG 2 cut(s) 666, 708
XmiI GTMKAC 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 4 cut(s) 173, 314, 707, 1044
ZraI GACGTC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.