RLG00000012477
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
19151677 .. 19156067
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012477

Sequence Viewer

Length: 1371 bp
ATGGAGCATGTGATTGCTGGCAAGTTTAAGCTGGGGAGGAAGATTGGGAGTGGCTCTTTTGGAGAACTCTATCTAGGTGTCAATGTACAAACCGGAGAGGAGGTTGCTGTGAAACTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCCAAATTGTACATGCTTCTTCAGGGAGGAACGGGAATCCCCCACCTGAAGTGGTTTGGAGTTGAGGGTGACTACAACGTCATGGTTATTGATCTTCTTGGACCAAGTTTGGAAGATTTGTTCAACTATTGTAATAGGAAGTTTACATTGAAAACAGTTTTGATGCTTGCAGATCAATTAATTAACAGAGTCGAGTACATGCACTCAAGAGGTTTCCTTCATCGTGATATAAAACCTGACAACTTTTTAATGGGCCTAGGGCGTAAAGCCAATCAGGTATATGCTATTGATTATGGCCTTGCAAAGAAGTATAGGGATCTCCAGACTCACAAGCACATACCATACAGGGAGAACAAGAACCTCACAGGTACTGCCCGCTATGCAAGTGTTAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCACTTGGTTATGTGCTTATGTATTTCCTAAGAGGAAGCCTTCCCTGGCAAGGATTGAAGGCTGGCACAAAAAAGCAAAAATACGACAAAATCAGTGAAAAGAAAATGTCAACTCCTATAGAGGTGCTTTGCAGATCACATCCATCTGAGTTTGTATCCTACTTTCACTACTGCCGATCATTGCGGTTTGAAGACAAGCCGGATTACTCATACCTGAAGAGGCTTTTTCGAGACTTATTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACTGTACTGAAGTACCCCCAGATTGGTGGAAGCTCTAGAGGATGGCATTCCAGTGGAAAAGCAGGTGCAAATGCGGGACCATCTGGGGAAAGACCTGAAAGAGTCTCAGTTGGAAAAGAGATTCGAGAAAGATTCTCAGGTGCAGTTGAAGCATTTTCGAGGAGAAATACCACAGCTTCTAGTCCACGTCAAGATCACTACAAGCACAGGTCTTTTGAGGATGCAACTCCACCATCCCGAGACACGCCCCATGATTCTGAAAGGGGACGCAATTCCTCCCGATATATTAGCACTTCAAGGAAGGCTGTGGCCAGCAGTAAGCCAAGTTCCTCAGGTGAGCCCAGTGAAGGTCGCACAAGCCGACTACTCTCAAACAGTAGCCGCCCGTCTACTGGGCACCACCGAGTTCATTCTGGGCATGAATCCAAGCGCCCTGTTGCTACAAGAGGGACCCGTGATGATCCTCTCCGTAGCTTCGAGCTCCTCTCAATCAGGAAGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

52.04

Weight (kDa)

9.75

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 4.5e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 269 4.2e-13 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 118 - 206 1.2e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 923
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 1266
AccI GTMKAC 1 cut(s) 1259
AciI CCGC 4 cut(s) 532, 775, 944, 1252
AclWI GGATC 2 cut(s) 480, 1325
AcoI YGGCCR 1 cut(s) 1179
AcuI CTGAAG 4 cut(s) 161, 224, 827, 899
AfaI GTAC 6 cut(s) 87, 167, 353, 526, 876, 884
AfiI CCNNNNNNNGG 4 cut(s) 641, 893, 1217, 1262
AgsI TTSAA 7 cut(s) 280, 307, 566, 649, 782, 1019, 1167
AjiI CACGTC 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 635
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 6 cut(s) 31, 145, 903, 1046, 1344, 1351
AluI AGCT 6 cut(s) 31, 145, 903, 1046, 1344, 1351
Alw21I GWGCWC 1 cut(s) 1353
Alw26I GTCTC 3 cut(s) 816, 979, 1104
AlwI GGATC 2 cut(s) 480, 1325
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 1107
AoxI GGCC 3 cut(s) 409, 451, 1179
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AseI ATTAAT 1 cut(s) 335
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 1 cut(s) 1302
AspS9I GGNCC 4 cut(s) 257, 409, 947, 1320
AsuHPI GGTGA 2 cut(s) 236, 1217
AvaI CYCGRG 1 cut(s) 1107
AvaII GGWCC 3 cut(s) 257, 947, 1320
AvrII CCTAGG 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 1201
BaeGI GKGCMC 1 cut(s) 1269
BaeI ACNNNNGTAYC 2 cut(s) 866, 899
BalI TGGCCA 1 cut(s) 1181
BanI GGYRCC 1 cut(s) 1266
BanII GRGCYC 2 cut(s) 1212, 1353
BbsI GAAGAC 2 cut(s) 134, 789
Bbv12I GWGCWC 1 cut(s) 1353
BccI CCATC 4 cut(s) 742, 906, 958, 1111
BciT130I CCWGG 1 cut(s) 637
BciVI GTATCC 1 cut(s) 757
BcoDI GTCTC 3 cut(s) 816, 979, 1104
BfaI CTAG 4 cut(s) 74, 413, 906, 1050
BfmI CTRYAG 1 cut(s) 708
BfoI RGCGCY 1 cut(s) 1303
BfuAI ACCTGC 1 cut(s) 923
BfuI GTATCC 1 cut(s) 757
BisI GCNGC 1 cut(s) 1252
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 1 cut(s) 1253
Bme1390I CCNGG 1 cut(s) 637
Bme18I GGWCC 3 cut(s) 257, 947, 1320
BmeT110I CYCGRG 1 cut(s) 1107
BmgBI CACGTC 1 cut(s) 1058
BmgT120I GGNCC 4 cut(s) 257, 409, 947, 1320
BmiI GGNNCC 5 cut(s) 120, 948, 1268, 1321, 1322
BmrFI CCNGG 1 cut(s) 637
BmrI ACTGGG 2 cut(s) 1206, 1272
BmsI GCATC 3 cut(s) 145, 309, 1081
BmuI ACTGGG 2 cut(s) 1206, 1272
BpiI GAAGAC 2 cut(s) 134, 789
BplI GAGNNNNNCTC 1 cut(s) 1340
BpmI CTGGAG 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 412, 635
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 641, 893, 1217, 1262
Bse1I ACTGG 5 cut(s) 120, 872, 921, 1212, 1267
Bse21I CCTNAGG 1 cut(s) 1201
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 412, 635
BseGI GGATG 6 cut(s) 136, 586, 730, 917, 1096, 1103
BseLI CCNNNNNNNGG 4 cut(s) 641, 893, 1217, 1262
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 4 cut(s) 729, 990, 1020, 1215
BseNI ACTGG 5 cut(s) 120, 872, 921, 1212, 1267
BseRI GAGGAG 3 cut(s) 113, 1045, 1343
BseSI GKGCMC 1 cut(s) 1269
BseYI CCCAGC 2 cut(s) 31, 141
BsgI GTGCAG 1 cut(s) 1032
BshFI GGCC 3 cut(s) 411, 453, 1181
BshNI GGYRCC 1 cut(s) 1266
BsiHKAI GWGCWC 1 cut(s) 1353
BsiHKCI CYCGRG 1 cut(s) 1107
BsiSI CCGG 2 cut(s) 93, 791
BslFI GGGAC 3 cut(s) 960, 1149, 1333
BslI CCNNNNNNNGG 4 cut(s) 641, 893, 1217, 1262
BsmAI GTCTC 3 cut(s) 816, 979, 1104
BsmFI GGGAC 3 cut(s) 960, 1149, 1333
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 411, 453, 1181
BsoBI CYCGRG 1 cut(s) 1107
Bsp1286I GDGCHC 3 cut(s) 1212, 1269, 1353
Bsp1407I TGTACA 2 cut(s) 85, 165
Bsp143I GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
BspACI CCGC 4 cut(s) 532, 775, 944, 1252
BspANI GGCC 3 cut(s) 411, 453, 1181
BspCNI CTCAG 4 cut(s) 730, 989, 1019, 1214
BspLI GGNNCC 5 cut(s) 120, 948, 1268, 1321, 1322
BspMI ACCTGC 1 cut(s) 923
BspPI GGATC 2 cut(s) 480, 1325
BspT107I GGYRCC 1 cut(s) 1266
BsrDI GCAATG 1 cut(s) 770
BsrGI TGTACA 2 cut(s) 85, 165
BsrI ACTGG 5 cut(s) 120, 872, 921, 1212, 1267
BssECI CCNNGG 2 cut(s) 412, 635
BssMI GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 3 cut(s) 313, 874, 1247
Bst6I CTCTTC 1 cut(s) 803
BstAUI TGTACA 2 cut(s) 85, 165
BstC8I GCNNGC 5 cut(s) 19, 324, 532, 655, 1183
BstDEI CTNAG 5 cut(s) 620, 738, 976, 1006, 1201
BstF5I GGATG 6 cut(s) 136, 586, 730, 917, 1096, 1103
BstH2I RGCGCY 1 cut(s) 1303
BstHHI GCGC 1 cut(s) 1302
BstKTI GATC 8 cut(s) 250, 331, 475, 586, 728, 770, 1066, 1333
BstMAI GTCTC 3 cut(s) 816, 979, 1104
BstMBI GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
BstMWI GCNNNNNNNGC 3 cut(s) 142, 536, 1019
BstNI CCWGG 1 cut(s) 637
BstNSI RCATGY 3 cut(s) 11, 172, 358
BstSCI CCNGG 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 1269
BstV2I GAAGAC 2 cut(s) 134, 789
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 1201
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 3 cut(s) 411, 453, 1181
BtrI CACGTC 1 cut(s) 1058
BtsCI GGATG 6 cut(s) 136, 586, 730, 917, 1096, 1103
BtsIMutI CAGTG 3 cut(s) 691, 928, 1219
BveI ACCTGC 1 cut(s) 923
Cac8I GCNNGC 5 cut(s) 19, 324, 532, 655, 1183
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 1302
Cfr13I GGNCC 4 cut(s) 257, 409, 947, 1320
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 6 cut(s) 86, 166, 352, 525, 875, 883
CviAII CATG 6 cut(s) 8, 169, 238, 355, 1121, 1289
CviQI GTAC 6 cut(s) 86, 166, 352, 525, 875, 883
DdeI CTNAG 5 cut(s) 620, 738, 976, 1006, 1201
DpnI GATC 8 cut(s) 249, 330, 474, 585, 727, 769, 1065, 1332
DpnII GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 1351
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 2 cut(s) 1212, 1353
Eco47I GGWCC 3 cut(s) 257, 947, 1320
Eco53kI GAGCTC 1 cut(s) 1351
Eco57I CTGAAG 4 cut(s) 161, 224, 827, 899
Eco81I CCTNAGG 1 cut(s) 1201
Eco88I CYCGRG 1 cut(s) 1107
EcoICRI GAGCTC 1 cut(s) 1351
EcoO109I RGGNCCY 1 cut(s) 1320
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 412
EcoT38I GRGCYC 2 cut(s) 1212, 1353
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 6 cut(s) 11, 172, 241, 358, 1124, 1292
FaqI GGGAC 3 cut(s) 960, 1149, 1333
FatI CATG 6 cut(s) 7, 168, 237, 354, 1120, 1288
FauI CCCGC 2 cut(s) 539, 937
FblI GTMKAC 1 cut(s) 1259
Fnu4HI GCNGC 1 cut(s) 1252
FokI GGATG 6 cut(s) 123, 593, 717, 924, 1090, 1103
FriOI GRGCYC 2 cut(s) 1212, 1353
Fsp4HI GCNGC 1 cut(s) 1252
FspBI CTAG 4 cut(s) 74, 413, 906, 1050
GlaI GCGC 1 cut(s) 1301
GluI GCNGC 1 cut(s) 1252
GsaI CCCAGC 2 cut(s) 35, 145
GsuI CTGGAG 1 cut(s) 461
HaeII RGCGCY 1 cut(s) 1303
HaeIII GGCC 3 cut(s) 411, 453, 1181
HapII CCGG 2 cut(s) 93, 791
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 1 cut(s) 1302
Hin1II CATG 6 cut(s) 11, 172, 241, 358, 1124, 1292
Hin6I GCGC 1 cut(s) 1300
HinP1I GCGC 1 cut(s) 1300
HincII GTYRAC 2 cut(s) 547, 702
HindII GTYRAC 2 cut(s) 547, 702
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 93, 791
HphI GGTGA 2 cut(s) 236, 1217
Hpy166II GTNNAC 5 cut(s) 300, 547, 702, 1055, 1260
Hpy188I TCNGA 2 cut(s) 739, 1129
Hpy8I GTNNAC 5 cut(s) 300, 547, 702, 1055, 1260
HpyAV CCTTC 7 cut(s) 383, 570, 641, 643, 833, 1165, 1211
HpyCH4III ACNGT 3 cut(s) 313, 874, 1247
HpyCH4IV ACGT 2 cut(s) 234, 1057
HpyCH4V TGCA 8 cut(s) 326, 358, 458, 539, 723, 938, 1013, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 536, 1019
HpyF3I CTNAG 5 cut(s) 620, 738, 976, 1006, 1201
HpySE526I ACGT 2 cut(s) 234, 1057
Hsp92II CATG 6 cut(s) 11, 172, 241, 358, 1124, 1292
HspAI GCGC 1 cut(s) 1300
KflI GGGWCCC 1 cut(s) 1320
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
LmnI GCTCC 2 cut(s) 4, 1356
LweI GCATC 3 cut(s) 145, 309, 1081
MaeI CTAG 4 cut(s) 74, 413, 906, 1050
MaeII ACGT 2 cut(s) 234, 1057
MaeIII GTNAC 1 cut(s) 224
MalI GATC 8 cut(s) 249, 330, 474, 585, 727, 769, 1065, 1332
MboI GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
MboII GAAGA 7 cut(s) 52, 139, 167, 242, 281, 794, 820
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 1212, 1269, 1353
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 6 cut(s) 161, 332, 336, 561, 848, 1141
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 4 cut(s) 164, 354, 475, 981
MmeI TCCRAC 1 cut(s) 961
Mox20I TGGCCA 1 cut(s) 1181
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 5 cut(s) 27, 335, 339, 404, 546
MslI CAYNNNNRTG 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 1181
MspI CCGG 2 cut(s) 93, 791
MspR9I CCNGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 3 cut(s) 142, 536, 1019
NdeII GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
NlaIII CATG 6 cut(s) 11, 172, 241, 358, 1124, 1292
NlaIV GGNNCC 5 cut(s) 120, 948, 1268, 1321, 1322
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 3 cut(s) 11, 172, 358
PacI TTAATTAA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 923
PcsI WCGNNNNNNNCGW 1 cut(s) 1228
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 6 cut(s) 192, 590, 991, 1002, 1124, 1292
PkrI GCNGC 1 cut(s) 1253
PleI GAGTC 4 cut(s) 163, 353, 475, 980
PpsI GAGTC 4 cut(s) 163, 353, 475, 980
PpuMI RGGWCCY 1 cut(s) 1320
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 1353
Psp5II RGGWCCY 1 cut(s) 1320
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 2 cut(s) 31, 141
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 5 cut(s) 120, 948, 1268, 1321, 1322
PspPI GGNCC 4 cut(s) 257, 409, 947, 1320
PspPPI RGGWCCY 1 cut(s) 1320
PsrI GAACNNNNNNTAC 2 cut(s) 1180, 1212
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 6 cut(s) 87, 167, 353, 526, 876, 884
RsaNI GTAC 6 cut(s) 86, 166, 352, 525, 875, 883
RseI CAYNNNNRTG 1 cut(s) 921
SacI GAGCTC 1 cut(s) 1353
SaqAI TTAA 5 cut(s) 27, 335, 339, 404, 546
SatI GCNGC 1 cut(s) 1252
Sau3AI GATC 8 cut(s) 247, 328, 472, 583, 725, 767, 1063, 1330
Sau96I GGNCC 4 cut(s) 257, 409, 947, 1320
SchI GAGTC 4 cut(s) 164, 354, 475, 981
ScrFI CCNGG 1 cut(s) 637
SduI GDGCHC 3 cut(s) 1212, 1269, 1353
SfaNI GCATC 3 cut(s) 145, 309, 1081
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 3 cut(s) 257, 947, 1320
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 6 cut(s) 161, 332, 336, 561, 848, 1141
SsiI CCGC 4 cut(s) 532, 775, 944, 1252
SspMI CTAG 4 cut(s) 74, 413, 906, 1050
SstI GAGCTC 1 cut(s) 1353
StyD4I CCNGG 1 cut(s) 635
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 313, 874, 1247
TaiI ACGT 2 cut(s) 237, 1060
TaqI TCGA 6 cut(s) 348, 820, 835, 994, 1028, 1347
TasI AATT 6 cut(s) 161, 332, 336, 561, 848, 1141
TatI WGTACW 4 cut(s) 85, 165, 351, 874
TauI GCSGC 1 cut(s) 1254
TfiI GAWTC 6 cut(s) 192, 590, 991, 1002, 1124, 1292
Tru1I TTAA 5 cut(s) 27, 335, 339, 404, 546
Tru9I TTAA 5 cut(s) 27, 335, 339, 404, 546
TscAI CASTG 3 cut(s) 691, 928, 1219
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 365, 1268, 1305
TspGWI ACGGA 1 cut(s) 1328
TspRI CASTG 3 cut(s) 691, 928, 1219
VpaK11BI GGWCC 3 cut(s) 257, 947, 1320
VspI ATTAAT 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 905
XceI RCATGY 3 cut(s) 11, 172, 358
XmaJI CCTAGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 1259
XspI CTAG 4 cut(s) 74, 413, 906, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.