AT1G04340

HR-like lesion-inducing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011782
Physical Location & Seq
Reverse (-)
1162905 .. 1164861
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04340.1

Sequence Viewer

Length: 480 bp
ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTTTATTCATCCTCTCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCTAAAGAGTTAGCTCCAAAGCTTGATCTGACCAAAGCACATCTCTCTTCCATATTGGGAGTATCATTGCCCAACTTAGAGGTGAAACAAGTCGTGTGGGCTATTGTTGCTCTGAAAGGCCTAGGAGGCTTACTCTTTGTTATCGGCAACATCTTTGGTGCCTATCTTCTGGCTGTCTACTTGGTGGTTGTCAGTCCCATTTTATATGATTTCTACAACTATGGACCCGAGGACCGCCAATTCTCTCTTCTATTGACTGAATTCTTGCAGAGTGTTGCGCTTCTCGGGGCATTGCTATTTTTCATCGGAATGAAGAATTCAACAACGAGCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAAGCCTAAAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HR_lesion

Protein Analysis

159

Amino Acids

17.4

Weight (kDa)

9.66

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HR_lesion PF05514 1 - 138 1e-62 HR-like lesion-inducing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011782)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04340 AT5G43460 AT5G43460
fragaria_vesca FvH4_4g03211 FvH4_5g30450
malus_domestica MD13G1210700.v1.1 MD16G1213900.v1.1
prunus_persica Prupe.1G035100_v2.0.a1
pyrus_communis pycom13g18320 pycom16g17970
rosa_chinensis RchiOBHm_Chr4g0391891
rosa_laevigata RLG00000009851
rosa_multiflora Rmu_co8463711.1_g000001 Rmu_sc0000383.1_g000013 Rmu_sc0007693.1_g000011
rosa_rugosa Rorug03G0336700
rosa_samantha Rh4AG039100 Rh4BG033800
rosa_wichuraiana Rw4G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 279
AciI CCGC 2 cut(s) 57, 337
AcsI RAATTY 2 cut(s) 362, 418
AcuI CTGAAG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 73, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 5 cut(s) 104, 116, 124, 432, 473
AluI AGCT 5 cut(s) 104, 116, 124, 432, 473
Alw21I GWGCWC 1 cut(s) 434
Ama87I CYCGRG 2 cut(s) 329, 386
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 101, 473
ApoI RAATTY 2 cut(s) 362, 418
AspA2I CCTAGG 1 cut(s) 223
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 95, 326, 334
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 2 cut(s) 329, 386
AvaII GGWCC 3 cut(s) 95, 326, 334
AvrII CCTAGG 1 cut(s) 223
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 113, 460
BfaI CTAG 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 2 cut(s) 102, 474
BlnI CCTAGG 1 cut(s) 223
BlsI GCNGC 2 cut(s) 103, 475
Bme18I GGWCC 3 cut(s) 95, 326, 334
BmeT110I CYCGRG 2 cut(s) 329, 386
BmgT120I GGNCC 3 cut(s) 95, 326, 334
BmiI GGNNCC 2 cut(s) 262, 328
BoxI GACNNNNGTC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BsaJI CCNNGG 2 cut(s) 223, 330
Bse3DI GCAATG 2 cut(s) 167, 392
BseDI CCNNGG 2 cut(s) 223, 330
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 167, 392
BseXI GCAGC 2 cut(s) 113, 460
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 434
BsiHKCI CYCGRG 2 cut(s) 329, 386
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 329, 386
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 57, 337
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 262, 328
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 167, 392
BssECI CCNNGG 2 cut(s) 223, 330
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 5 cut(s) 19, 38, 154, 354, 446
BstDEI CTNAG 2 cut(s) 178, 477
BstF5I GGATG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 209, 228
BstPAI GACNNNNGTC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 113, 460
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 48
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 95, 326, 334
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
DdeI CTNAG 2 cut(s) 178, 477
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 5 cut(s) 19, 38, 154, 354, 446
EarI CTCTTC 5 cut(s) 19, 38, 154, 354, 446
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 223
Eco147I AGGCCT 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 3 cut(s) 95, 326, 334
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 467
Eco88I CYCGRG 2 cut(s) 329, 386
EcoICRI GAGCTC 1 cut(s) 432
EcoRI GAATTC 2 cut(s) 362, 418
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 223
FaiI YATR 4 cut(s) 155, 307, 309, 324
FaqI GGGAC 1 cut(s) 282
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 102, 474
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 102, 474
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 381
GluI GCNGC 2 cut(s) 102, 474
HaeIII GGCC 1 cut(s) 222
HhaI GCGC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 442, 457
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 132, 216, 410, 447
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 228
HpyF3I CTNAG 2 cut(s) 178, 477
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 121, 437
LpnPI CCDG 2 cut(s) 111, 257
Lsp1109I GCAGC 2 cut(s) 113, 460
MaeI CTAG 1 cut(s) 224
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 8 cut(s) 25, 36, 141, 260, 341, 427, 460, 463
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 3 cut(s) 341, 362, 418
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 6 cut(s) 62, 175, 221, 325, 432, 447
MslI CAYNNNNRTG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 209, 228
NdeII GATC 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 262, 328
PceI AGGCCT 1 cut(s) 222
PfeI GAWTC 1 cut(s) 442
PkrI GCNGC 2 cut(s) 103, 475
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 262, 328
PspPI GGNCC 3 cut(s) 95, 326, 334
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 434
SatI GCNGC 2 cut(s) 102, 474
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 3 cut(s) 95, 326, 334
SchI GAGTC 1 cut(s) 451
SduI GDGCHC 1 cut(s) 434
SetI ASST 6 cut(s) 106, 118, 126, 186, 434, 475
SinI GGWCC 3 cut(s) 95, 326, 334
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 3 cut(s) 341, 362, 418
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 2 cut(s) 57, 337
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 434
StuI AGGCCT 1 cut(s) 222
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 92
TasI AATT 3 cut(s) 341, 362, 418
TfiI GAWTC 1 cut(s) 442
TseI GCWGC 2 cut(s) 101, 473
TspDTI ATGAA 3 cut(s) 37, 394, 428
VpaK11BI GGWCC 3 cut(s) 95, 326, 334
XapI RAATTY 2 cut(s) 362, 418
XmaJI CCTAGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.