Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011782

Physical Location & Seq

Genomic Coordinates Reverse (-)

14391920 .. 14394045

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTTCGTCTCCTTCCTCGGCCGCGTCCTCTTCGCCTCCATCTTCATCCTCTCTGCTTGGCAAGCGTTTAATGAATTTGGTGTTGATGGTGGCCCTGCTGCAAAGGACTTGGCTCCCAAGTTTAATGTGTTCAAGAAAAATTTGTCTGCTAAGCTAGGGGTTGCAATACCGGAGATAGACGTAAGACATTTAGCTGCTGGTGTGGTAGCAATGAAAGGGCTTGGAGGACTTCTATTCGTACTTAACAGTTCCCTTGGAGCTACTCTCCTGCTTCTACAATTGGCGATTACCACTCCCCTTATCTATGATTTCTACAACTACAGTCCTGAAAACGCCAAATTTGGCATACTCCTAAATGAGTTCATGCAGCACGCAGCGCTTTTTGGTGCGCTGCTGTTCTTCATTGGCATGAAGAACTCAATCCCAAAGAGGCAAGTCAAAAAGAAGGCCGCCCCAAAAACCAAAACGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

159

Amino Acids

17.07

Weight (kDa)

9.95

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04340 AT5G43460 AT5G43460
fragaria_vesca	FvH4_4g03211 FvH4_5g30450
malus_domestica	MD13G1210700.v1.1 MD16G1213900.v1.1
prunus_persica	Prupe.1G035100_v2.0.a1
pyrus_communis	pycom13g18320 pycom16g17970
rosa_chinensis	RchiOBHm_Chr4g0391891
rosa_laevigata	RLG00000009851
rosa_multiflora	Rmu_co8463711.1_g000001 Rmu_sc0000383.1_g000013 Rmu_sc0007693.1_g000011
rosa_rugosa	Rorug03G0336700
rosa_samantha	Rh4AG039100 Rh4BG033800
rosa_wichuraiana	Rw4G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 453
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	3 cut(s)	77, 142, 341
AfaI	GTAC	1 cut(s)	243
AfeI	AGCGCT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	3 cut(s)	157, 197, 263
AluI	AGCT	3 cut(s)	157, 197, 263
Alw26I	GTCTC	1 cut(s)	16
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	3 cut(s)	22, 94, 450
ApeKI	GCWGC	5 cut(s)	101, 197, 370, 377, 394
ApoI	RAATTY	3 cut(s)	77, 142, 341
AspLEI	GCGC	2 cut(s)	382, 394
AspS9I	GGNCC	1 cut(s)	95
BbvI	GCAGC	5 cut(s)	88, 184, 381, 382, 389
BccI	CCATC	2 cut(s)	50, 83
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	7 cut(s)	25, 102, 198, 371, 378, 395, 453
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	7 cut(s)	26, 103, 199, 372, 379, 396, 454
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu1102I	GCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	19, 256
BsaWI	WCCGGW	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	19, 256
BseGI	GGATG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	5 cut(s)	88, 184, 381, 382, 389
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	24, 96, 452
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	3 cut(s)	24, 96, 452
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	25, 453
BspANI	GGCC	3 cut(s)	24, 96, 452
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	19, 256
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	251, 326
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	66, 375
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	382, 394
BstMAI	GTCTC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 379
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	5 cut(s)	88, 184, 381, 382, 389
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	24, 96, 452
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	66, 375
CfoI	GCGC	2 cut(s)	382, 394
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	367, 412
CviJI	RGCY	8 cut(s)	24, 96, 116, 157, 197, 223, 263, 452
CviKI_1	RGCY	8 cut(s)	24, 96, 116, 157, 197, 223, 263, 452
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	370, 415
FaiI	YATR	4 cut(s)	309, 350, 368, 413
FatI	CATG	2 cut(s)	366, 411
Fnu4HI	GCNGC	7 cut(s)	25, 102, 198, 371, 378, 395, 453
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	25, 102, 198, 371, 378, 395, 453
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	381, 393
GluI	GCNGC	7 cut(s)	25, 102, 198, 371, 378, 395, 453
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	24, 96, 452
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	382, 394
Hin1II	CATG	2 cut(s)	370, 415
Hin6I	GCGC	2 cut(s)	380, 392
HinP1I	GCGC	2 cut(s)	380, 392
HpaII	CCGG	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	136, 329
HpyAV	CCTTC	2 cut(s)	25, 442
HpyCH4III	ACNGT	2 cut(s)	251, 326
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	104, 167, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 379
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	370, 415
HspAI	GCGC	2 cut(s)	380, 392
LmnI	GCTCC	2 cut(s)	121, 260
LpnPI	CCDG	5 cut(s)	111, 186, 186, 284, 342
Lsp1109I	GCAGC	5 cut(s)	88, 184, 381, 382, 389
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	183
MboII	GAAGA	4 cut(s)	25, 37, 394, 427
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	4 cut(s)	77, 142, 281, 341
MnlI	CCTC	6 cut(s)	29, 41, 49, 62, 221, 426
MseI	TTAA	3 cut(s)	72, 126, 246
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	65, 379
NlaIII	CATG	2 cut(s)	370, 415
NlaIV	GGNNCC	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	26, 103, 199, 372, 379, 396, 454
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	72, 126, 246
SatI	GCNGC	7 cut(s)	25, 102, 198, 371, 378, 395, 453
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	4 cut(s)	159, 186, 199, 265
SfcI	CTRYAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	77, 142, 281, 341
SsiI	CCGC	2 cut(s)	25, 453
SspMI	CTAG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	251, 326
TaiI	ACGT	1 cut(s)	186
TasI	AATT	4 cut(s)	77, 142, 281, 341
TauI	GCSGC	2 cut(s)	27, 455
Tru1I	TTAA	3 cut(s)	72, 126, 246
Tru9I	TTAA	3 cut(s)	72, 126, 246
TseI	GCWGC	5 cut(s)	101, 197, 370, 377, 394
TspDTI	ATGAA	6 cut(s)	37, 90, 230, 355, 394, 428
XapI	RAATTY	3 cut(s)	77, 142, 341
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.