Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011782

Physical Location & Seq

Genomic Coordinates Reverse (-)

2457725 .. 2460235

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGGTTCGTCTCCTTCCTCGGTCGCGTCCTCTTCGCTTCCATCTTCATCCTCTCTGCTTGGCAAGCGTTCAATGAATTTGGTGTTGATGGTGGACCTGCTGCCAAGGACTTGGTTCCCAAATTTGATGTATTCAAGAAAAATCTGTCTTCGAAACTAAGGATTGAACTACCACATATAGATGTTAAACATTTAGCTGCTGCTACGGTAGCTCTAAAAGGGGTTGGAGGCATTTTATTCATACTTAACAGTTCTTTTGGAGCTTCTCTCCTGCTTCTACAATTGGCGTTTACCACTCCACTTATCTATGACTTCTACAACTACAGTCCTGACAACACCAAATTTGGCATACTCCTGAATGATTTCTTGCAGCACGCAGCACTTTTTGGTGCACTGCTTTTCTTTGTAGGGATGAAGAACTCAATTCCAAAGAGGCAACTCAAAAAGAAGGCCCCAAAAACCAAAACCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

158

Amino Acids

17.23

Weight (kDa)

9.9

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04340 AT5G43460 AT5G43460
fragaria_vesca	FvH4_4g03211 FvH4_5g30450
malus_domestica	MD13G1210700.v1.1 MD16G1213900.v1.1
prunus_persica	Prupe.1G035100_v2.0.a1
pyrus_communis	pycom13g18320 pycom16g17970
rosa_chinensis	RchiOBHm_Chr4g0391891
rosa_laevigata	RLG00000009851
rosa_multiflora	Rmu_co8463711.1_g000001 Rmu_sc0000383.1_g000013 Rmu_sc0007693.1_g000011
rosa_rugosa	Rorug03G0336700
rosa_samantha	Rh4AG039100 Rh4BG033800
rosa_wichuraiana	Rw4G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccII	CGCG	1 cut(s)	27
AcsI	RAATTY	3 cut(s)	77, 122, 341
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	73, 136, 167
AluBI	AGCT	3 cut(s)	197, 212, 263
AluI	AGCT	3 cut(s)	197, 212, 263
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	450
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	5 cut(s)	101, 197, 200, 370, 377
ApoI	RAATTY	3 cut(s)	77, 122, 341
AsiGI	ACCGGT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	95, 451
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	5 cut(s)	88, 184, 187, 382, 389
BccI	CCATC	2 cut(s)	50, 83
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	5 cut(s)	102, 198, 201, 371, 378
BlsI	GCNGC	5 cut(s)	103, 199, 202, 372, 379
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 451
BmiI	GGNNCC	2 cut(s)	117, 453
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu14I	TTCGAA	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	19, 105
BsaWI	WCCGGW	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	19, 105
BseGI	GGATG	2 cut(s)	48, 417
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	5 cut(s)	88, 184, 187, 382, 389
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	117, 453
BspMI	ACCTGC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	19, 105
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	208, 251, 326
Bst6I	CTCTTC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	66, 375
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	48, 417
BstFNI	CGCG	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 209
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	5 cut(s)	88, 184, 187, 382, 389
BstV2I	GAAGAC	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	48, 417
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	66, 375
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	95, 451
CseI	GACGC	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	467
CviJI	RGCY	4 cut(s)	197, 212, 263, 452
CviKI_1	RGCY	4 cut(s)	197, 212, 263, 452
DdeI	CTNAG	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	16
FaiI	YATR	5 cut(s)	177, 179, 242, 309, 350
Fnu4HI	GCNGC	5 cut(s)	102, 198, 201, 371, 378
FokI	GGATG	2 cut(s)	35, 424
Fsp4HI	GCNGC	5 cut(s)	102, 198, 201, 371, 378
GluI	GCNGC	5 cut(s)	102, 198, 201, 371, 378
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	95, 291, 392
Hpy188III	TCNNGA	3 cut(s)	136, 329, 355
Hpy8I	GTNNAC	3 cut(s)	95, 291, 392
HpyAV	CCTTC	2 cut(s)	25, 442
HpyCH4III	ACNGT	3 cut(s)	208, 251, 326
HpyCH4V	TGCA	2 cut(s)	370, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 209
HpyF3I	CTNAG	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	4 cut(s)	111, 284, 342, 368
Lsp1109I	GCAGC	5 cut(s)	88, 184, 187, 382, 389
MboII	GAAGA	4 cut(s)	25, 37, 141, 427
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	5 cut(s)	77, 122, 281, 341, 423
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	29, 41, 62, 221, 426
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	186, 246
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	468
MunI	CAATTG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	65, 209
NlaIV	GGNNCC	2 cut(s)	117, 453
NspV	TTCGAA	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	362
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	103, 199, 202, 372, 379
PspN4I	GGNNCC	2 cut(s)	117, 453
PspPI	GGNCC	2 cut(s)	95, 451
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	186, 246
SatI	GCNGC	5 cut(s)	102, 198, 201, 371, 378
Sau96I	GGNCC	2 cut(s)	95, 451
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	4 cut(s)	100, 199, 214, 265
SfcI	CTRYAG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	5 cut(s)	77, 122, 281, 341, 423
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	208, 251, 326
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	5 cut(s)	77, 122, 281, 341, 423
Tru1I	TTAA	2 cut(s)	186, 246
Tru9I	TTAA	2 cut(s)	186, 246
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	5 cut(s)	101, 197, 200, 370, 377
TspDTI	ATGAA	4 cut(s)	37, 90, 229, 428
TspRI	CASTG	1 cut(s)	399
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	77, 122, 341
XmnI	GAANNNNTTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.