MD13G1210700.v1.1

HR-like lesion-inducing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011782
Physical Location & Seq
Reverse (-)
19604503 .. 19607277
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1210700.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGGGTTCGTCTCCTTCCTCGGCCGCGTCCTCTTCGCCTCCATCTTCATCCTCTCTGCCTGGCAAGCGTTTAATGAATTTGGTGTTGATGGTGGCCCTGCTGCAAAGGACTTGTCTCCCAAGTTTAATGTGTTCAAGAAAAATTTGTCTGCTAAGCTAGGGGTTGCAATACCGGAGATAGACGTAAGACATTTAGCTGCTGGTGTGGTAGCAATGAAGGGGCTTGGAGGACTTCTATTCGTACTTAACAGTTCCTTTGGAGCTACTCTCCTGCTTCTACAATTGGCGATTACCTCTCCCCTTATCTATGATTTCTACAACTACAGTCCTGAAAACGCCAAATTTGGCATACTCCTAAATGAGTTCTTGCAGCACGCAGCGCTTTTTGGTGCGCTGCTTTTCTTCATTGGCATGAAGAACTCAATTCCAAAGAGGCAAGTCAAAAAGAAGGCCGCCCCAAAAACCAAAACGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HR_lesion

Protein Analysis

159

Amino Acids

17.08

Weight (kDa)

9.95

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HR_lesion PF05514 1 - 138 3.8e-57 HR-like lesion-inducing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011782)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04340 AT5G43460 AT5G43460
fragaria_vesca FvH4_4g03211 FvH4_5g30450
malus_domestica MD13G1210700.v1.1 MD16G1213900.v1.1
prunus_persica Prupe.1G035100_v2.0.a1
pyrus_communis pycom13g18320 pycom16g17970
rosa_chinensis RchiOBHm_Chr4g0391891
rosa_laevigata RLG00000009851
rosa_multiflora Rmu_co8463711.1_g000001 Rmu_sc0000383.1_g000013 Rmu_sc0007693.1_g000011
rosa_rugosa Rorug03G0336700
rosa_samantha Rh4AG039100 Rh4BG033800
rosa_wichuraiana Rw4G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 25, 453
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 3 cut(s) 77, 142, 341
AfaI GTAC 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 381
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 157, 197, 263
AluI AGCT 3 cut(s) 157, 197, 263
Alw26I GTCTC 2 cut(s) 16, 120
Aor51HI AGCGCT 1 cut(s) 381
AoxI GGCC 3 cut(s) 22, 94, 450
ApeKI GCWGC 5 cut(s) 101, 197, 370, 377, 394
ApoI RAATTY 3 cut(s) 77, 142, 341
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 2 cut(s) 382, 394
AspS9I GGNCC 1 cut(s) 95
BbvI GCAGC 5 cut(s) 88, 184, 381, 382, 389
BccI CCATC 2 cut(s) 50, 83
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 16, 120
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 322
BfoI RGCGCY 1 cut(s) 383
BisI GCNGC 7 cut(s) 25, 102, 198, 371, 378, 395, 453
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 7 cut(s) 26, 103, 199, 372, 379, 396, 454
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 252, 284
Bpu1102I GCTNAGC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 219
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 5 cut(s) 88, 184, 381, 382, 389
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 3 cut(s) 24, 96, 452
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 16, 120
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 3 cut(s) 24, 96, 452
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 2 cut(s) 25, 453
BspANI GGCC 3 cut(s) 24, 96, 452
BspFNI CGCG 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 251, 326
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 66, 375
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 2 cut(s) 382, 394
BstMAI GTCTC 2 cut(s) 16, 120
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 65, 379
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 5 cut(s) 88, 184, 381, 382, 389
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 24, 96, 452
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 66, 375
CfoI GCGC 2 cut(s) 382, 394
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 412
CviJI RGCY 7 cut(s) 24, 96, 157, 197, 223, 263, 452
CviKI_1 RGCY 7 cut(s) 24, 96, 157, 197, 223, 263, 452
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 381
Eco52I CGGCCG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 415
FaiI YATR 3 cut(s) 309, 350, 413
FatI CATG 1 cut(s) 411
Fnu4HI GCNGC 7 cut(s) 25, 102, 198, 371, 378, 395, 453
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 7 cut(s) 25, 102, 198, 371, 378, 395, 453
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 381, 393
GluI GCNGC 7 cut(s) 25, 102, 198, 371, 378, 395, 453
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 3 cut(s) 24, 96, 452
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 382, 394
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 2 cut(s) 380, 392
HinP1I GCGC 2 cut(s) 380, 392
HpaII CCGG 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 136, 329
HpyAV CCTTC 3 cut(s) 25, 211, 442
HpyCH4III ACNGT 2 cut(s) 251, 326
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 104, 167, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 379
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 2 cut(s) 380, 392
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 7 cut(s) 46, 73, 111, 186, 186, 284, 342
Lsp1109I GCAGC 5 cut(s) 88, 184, 381, 382, 389
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 183
MboII GAAGA 4 cut(s) 25, 37, 394, 427
MfeI CAATTG 1 cut(s) 281
MluCI AATT 5 cut(s) 77, 142, 281, 341, 423
MnlI CCTC 7 cut(s) 29, 41, 49, 62, 221, 304, 426
MseI TTAA 3 cut(s) 72, 126, 246
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 65, 379
NlaIII CATG 1 cut(s) 415
PkrI GCNGC 7 cut(s) 26, 103, 199, 372, 379, 396, 454
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspPI GGNCC 1 cut(s) 95
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 3 cut(s) 72, 126, 246
SatI GCNGC 7 cut(s) 25, 102, 198, 371, 378, 395, 453
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 61
SetI ASST 5 cut(s) 159, 186, 199, 265, 296
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 5 cut(s) 77, 142, 281, 341, 423
SsiI CCGC 2 cut(s) 25, 453
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 251, 326
TaiI ACGT 1 cut(s) 186
TasI AATT 5 cut(s) 77, 142, 281, 341, 423
TauI GCSGC 2 cut(s) 27, 455
Tru1I TTAA 3 cut(s) 72, 126, 246
Tru9I TTAA 3 cut(s) 72, 126, 246
TseI GCWGC 5 cut(s) 101, 197, 370, 377, 394
TspDTI ATGAA 5 cut(s) 37, 90, 230, 394, 428
XapI RAATTY 3 cut(s) 77, 142, 341
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.