Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011782

Physical Location & Seq

Genomic Coordinates Reverse (-)

14337048 .. 14338961

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGTTCGTCTCCTTCCTCGGCCGCGTCCTCTTCGCCTCCATCTTCATGCTCTCTGCTTGGCAAGCGTTTAATGAATTTGGTGTTGATGGTGGCCCTGCTGCAAAGGACTTGGCTCCCAAGTTTAATGTGTTCAAGAAAAATTTGTCCGCTAAGCTAGGGGTTGCAATACCGGAGATAGAGGTAAGACATTTAGCTGCTGGTGTGGTAGCAATGAAAGGGCTTGGAGGACTTCTATTCGTGCTTAACAGTTCCTTTGGAGCTTCTCTCCTGCTTCTACAATTGGCAATTACCACTCCCCTTATCTATGATTTCTACAACTACAGTCCTGAGAACGCCAAATTTGGCATACTCCTAAACGAATTCTTGCAGCACGCAGCGCTTTTTGGTGCACTGCTATTCTTCATTGGCATGAAGAACTCAATTCCAAGGAGGCAAGTCAAAAAGAAGGCTGCCCCAAAAACCAAAACGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

159

Amino Acids

17.13

Weight (kDa)

10.0

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04340 AT5G43460 AT5G43460
fragaria_vesca	FvH4_4g03211 FvH4_5g30450
malus_domestica	MD13G1210700.v1.1 MD16G1213900.v1.1
prunus_persica	Prupe.1G035100_v2.0.a1
pyrus_communis	pycom13g18320 pycom16g17970
rosa_chinensis	RchiOBHm_Chr4g0391891
rosa_laevigata	RLG00000009851
rosa_multiflora	Rmu_co8463711.1_g000001 Rmu_sc0000383.1_g000013 Rmu_sc0007693.1_g000011
rosa_rugosa	Rorug03G0336700
rosa_samantha	Rh4AG039100 Rh4BG033800
rosa_wichuraiana	Rw4G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 150
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	4 cut(s)	77, 142, 341, 362
AfeI	AGCGCT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	3 cut(s)	157, 197, 263
AluI	AGCT	3 cut(s)	157, 197, 263
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	2 cut(s)	22, 94
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	5 cut(s)	101, 197, 370, 377, 452
ApoI	RAATTY	4 cut(s)	77, 142, 341, 362
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	5 cut(s)	88, 184, 382, 389, 439
BccI	CCATC	2 cut(s)	50, 83
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	6 cut(s)	25, 102, 198, 371, 378, 453
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	26, 103, 199, 372, 379, 454
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu1102I	GCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	19, 428
BsaWI	WCCGGW	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	19, 428
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	394
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	5 cut(s)	88, 184, 382, 389, 439
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	24, 96
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	24, 96
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	25, 150
BspANI	GGCC	2 cut(s)	24, 96
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	19, 428
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	251, 326
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	66, 375
BstDEI	CTNAG	2 cut(s)	153, 330
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 379
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	5 cut(s)	88, 184, 382, 389, 439
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	24, 96
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	66, 375
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	16
CviAII	CATG	2 cut(s)	49, 412
CviJI	RGCY	8 cut(s)	24, 96, 116, 157, 197, 223, 263, 452
CviKI_1	RGCY	8 cut(s)	24, 96, 116, 157, 197, 223, 263, 452
DdeI	CTNAG	2 cut(s)	153, 330
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	428
Eco47III	AGCGCT	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	52, 415
FaiI	YATR	4 cut(s)	50, 309, 350, 413
FatI	CATG	2 cut(s)	48, 411
Fnu4HI	GCNGC	6 cut(s)	25, 102, 198, 371, 378, 453
Fsp4HI	GCNGC	6 cut(s)	25, 102, 198, 371, 378, 453
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	6 cut(s)	25, 102, 198, 371, 378, 453
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	24, 96
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	52, 415
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188III	TCNNGA	2 cut(s)	136, 329
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	2 cut(s)	25, 442
HpyCH4III	ACNGT	2 cut(s)	251, 326
HpyCH4V	TGCA	4 cut(s)	104, 167, 370, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 379
HpyF3I	CTNAG	2 cut(s)	153, 330
Hsp92II	CATG	2 cut(s)	52, 415
HspAI	GCGC	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	121, 260
LpnPI	CCDG	5 cut(s)	111, 186, 186, 284, 342
Lsp1109I	GCAGC	5 cut(s)	88, 184, 382, 389, 439
MaeI	CTAG	1 cut(s)	158
MboII	GAAGA	4 cut(s)	25, 37, 394, 427
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	7 cut(s)	77, 142, 281, 288, 341, 362, 423
MnlI	CCTC	6 cut(s)	29, 41, 49, 175, 221, 426
MseI	TTAA	3 cut(s)	72, 126, 246
MslI	CAYNNNNRTG	2 cut(s)	47, 410
MspI	CCGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	65, 379
NlaIII	CATG	2 cut(s)	52, 415
NlaIV	GGNNCC	1 cut(s)	117
PkrI	GCNGC	6 cut(s)	26, 103, 199, 372, 379, 454
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	47, 410
SaqAI	TTAA	3 cut(s)	72, 126, 246
SatI	GCNGC	6 cut(s)	25, 102, 198, 371, 378, 453
Sau96I	GGNCC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	4 cut(s)	159, 186, 199, 265
SfcI	CTRYAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	47, 410
Sse9I	AATT	7 cut(s)	77, 142, 281, 288, 341, 362, 423
SsiI	CCGC	2 cut(s)	25, 150
SspMI	CTAG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	251, 326
TasI	AATT	7 cut(s)	77, 142, 281, 288, 341, 362, 423
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	3 cut(s)	72, 126, 246
Tru9I	TTAA	3 cut(s)	72, 126, 246
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	5 cut(s)	101, 197, 370, 377, 452
TspDTI	ATGAA	5 cut(s)	37, 90, 230, 394, 428
TspRI	CASTG	1 cut(s)	399
VneI	GTGCAC	1 cut(s)	390
XapI	RAATTY	4 cut(s)	77, 142, 341, 362
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.