AT1G04400

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006855
Physical Location & Seq
Reverse (-)
1185512 .. 1188696
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04400.2

Sequence Viewer

Length: 1839 bp
ATGAAGATGGACAAAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAGCAGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGACAGTTTTATCCTGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTCAATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCACAACACGATTTCAGCGATCTTGGATTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATGATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATCTCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAGGGCAAACCTTTTACGAGTTTCAATTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAATCCGTTATGCTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGATTTGGGCGTGTTCGATTGAAGAACTAGGGCTGGAGAATGAGGCCGAGAAACCGAGCAATGCGTTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGTTACTAAATGAGTTCATCGAGAAGCAGTTGATAGATTATGCAAAGAACAGCAAGAAAGTTGTTGGGAATTCTACTTCACTACTTTCTCCGTATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTGTGCCCGGATGAAACAAATTATATGGGCAAGAGATAAGAACAGTGAAGGAGAAGAAAGTGCAGATCTTTTTCTTAGGGGAATCGGTTTAAGAGAGTATTCTCGGTATATATGTTTCAACTTCCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGATGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACCGGTTATCCGTTGGTGGATGCCGGAATGAGAGAGCTTTGGGCTACCGGATGGATGCATAACAGAATAAGAGTGATTGTTTCAAGCTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATACACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGTATCCCCGATGGCCACGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCCAAATATGACCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATGGATCCATCATCCATGGGACGCTCCTTTAACCGTACTCAAAGCTTCTGGTGTGGAACTCGGAACAAACTATGCGAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTAGCTAAAGCTATTTCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGCAGATAGCTTCGAGGCCTTAGGGGCTAATACCATTAAAGAACCTGGTCTTTGCCCATCTGTGTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAAACCTGAGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGGGGATTCGATGAAAGGGAGTTGTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTTTTTCGTTTCGCAGTCTTGCTCGTTGGCATCAGAAGGGAAGAATCTGGAAGGTATTCAAGATTCATCTGATCAGATTACTACAAGTTTGGGAAAAAATGGTTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

612

Amino Acids

69.46

Weight (kDa)

5.69

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 7 - 160 5.1e-41 DNA photolyase
FAD_binding_7 PF03441 287 - 485 1.1e-70 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1259
AccI GTMKAC 1 cut(s) 1416
AccII CGCG 2 cut(s) 273, 1250
AciI CCGC 4 cut(s) 271, 517, 539, 1248
AclWI GGATC 6 cut(s) 97, 220, 308, 377, 1327, 1340
AcoI YGGCCR 1 cut(s) 1219
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 2 cut(s) 141, 564
AcyI GRCGYC 1 cut(s) 1260
AfaI GTAC 3 cut(s) 1286, 1365, 1593
AfiI CCNNNNNNNGG 1 cut(s) 760
AflIII ACRYGT 1 cut(s) 778
AgeI ACCGGT 2 cut(s) 278, 1007
AjnI CCWGG 4 cut(s) 142, 634, 989, 1552
Alw26I GTCTC 4 cut(s) 33, 636, 988, 1647
AlwI GGATC 6 cut(s) 97, 220, 308, 377, 1327, 1340
AlwNI CAGNNNCTG 3 cut(s) 77, 542, 1496
Ama87I CYCGRG 1 cut(s) 1304
AoxI GGCC 4 cut(s) 591, 987, 1219, 1524
ApeKI GCWGC 5 cut(s) 71, 74, 77, 536, 1490
ApoI RAATTY 1 cut(s) 724
AsiGI ACCGGT 2 cut(s) 278, 1007
Asp700I GAANNNNTTC 3 cut(s) 151, 1139, 1782
AspLEI GCGC 1 cut(s) 1262
AspS9I GGNCC 2 cut(s) 334, 1005
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 1292
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 2 cut(s) 334, 1005
AxyI CCTNAGG 3 cut(s) 44, 1528, 1635
BaeGI GKGCMC 1 cut(s) 796
BalI TGGCCA 1 cut(s) 1221
BamHI GGATCC 1 cut(s) 1332
BanI GGYRCC 1 cut(s) 1259
BauI CACGAG 3 cut(s) 923, 1223, 1431
BbsI GAAGAC 2 cut(s) 97, 1566
BbvI GCAGC 5 cut(s) 64, 83, 86, 548, 1502
BccI CCATC 6 cut(s) 153, 633, 1050, 1211, 1344, 1573
BciT130I CCWGG 4 cut(s) 144, 636, 991, 1554
BciVI GTATCC 3 cut(s) 278, 1141, 1220
BclI TGATCA 1 cut(s) 1798
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 4 cut(s) 33, 636, 988, 1647
BfaI CTAG 4 cut(s) 575, 621, 1442, 1668
BfmI CTRYAG 2 cut(s) 21, 534
BfoI RGCGCY 1 cut(s) 1263
BfuI GTATCC 3 cut(s) 278, 1141, 1220
BglI GCCNNNNNGGC 1 cut(s) 1532
BglII AGATCT 2 cut(s) 394, 853
BisI GCNGC 6 cut(s) 72, 75, 78, 537, 540, 1491
BlsI GCNGC 6 cut(s) 73, 76, 79, 538, 541, 1492
Bme1390I CCNGG 5 cut(s) 144, 636, 796, 991, 1554
Bme18I GGWCC 2 cut(s) 334, 1005
BmeT110I CYCGRG 1 cut(s) 1304
BmgT120I GGNCC 2 cut(s) 334, 1005
BmiI GGNNCC 3 cut(s) 335, 1261, 1334
BmrFI CCNGG 5 cut(s) 144, 636, 796, 991, 1554
BmsI GCATC 6 cut(s) 513, 955, 1015, 1050, 1150, 1766
BpiI GAAGAC 2 cut(s) 97, 1566
BpmI CTGGAG 3 cut(s) 602, 618, 1012
BpuMI CCSGG 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 1481
BsaHI GRCGYC 1 cut(s) 1260
BsaI GGTCTC 2 cut(s) 33, 636
BsaJI CCNNGG 6 cut(s) 410, 512, 959, 1118, 1183, 1343
BsaWI WCCGGW 3 cut(s) 278, 1007, 1052
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse118I RCCGGY 2 cut(s) 278, 1007
Bse1I ACTGG 2 cut(s) 467, 787
Bse21I CCTNAGG 3 cut(s) 44, 1528, 1635
Bse3DI GCAATG 3 cut(s) 613, 652, 1301
Bse8I GATNNNNATC 1 cut(s) 1481
BseBI CCWGG 4 cut(s) 144, 636, 991, 1554
BseDI CCNNGG 6 cut(s) 410, 512, 959, 1118, 1183, 1343
BseJI GATNNNNATC 1 cut(s) 1481
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMI GCAATG 3 cut(s) 613, 652, 1301
BseMII CTCAG 1 cut(s) 1626
BseNI ACTGG 2 cut(s) 467, 787
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 5 cut(s) 64, 83, 86, 548, 1502
BsgI GTGCAG 1 cut(s) 870
Bsh1236I CGCG 2 cut(s) 273, 1250
BshFI GGCC 4 cut(s) 593, 989, 1221, 1526
BshNI GGYRCC 1 cut(s) 1259
BshTI ACCGGT 2 cut(s) 278, 1007
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 5 cut(s) 279, 796, 1008, 1029, 1053
BslFI GGGAC 2 cut(s) 347, 1361
BslI CCNNNNNNNGG 1 cut(s) 760
BsmAI GTCTC 4 cut(s) 33, 636, 988, 1647
BsmFI GGGAC 2 cut(s) 347, 1361
BsnI GGCC 4 cut(s) 593, 989, 1221, 1526
Bso31I GGTCTC 2 cut(s) 33, 636
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 1 cut(s) 796
Bsp19I CCATGG 2 cut(s) 1118, 1343
BspACI CCGC 4 cut(s) 271, 517, 539, 1248
BspANI GGCC 4 cut(s) 593, 989, 1221, 1526
BspCNI CTCAG 1 cut(s) 1627
BspFNI CGCG 2 cut(s) 273, 1250
BspHI TCATGA 1 cut(s) 1479
BspLI GGNNCC 3 cut(s) 335, 1261, 1334
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 6 cut(s) 97, 220, 308, 377, 1327, 1340
BspQI GCTCTTC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 1259
BspTNI GGTCTC 2 cut(s) 33, 636
BsrDI GCAATG 3 cut(s) 613, 652, 1301
BsrFI RCCGGY 2 cut(s) 278, 1007
BsrI ACTGG 2 cut(s) 467, 787
BssAI RCCGGY 2 cut(s) 278, 1007
BssECI CCNNGG 6 cut(s) 410, 512, 959, 1118, 1183, 1343
BssNI GRCGYC 1 cut(s) 1260
BssSI CACGAG 3 cut(s) 923, 1223, 1431
BssT1I CCWWGG 5 cut(s) 512, 959, 1118, 1183, 1343
Bst2BI CACGAG 3 cut(s) 923, 1223, 1431
Bst2UI CCWGG 4 cut(s) 144, 636, 991, 1554
Bst4CI ACNGT 5 cut(s) 135, 343, 411, 833, 1363
Bst6I CTCTTC 3 cut(s) 31, 142, 1641
BstACI GRCGYC 1 cut(s) 1260
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 1190, 1311
BstDEI CTNAG 5 cut(s) 44, 475, 863, 1528, 1635
BstDSI CCRYGG 3 cut(s) 410, 1118, 1343
BstFNI CGCG 2 cut(s) 273, 1250
BstH2I RGCGCY 1 cut(s) 1263
BstHHI GCGC 1 cut(s) 1262
BstMAI GTCTC 4 cut(s) 33, 636, 988, 1647
BstMWI GCNNNNNNNGC 8 cut(s) 71, 77, 432, 523, 545, 554, 1306, 1532
BstNI CCWGG 4 cut(s) 144, 636, 991, 1554
BstSCI CCNGG 5 cut(s) 142, 634, 794, 989, 1552
BstSFI CTRYAG 2 cut(s) 21, 534
BstSLI GKGCMC 1 cut(s) 796
BstUI CGCG 2 cut(s) 273, 1250
BstV1I GCAGC 5 cut(s) 64, 83, 86, 548, 1502
BstV2I GAAGAC 2 cut(s) 97, 1566
BstX2I RGATCY 6 cut(s) 89, 212, 369, 394, 853, 1332
BstXI CCANNNNNNTGG 2 cut(s) 1125, 1329
BstYI RGATCY 6 cut(s) 89, 212, 369, 394, 853, 1332
Bsu36I CCTNAGG 3 cut(s) 44, 1528, 1635
BsuI GTATCC 3 cut(s) 278, 1141, 1220
BsuRI GGCC 4 cut(s) 593, 989, 1221, 1526
BtgI CCRYGG 3 cut(s) 410, 1118, 1343
BtsIMutI CAGTG 2 cut(s) 794, 838
Cac8I GCNNGC 2 cut(s) 1190, 1311
CaiI CAGNNNCTG 3 cut(s) 77, 542, 1496
CciI TCATGA 1 cut(s) 1479
CfoI GCGC 1 cut(s) 1262
Cfr10I RCCGGY 2 cut(s) 278, 1007
Cfr13I GGNCC 2 cut(s) 334, 1005
CseI GACGC 2 cut(s) 760, 1358
CsiI ACCWGGT 1 cut(s) 1552
Csp6I GTAC 3 cut(s) 1285, 1364, 1592
CspAI ACCGGT 2 cut(s) 278, 1007
CviAII CATG 4 cut(s) 1119, 1344, 1480, 1657
CviQI GTAC 3 cut(s) 1285, 1364, 1592
DdeI CTNAG 5 cut(s) 44, 475, 863, 1528, 1635
DinI GGCGCC 1 cut(s) 1261
EaeI YGGCCR 1 cut(s) 1219
Eam1104I CTCTTC 3 cut(s) 31, 142, 1641
EarI CTCTTC 3 cut(s) 31, 142, 1641
Eco130I CCWWGG 5 cut(s) 512, 959, 1118, 1183, 1343
Eco147I AGGCCT 2 cut(s) 989, 1526
Eco31I GGTCTC 2 cut(s) 33, 636
Eco47I GGWCC 2 cut(s) 334, 1005
Eco57I CTGAAG 2 cut(s) 141, 564
Eco81I CCTNAGG 3 cut(s) 44, 1528, 1635
Eco88I CYCGRG 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 4 cut(s) 142, 634, 989, 1552
EcoT14I CCWWGG 5 cut(s) 512, 959, 1118, 1183, 1343
EcoT22I ATGCAT 1 cut(s) 1065
EgeI GGCGCC 1 cut(s) 1261
EheI GGCGCC 1 cut(s) 1261
ErhI CCWWGG 5 cut(s) 512, 959, 1118, 1183, 1343
FaeI CATG 4 cut(s) 1122, 1347, 1483, 1660
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 2 cut(s) 347, 1361
FatI CATG 4 cut(s) 1118, 1343, 1479, 1656
FauI CCCGC 1 cut(s) 1255
FbaI TGATCA 1 cut(s) 1798
FblI GTMKAC 1 cut(s) 1416
Fnu4HI GCNGC 6 cut(s) 72, 75, 78, 537, 540, 1491
Fsp4HI GCNGC 6 cut(s) 72, 75, 78, 537, 540, 1491
FspBI CTAG 4 cut(s) 575, 621, 1442, 1668
GlaI GCGC 1 cut(s) 1261
GluI GCNGC 6 cut(s) 72, 75, 78, 537, 540, 1491
GsuI CTGGAG 3 cut(s) 602, 618, 1012
HaeII RGCGCY 1 cut(s) 1263
HaeIII GGCC 4 cut(s) 593, 989, 1221, 1526
HapII CCGG 5 cut(s) 279, 796, 1008, 1029, 1053
HgaI GACGC 2 cut(s) 760, 1358
HhaI GCGC 1 cut(s) 1262
Hin1I GRCGYC 1 cut(s) 1260
Hin1II CATG 4 cut(s) 1122, 1347, 1483, 1660
Hin6I GCGC 1 cut(s) 1260
HinP1I GCGC 1 cut(s) 1260
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 1090, 1371
HinfI GANTC 7 cut(s) 491, 870, 940, 1674, 1706, 1771, 1790
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 5 cut(s) 279, 796, 1008, 1029, 1053
HphI GGTGA 1 cut(s) 1292
Hpy166II GTNNAC 3 cut(s) 618, 918, 1417
Hpy188I TCNGA 7 cut(s) 217, 776, 1391, 1487, 1762, 1798, 1803
Hpy8I GTNNAC 3 cut(s) 618, 918, 1417
HpyAV CCTTC 9 cut(s) 80, 122, 196, 830, 1124, 1271, 1605, 1757, 1772
HpyCH4III ACNGT 5 cut(s) 135, 343, 411, 833, 1363
HpyCH4IV ACGT 2 cut(s) 364, 780
HpyCH4V TGCA 7 cut(s) 65, 379, 536, 698, 851, 1063, 1833
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 77, 432, 523, 545, 554, 1306, 1532
HpyF3I CTNAG 5 cut(s) 44, 475, 863, 1528, 1635
HpySE526I ACGT 2 cut(s) 364, 780
Hsp92I GRCGYC 1 cut(s) 1260
Hsp92II CATG 4 cut(s) 1122, 1347, 1483, 1660
HspAI GCGC 1 cut(s) 1260
KasI GGCGCC 1 cut(s) 1259
Ksp22I TGATCA 1 cut(s) 1798
KspAI GTTAAC 1 cut(s) 618
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 3 cut(s) 642, 1357, 1487
Lsp1109I GCAGC 5 cut(s) 64, 83, 86, 548, 1502
LweI GCATC 6 cut(s) 513, 955, 1015, 1050, 1150, 1766
MabI ACCWGGT 1 cut(s) 1552
MaeI CTAG 4 cut(s) 575, 621, 1442, 1668
MaeII ACGT 2 cut(s) 364, 780
MaeIII GTNAC 5 cut(s) 274, 657, 1175, 1251, 1607
MflI RGATCY 6 cut(s) 89, 212, 369, 394, 853, 1332
MhlI GDGCHC 1 cut(s) 796
MlsI TGGCCA 1 cut(s) 1221
MluCI AATT 3 cut(s) 454, 724, 807
MluNI TGGCCA 1 cut(s) 1221
Mly113I GGCGCC 1 cut(s) 1260
MlyI GAGTC 1 cut(s) 949
MnlI CCTC 8 cut(s) 46, 230, 317, 516, 519, 583, 1516, 1630
Mox20I TGGCCA 1 cut(s) 1221
Mph1103I ATGCAT 1 cut(s) 1065
MroXI GAANNNNTTC 3 cut(s) 151, 1139, 1782
MscI TGGCCA 1 cut(s) 1221
MseI TTAA 6 cut(s) 227, 300, 617, 878, 1358, 1545
MslI CAYNNNNRTG 2 cut(s) 309, 1123
Msp20I TGGCCA 1 cut(s) 1221
MspA1I CMGCKG 2 cut(s) 77, 539
MspI CCGG 5 cut(s) 279, 796, 1008, 1029, 1053
MspR9I CCNGG 5 cut(s) 144, 636, 796, 991, 1554
MvaI CCWGG 4 cut(s) 144, 636, 991, 1554
MvnI CGCG 2 cut(s) 273, 1250
MwoI GCNNNNNNNGC 8 cut(s) 71, 77, 432, 523, 545, 554, 1306, 1532
NarI GGCGCC 1 cut(s) 1260
NciI CCSGG 1 cut(s) 796
NcoI CCATGG 2 cut(s) 1118, 1343
NlaIII CATG 4 cut(s) 1122, 1347, 1483, 1660
NlaIV GGNNCC 3 cut(s) 335, 1261, 1334
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 1175
NsiI ATGCAT 1 cut(s) 1065
PagI TCATGA 1 cut(s) 1479
PceI AGGCCT 2 cut(s) 989, 1526
PciSI GCTCTTC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PdmI GAANNNNTTC 3 cut(s) 151, 1139, 1782
PfeI GAWTC 6 cut(s) 491, 870, 1674, 1706, 1771, 1790
PfoI TCCNGGA 2 cut(s) 142, 634
PinAI ACCGGT 2 cut(s) 278, 1007
PkrI GCNGC 6 cut(s) 73, 76, 79, 538, 541, 1492
PleI GAGTC 1 cut(s) 948
PluTI GGCGCC 1 cut(s) 1263
PpsI GAGTC 1 cut(s) 948
Psp6I CCWGG 4 cut(s) 142, 634, 989, 1552
PspGI CCWGG 4 cut(s) 142, 634, 989, 1552
PspN4I GGNNCC 3 cut(s) 335, 1261, 1334
PspPI GGNCC 2 cut(s) 334, 1005
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 3 cut(s) 77, 542, 1496
PsuI RGATCY 6 cut(s) 89, 212, 369, 394, 853, 1332
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 3 cut(s) 1286, 1365, 1593
RsaNI GTAC 3 cut(s) 1285, 1364, 1592
RseI CAYNNNNRTG 2 cut(s) 309, 1123
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 6 cut(s) 227, 300, 617, 878, 1358, 1545
SatI GCNGC 6 cut(s) 72, 75, 78, 537, 540, 1491
Sau96I GGNCC 2 cut(s) 334, 1005
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 5 cut(s) 144, 636, 796, 991, 1554
SduI GDGCHC 1 cut(s) 796
SexAI ACCWGGT 1 cut(s) 1552
SfaNI GCATC 6 cut(s) 513, 955, 1015, 1050, 1150, 1766
SfcI CTRYAG 2 cut(s) 21, 534
SfoI GGCGCC 1 cut(s) 1261
SinI GGWCC 2 cut(s) 334, 1005
SmiMI CAYNNNNRTG 2 cut(s) 309, 1123
Sse9I AATT 3 cut(s) 454, 724, 807
SseBI AGGCCT 2 cut(s) 989, 1526
SsiI CCGC 4 cut(s) 271, 517, 539, 1248
SspDI GGCGCC 1 cut(s) 1259
SspMI CTAG 4 cut(s) 575, 621, 1442, 1668
StuI AGGCCT 2 cut(s) 989, 1526
StyD4I CCNGG 5 cut(s) 142, 634, 794, 989, 1552
StyI CCWWGG 5 cut(s) 512, 959, 1118, 1183, 1343
TaaI ACNGT 5 cut(s) 135, 343, 411, 833, 1363
TaiI ACGT 2 cut(s) 367, 783
TaqI TCGA 8 cut(s) 485, 563, 675, 1422, 1521, 1677, 1697, 1721
TasI AATT 3 cut(s) 454, 724, 807
TatI WGTACW 1 cut(s) 1284
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 6 cut(s) 491, 870, 1674, 1706, 1771, 1790
Tru1I TTAA 6 cut(s) 227, 300, 617, 878, 1358, 1545
Tru9I TTAA 6 cut(s) 227, 300, 617, 878, 1358, 1545
TscAI CASTG 2 cut(s) 794, 838
TseFI GTSAC 1 cut(s) 1175
TseI GCWGC 5 cut(s) 71, 74, 77, 536, 1490
Tsp45I GTSAC 1 cut(s) 1175
TspGWI ACGGA 3 cut(s) 484, 735, 1005
TspRI CASTG 2 cut(s) 794, 838
VpaK11BI GGWCC 2 cut(s) 334, 1005
XapI RAATTY 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 1416
XmnI GAANNNNTTC 3 cut(s) 151, 1139, 1782
XspI CTAG 4 cut(s) 575, 621, 1442, 1668
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.