Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004122

Physical Location & Seq

Genomic Coordinates Reverse (-)

40828834 .. 40832422

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTAGTGCCATCTATTATCATCGCCCATGAGTTTTATGATGCTTTACCAGTTCATCAATTTCAGAGGGCTTCTCGTGGCTGGTGTGAGAAAATGGTGGATGTTGCAGAAGATTCAAAGTTCCGTTTTGTTCTTTCTTCACAGCCTACACCAGCAACGCTTTATCTGGCAAAACGCTGCAAATGGGCTGGAATGGAAGAAATAGCGAAGCTTGATCATGTTGAGGTTTGCCCTGCATCAATGGAGTTGACTCAAAGTATTGCTGATAGAATTGCTTCTGATGGGGGTTGTTCTCTTGTAATTGATTATGGTCATAATGGAGTAGTCTCTGACAGTCTGCAGGTCTGTTACCTTACCATTGCTAGTTCTGCTAGTCTGAGTAGTTCTGCAGTCTACAGATATTTTCCTACTCGAGCTAGATATGGTTTGGGAACATCTAGTGAAATGTTGCCTAAAGAGTCACTAAGTGATCAAGCATGGAATACCAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009636 GO:0009931 GO:0009987 GO:0010033 GO:0010243 GO:0010857 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0046777 GO:0046898 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060992 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

164

Amino Acids

18.13

Weight (kDa)

5.77

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_28	PF02636	4 - 117	3e-22	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08650 AT1G08650 AT3G04530
fragaria_vesca	FvH4_4g03560 FvH4_6g02090 FvH4_6g08930
malus_domestica	MD04G1229200.v1.1 MD16G1217500.v1.1
prunus_persica	Prupe.1G038800_v2.0.a1 Prupe.6G349100_v2.0.a1
pyrus_communis	pycom12g22590
rosa_chinensis	RchiOBHm_Chr3g0449921 RchiOBHm_Chr4g0392911
rosa_laevigata	RLG00000009782 RLG00000025775
rosa_multiflora	Rmu_co8401231.1_g000001 Rmu_sc0002646.1_g000001 Rmu_sc0005524.1_g000005 Rmu_sc0008339.1_g000031
rosa_roxburghii	Rroxscaffold_5G00338030 Rroxscaffold_6G00427720
rosa_rugosa	Rorug02G0624000 Rorug03G0341100
rosa_samantha	Rh3AG023100 Rh3BG023700 Rh3CG022800 Rh3DG023600 Rh4AG044800 Rh4BG040600 Rh4CG048200 Rh4DG042400
rosa_wichuraiana	Rw3G001850 Rw4G003510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	2 cut(s)	211, 416
AluI	AGCT	2 cut(s)	211, 416
Alw26I	GTCTC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	411
BauI	CACGAG	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	19, 275
BclI	TGATCA	2 cut(s)	214, 469
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	5 cut(s)	5, 363, 372, 417, 438
BfmI	CTRYAG	3 cut(s)	338, 387, 394
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	31, 245
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	214, 469
BspCNI	CTCAG	1 cut(s)	369
BspMAI	CTGCAG	2 cut(s)	342, 391
BspMI	ACCTGC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	214, 469
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	377, 464
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	217, 472
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	214, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSFI	CTRYAG	3 cut(s)	338, 387, 394
BstV1I	GCAGC	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	331
CviAII	CATG	3 cut(s)	29, 218, 477
CviJI	RGCY	6 cut(s)	71, 81, 145, 188, 211, 416
CviKI_1	RGCY	6 cut(s)	71, 81, 145, 188, 211, 416
DdeI	CTNAG	2 cut(s)	377, 464
DpnI	GATC	2 cut(s)	216, 471
DpnII	GATC	2 cut(s)	214, 469
DraIII	CACNNNGTG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	411
FaeI	CATG	3 cut(s)	32, 221, 480
FaiI	YATR	7 cut(s)	30, 39, 219, 309, 315, 423, 478
FatI	CATG	3 cut(s)	28, 217, 476
FbaI	TGATCA	2 cut(s)	214, 469
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	5 cut(s)	5, 363, 372, 417, 438
GluI	GCNGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	32, 221, 480
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	113, 250, 458
Hpy166II	GTNNAC	2 cut(s)	249, 394
Hpy188I	TCNGA	4 cut(s)	66, 280, 331, 378
Hpy8I	GTNNAC	2 cut(s)	249, 394
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	107, 180, 236, 340, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	377, 464
Hsp92II	CATG	3 cut(s)	32, 221, 480
Ksp22I	TGATCA	2 cut(s)	214, 469
Kzo9I	GATC	2 cut(s)	214, 469
LpnPI	CCDG	7 cut(s)	63, 67, 152, 165, 174, 246, 326
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	31, 245
MaeI	CTAG	5 cut(s)	5, 363, 372, 417, 438
MaeIII	GTNAC	2 cut(s)	347, 459
MalI	GATC	2 cut(s)	216, 471
MboI	GATC	2 cut(s)	214, 469
MboII	GAAGA	3 cut(s)	122, 129, 209
MluCI	AATT	3 cut(s)	59, 270, 300
MlyI	GAGTC	2 cut(s)	244, 467
MnlI	CCTC	2 cut(s)	60, 217
MroXI	GAANNNNTTC	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	2 cut(s)	214, 469
NlaIII	CATG	3 cut(s)	32, 221, 480
NmuCI	GTSAC	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	244, 466
PpsI	GAGTC	2 cut(s)	244, 466
PspXI	VCTCGAGB	1 cut(s)	411
PstI	CTGCAG	2 cut(s)	342, 391
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	214, 469
SchI	GAGTC	2 cut(s)	244, 467
SetI	ASST	5 cut(s)	213, 228, 345, 354, 418
SfaNI	GCATC	2 cut(s)	31, 245
SfcI	CTRYAG	3 cut(s)	338, 387, 394
Sfr274I	CTCGAG	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	3 cut(s)	59, 270, 300
SspMI	CTAG	5 cut(s)	5, 363, 372, 417, 438
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	412
TasI	AATT	3 cut(s)	59, 270, 300
TfiI	GAWTC	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	5 cut(s)	5, 363, 372, 417, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.