RchiOBHm_Chr3g0449921
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
1585244 .. 1587082
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41727

Sequence Viewer

Length: 825 bp
ATGTACGACACGCTCAAAGACACCTACCAACTCTTCGAAGAAATCGGCCGCGGCCGATTCGGCACCATCCTCCGCGCCTTCTGCCCCGTCTCCGCCGAGTCCGTCGCCGTCAAGATCATCGACAAGTCCCTCCTCACCGACGAAACCGACCGTGCATGTCTTGAAAAAGAACCCAAGATCATGACCCTCTTATCTCCCCACCCCAACATTCTCAAAATCCACAACGTTTTCGAAACAGAGGACTCCATGGCCATGGTGCTCGAGCTCTGCGAGCCCGAAACGCTCTACGACAAGATCGCTCACCGGCCGTTGCCGGAGCCGGAAGCCGCCGGTCTTATGAAACAGCTCCTGGGAGCTATAGCCCACTGCCACAGAATGGGTGTGGTGCACAGGGATCTGAAGCCGGAGAATGTTCTTTTTGATTCAAGAAACAATCTGAAGCTGGCGGATTTTGGGTCGGCGGAGTGGTCCGGTGAGGGAGGTTCCATGGAAGGTGTGGTGGGGACGCCGTACTATGTGGCGCCGGAGGTGTTGATGGGGAGGTTGTACAATGAGAAGGTGGATGTGTGGAGTGCAGGGGTGATGTTGTATATAATGTTGGGTGGGATTCCTCCATTTTACGGCGAAACGGCGACGGAGATCTTTGAGGCGGTTTTGAGAGGGAATCTGAGGTTTCCGCCGAAGGTTTTCCGGGGAGTTTCGCCGGCGGCGAAGGATCTGTTGAGGAAGATGATGTGTAGAGATGTTTCCAGGAGACTATCTGCAGAACAAGCACTTAGACACCCATGGATCTTGAGTGGTGGAGAAGCAAATCCAATGGACTGA

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

5.59

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 264 7.5e-71 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 257 5.9e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 520
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 2 cut(s) 51, 75
AclI AACGTT 1 cut(s) 225
AclWI GGATC 3 cut(s) 402, 723, 797
AcoI YGGCCR 4 cut(s) 46, 52, 249, 305
AcuI CTGAAG 2 cut(s) 419, 458
AcyI GRCGYC 2 cut(s) 506, 521
AfaI GTAC 3 cut(s) 5, 512, 548
AfiI CCNNNNNNNGG 2 cut(s) 376, 620
AgsI TTSAA 2 cut(s) 164, 426
AjnI CCWGG 2 cut(s) 348, 749
AluBI AGCT 4 cut(s) 265, 346, 356, 442
AluI AGCT 4 cut(s) 265, 346, 356, 442
Alw21I GWGCWC 3 cut(s) 261, 267, 390
Alw26I GTCTC 2 cut(s) 94, 748
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 3 cut(s) 402, 723, 797
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 46, 52, 249, 305
ApaLI GTGCAC 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 2 cut(s) 77, 523
AspS9I GGNCC 1 cut(s) 468
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 4 cut(s) 127, 293, 485, 592
AsuII TTCGAA 2 cut(s) 36, 231
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 2 cut(s) 62, 520
BanII GRGCYC 2 cut(s) 267, 276
Bbv12I GWGCWC 3 cut(s) 261, 267, 390
BccI CCATC 2 cut(s) 74, 529
BceAI ACGGC 5 cut(s) 92, 292, 493, 637, 645
BciT130I CCWGG 2 cut(s) 350, 751
BcnI CCSGG 1 cut(s) 692
BcoDI GTCTC 2 cut(s) 94, 748
BfmI CTRYAG 2 cut(s) 357, 762
BfoI RGCGCY 1 cut(s) 524
BglI GCCNNNNNGGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 639
BisI GCNGC 4 cut(s) 49, 52, 327, 708
BlsI GCNGC 4 cut(s) 50, 53, 328, 709
Bme1390I CCNGG 3 cut(s) 350, 692, 751
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 4 cut(s) 64, 318, 484, 522
BmrFI CCNGG 3 cut(s) 350, 692, 751
Bpu14I TTCGAA 2 cut(s) 36, 231
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 692
BsaHI GRCGYC 2 cut(s) 506, 521
BsaJI CCNNGG 7 cut(s) 49, 246, 252, 349, 486, 691, 785
BsaWI WCCGGW 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 620
Bse118I RCCGGY 3 cut(s) 303, 329, 703
BseBI CCWGG 2 cut(s) 350, 751
BseDI CCNNGG 7 cut(s) 49, 246, 252, 349, 486, 691, 785
BseGI GGATG 2 cut(s) 66, 568
BseLI CCNNNNNNNGG 2 cut(s) 376, 620
BseMII CTCAG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 390
BseX3I CGGCCG 3 cut(s) 46, 52, 305
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 51, 75
Bsh1285I CGRYCG 4 cut(s) 49, 55, 151, 308
BshFI GGCC 4 cut(s) 48, 54, 251, 307
BshNI GGYRCC 2 cut(s) 62, 520
BsiEI CGRYCG 4 cut(s) 49, 55, 151, 308
BsiHKAI GWGCWC 3 cut(s) 261, 267, 390
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 9 cut(s) 304, 314, 320, 330, 404, 471, 524, 691, 704
BslFI GGGAC 2 cut(s) 112, 517
BslI CCNNNNNNNGG 2 cut(s) 376, 620
BsmAI GTCTC 2 cut(s) 94, 748
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 112, 517
BsnI GGCC 4 cut(s) 48, 54, 251, 307
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 2 cut(s) 36, 231
Bsp1286I GDGCHC 4 cut(s) 261, 267, 276, 390
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
Bsp19I CCATGG 4 cut(s) 246, 252, 486, 785
BspANI GGCC 4 cut(s) 48, 54, 251, 307
BspCNI CTCAG 1 cut(s) 660
BspFNI CGCG 2 cut(s) 51, 75
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 4 cut(s) 64, 318, 484, 522
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 3 cut(s) 402, 723, 797
BspT104I TTCGAA 2 cut(s) 36, 231
BspT107I GGYRCC 2 cut(s) 62, 520
BsrFI RCCGGY 3 cut(s) 303, 329, 703
BsrGI TGTACA 1 cut(s) 546
BssAI RCCGGY 3 cut(s) 303, 329, 703
BssECI CCNNGG 7 cut(s) 49, 246, 252, 349, 486, 691, 785
BssMI GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
BssNI GRCGYC 2 cut(s) 506, 521
BssT1I CCWWGG 4 cut(s) 246, 252, 486, 785
Bst2UI CCWGG 2 cut(s) 350, 751
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 506, 521
BstAUI TGTACA 1 cut(s) 546
BstBI TTCGAA 2 cut(s) 36, 231
BstC8I GCNNGC 3 cut(s) 272, 444, 705
BstDEI CTNAG 2 cut(s) 668, 776
BstDSI CCRYGG 5 cut(s) 49, 246, 252, 486, 785
BstF5I GGATG 2 cut(s) 66, 568
BstFNI CGCG 2 cut(s) 51, 75
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 2 cut(s) 77, 523
BstKTI GATC 7 cut(s) 117, 180, 297, 397, 642, 718, 792
BstMAI GTCTC 2 cut(s) 94, 748
BstMBI GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
BstMCI CGRYCG 4 cut(s) 49, 55, 151, 308
BstMWI GCNNNNNNNGC 5 cut(s) 60, 81, 271, 280, 770
BstNI CCWGG 2 cut(s) 350, 751
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 348, 690, 749
BstSFI CTRYAG 2 cut(s) 357, 762
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 2 cut(s) 51, 75
BstX2I RGATCY 4 cut(s) 394, 639, 715, 789
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 4 cut(s) 394, 639, 715, 789
BstZI CGGCCG 3 cut(s) 46, 52, 305
BsuRI GGCC 4 cut(s) 48, 54, 251, 307
BtgI CCRYGG 5 cut(s) 49, 246, 252, 486, 785
BtsCI GGATG 2 cut(s) 66, 568
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 272, 444, 705
CaiI CAGNNNCTG 1 cut(s) 349
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 77, 523
Cfr10I RCCGGY 3 cut(s) 303, 329, 703
Cfr13I GGNCC 1 cut(s) 468
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 1 cut(s) 514
Csp6I GTAC 3 cut(s) 4, 511, 547
CviAII CATG 6 cut(s) 156, 181, 247, 253, 487, 786
CviQI GTAC 3 cut(s) 4, 511, 547
DdeI CTNAG 2 cut(s) 668, 776
DinI GGCGCC 1 cut(s) 522
DpnI GATC 7 cut(s) 116, 179, 296, 396, 641, 717, 791
DpnII GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
EaeI YGGCCR 4 cut(s) 46, 52, 249, 305
EagI CGGCCG 3 cut(s) 46, 52, 305
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 4 cut(s) 82, 461, 476, 666
Ecl136II GAGCTC 1 cut(s) 265
EclXI CGGCCG 3 cut(s) 46, 52, 305
Eco130I CCWWGG 4 cut(s) 246, 252, 486, 785
Eco24I GRGCYC 2 cut(s) 267, 276
Eco47I GGWCC 1 cut(s) 468
Eco52I CGGCCG 3 cut(s) 46, 52, 305
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 419, 458
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 348, 749
EcoT14I CCWWGG 4 cut(s) 246, 252, 486, 785
EcoT38I GRGCYC 2 cut(s) 267, 276
EgeI GGCGCC 1 cut(s) 522
EheI GGCGCC 1 cut(s) 522
ErhI CCWWGG 4 cut(s) 246, 252, 486, 785
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 6 cut(s) 159, 184, 250, 256, 490, 789
FaqI GGGAC 2 cut(s) 112, 517
FatI CATG 6 cut(s) 155, 180, 246, 252, 486, 785
Fnu4HI GCNGC 4 cut(s) 49, 52, 327, 708
FokI GGATG 2 cut(s) 53, 575
FriOI GRGCYC 2 cut(s) 267, 276
Fsp4HI GCNGC 4 cut(s) 49, 52, 327, 708
GlaI GCGC 2 cut(s) 76, 522
GluI GCNGC 4 cut(s) 49, 52, 327, 708
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 4 cut(s) 48, 54, 251, 307
HapII CCGG 9 cut(s) 304, 314, 320, 330, 404, 471, 524, 691, 704
HgaI GACGC 1 cut(s) 514
HhaI GCGC 2 cut(s) 77, 523
Hin1I GRCGYC 2 cut(s) 506, 521
Hin1II CATG 6 cut(s) 159, 184, 250, 256, 490, 789
Hin6I GCGC 2 cut(s) 75, 521
HinP1I GCGC 2 cut(s) 75, 521
HinfI GANTC 6 cut(s) 57, 98, 242, 422, 607, 664
HpaII CCGG 9 cut(s) 304, 314, 320, 330, 404, 471, 524, 691, 704
HphI GGTGA 4 cut(s) 127, 293, 485, 592
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 399, 438, 669
Hpy188III TCNNGA 5 cut(s) 112, 161, 181, 426, 793
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 107, 143, 637
HpyAV CCTTC 5 cut(s) 88, 485, 550, 676, 706
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 155, 388, 575, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 81, 271, 280, 770
HpyF3I CTNAG 2 cut(s) 668, 776
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 2 cut(s) 506, 521
Hsp92II CATG 6 cut(s) 159, 184, 250, 256, 490, 789
HspAI GCGC 2 cut(s) 75, 521
KasI GGCGCC 1 cut(s) 520
KroI GCCGGC 1 cut(s) 703
KroNI GCCGGC 1 cut(s) 705
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
LmnI GCTCC 3 cut(s) 316, 351, 353
MaeII ACGT 1 cut(s) 225
MalI GATC 7 cut(s) 116, 179, 296, 396, 641, 717, 791
MboI GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
MboII GAAGA 3 cut(s) 25, 50, 739
MflI RGATCY 4 cut(s) 394, 639, 715, 789
MhlI GDGCHC 4 cut(s) 261, 267, 276, 390
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 521
MlyI GAGTC 2 cut(s) 107, 236
Mox20I TGGCCA 1 cut(s) 251
MreI CGCCGGCG 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 9 cut(s) 304, 314, 320, 330, 404, 471, 524, 691, 704
MspR9I CCNGG 3 cut(s) 350, 692, 751
MvaI CCWGG 2 cut(s) 350, 751
MvnI CGCG 2 cut(s) 51, 75
MwoI GCNNNNNNNGC 5 cut(s) 60, 81, 271, 280, 770
NaeI GCCGGC 1 cut(s) 705
NarI GGCGCC 1 cut(s) 521
NciI CCSGG 1 cut(s) 692
NcoI CCATGG 4 cut(s) 246, 252, 486, 785
NdeII GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
NgoMIV GCCGGC 1 cut(s) 703
NlaIII CATG 6 cut(s) 159, 184, 250, 256, 490, 789
NlaIV GGNNCC 4 cut(s) 64, 318, 484, 522
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 2 cut(s) 36, 231
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 707
PdiI GCCGGC 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 4 cut(s) 57, 422, 607, 664
PflMI CCANNNNNTGG 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 749
PkrI GCNGC 4 cut(s) 50, 53, 328, 709
PleI GAGTC 2 cut(s) 106, 236
PluTI GGCGCC 1 cut(s) 524
PpsI GAGTC 2 cut(s) 106, 236
Psp124BI GAGCTC 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 348, 749
PspGI CCWGG 2 cut(s) 348, 749
PspN4I GGNNCC 4 cut(s) 64, 318, 484, 522
PspPI GGNCC 1 cut(s) 468
PspXI VCTCGAGB 1 cut(s) 260
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 4 cut(s) 394, 639, 715, 789
RsaI GTAC 3 cut(s) 5, 512, 548
RsaNI GTAC 3 cut(s) 4, 511, 547
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 52
SatI GCNGC 4 cut(s) 49, 52, 327, 708
Sau3AI GATC 7 cut(s) 114, 177, 294, 394, 639, 715, 789
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 2 cut(s) 107, 236
ScrFI CCNGG 3 cut(s) 350, 692, 751
SduI GDGCHC 4 cut(s) 261, 267, 276, 390
SfcI CTRYAG 2 cut(s) 357, 762
SfoI GGCGCC 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 260
Sfr303I CCGCGG 1 cut(s) 52
SfuI TTCGAA 2 cut(s) 36, 231
SgrAI CRCCGGYG 1 cut(s) 703
SgrBI CCGCGG 1 cut(s) 52
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 260, 793
SmoI CTYRAG 2 cut(s) 260, 793
SspDI GGCGCC 1 cut(s) 520
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 348, 690, 749
StyI CCWWGG 4 cut(s) 246, 252, 486, 785
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 36, 120, 231, 261
TatI WGTACW 1 cut(s) 546
TauI GCSGC 4 cut(s) 51, 54, 329, 710
TfiI GAWTC 4 cut(s) 57, 422, 607, 664
TscAI CASTG 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 2 cut(s) 91, 650
TspRI CASTG 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 376
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 468
XceI RCATGY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.