Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002646.1

Orthogroup ID

OG0004122

Physical Location & Seq

Genomic Coordinates Forward (+)

1903 .. 2519

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggtgtggtgcacagggatctgaagccggagaatgttctttttgattcaagaaacaatctgaagctggcggattttgggtcggcggagtggtcctgtgagggaggctccatggaaggtgtggtggggacgccgtactatgtggcgccggaggtgttgatggggaggttgtacaatgagaaggtggatgtgtggagtgcaggggtgatgttgtatataatgttgggtgggattcctccattttacggcgaaacggcgacggagatctttgaggcggttttgagagggaatctgaggtttccgccgaaggttttccggggagtttcgccggcggcgaaggatctgttgaggaagatgatgtgtagagatgtttccaggagactatctgcagaacaagcacttagacacccatggatcttgagtggtggagaagcaaatccaatggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009636 GO:0009931 GO:0009987 GO:0010033 GO:0010243 GO:0010857 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0046777 GO:0046898 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060992 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

149

Amino Acids

16.56

Weight (kDa)

6.14

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08650 AT1G08650 AT3G04530
fragaria_vesca	FvH4_4g03560 FvH4_6g02090 FvH4_6g08930
malus_domestica	MD04G1229200.v1.1 MD16G1217500.v1.1
prunus_persica	Prupe.1G038800_v2.0.a1 Prupe.6G349100_v2.0.a1
pyrus_communis	pycom12g22590
rosa_chinensis	RchiOBHm_Chr3g0449921 RchiOBHm_Chr4g0392911
rosa_laevigata	RLG00000009782 RLG00000025775
rosa_multiflora	Rmu_co8401231.1_g000001 Rmu_sc0002646.1_g000001 Rmu_sc0005524.1_g000005 Rmu_sc0008339.1_g000031
rosa_roxburghii	Rroxscaffold_5G00338030 Rroxscaffold_6G00427720
rosa_rugosa	Rorug02G0624000 Rorug03G0341100
rosa_samantha	Rh3AG023100 Rh3BG023700 Rh3CG022800 Rh3DG023600 Rh4AG044800 Rh4BG040600 Rh4CG048200 Rh4DG042400
rosa_wichuraiana	Rw3G001850 Rw4G003510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	5 cut(s)	71, 86, 275, 302, 332
AclWI	GGATC	3 cut(s)	27, 348, 422
AcuI	CTGAAG	2 cut(s)	44, 83
AcyI	GRCGYC	2 cut(s)	131, 146
AfaI	GTAC	2 cut(s)	137, 173
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	373
Alw44I	GTGCAC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	27, 348, 422
ApaLI	GTGCAC	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	118, 262, 270
BciT130I	CCWGG	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	373
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	317, 376
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	109, 147
BmrFI	CCNGG	2 cut(s)	317, 376
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	131, 146
BsaJI	CCNNGG	3 cut(s)	111, 316, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	111, 316, 410
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	29, 149, 316, 329
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	19, 264, 340, 414
Bsp19I	CCATGG	2 cut(s)	111, 410
BspACI	CCGC	5 cut(s)	71, 86, 275, 302, 332
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	109, 147
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	27, 348, 422
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	111, 316, 410
BssMI	GATC	4 cut(s)	19, 264, 340, 414
BssNI	GRCGYC	2 cut(s)	131, 146
BssT1I	CCWWGG	2 cut(s)	111, 410
Bst2UI	CCWGG	1 cut(s)	376
BstACI	GRCGYC	2 cut(s)	131, 146
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	69, 330
BstDEI	CTNAG	2 cut(s)	293, 401
BstDSI	CCRYGG	2 cut(s)	111, 410
BstF5I	GGATG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	22, 267, 343, 417
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	19, 264, 340, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	315, 374
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	15
BstX2I	RGATCY	4 cut(s)	19, 264, 340, 414
BstYI	RGATCY	4 cut(s)	19, 264, 340, 414
BtgI	CCRYGG	2 cut(s)	111, 410
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	69, 330
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	136, 172
CviAII	CATG	2 cut(s)	112, 411
CviJI	RGCY	3 cut(s)	28, 67, 108
CviKI_1	RGCY	3 cut(s)	28, 67, 108
CviQI	GTAC	2 cut(s)	136, 172
DdeI	CTNAG	2 cut(s)	293, 401
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	4 cut(s)	21, 266, 342, 416
DpnII	GATC	4 cut(s)	19, 264, 340, 414
EciI	GGCGGA	3 cut(s)	86, 101, 291
Eco130I	CCWWGG	2 cut(s)	111, 410
Eco47I	GGWCC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	44, 83
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	111, 410
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	111, 410
FaeI	CATG	2 cut(s)	115, 414
FaiI	YATR	5 cut(s)	113, 141, 216, 218, 412
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	111, 410
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	333
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	149
HapII	CCGG	4 cut(s)	29, 149, 316, 329
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	2 cut(s)	131, 146
Hin1II	CATG	2 cut(s)	115, 414
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	47, 232, 289
HpaII	CCGG	4 cut(s)	29, 149, 316, 329
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	24, 63, 294
Hpy188III	TCNNGA	2 cut(s)	51, 418
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	4 cut(s)	110, 175, 301, 331
HpyCH4V	TGCA	3 cut(s)	13, 200, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	293, 401
Hsp92I	GRCGYC	2 cut(s)	131, 146
Hsp92II	CATG	2 cut(s)	115, 414
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	19, 264, 340, 414
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	42, 53, 109, 162, 186, 329, 342, 361, 388
MalI	GATC	4 cut(s)	21, 266, 342, 416
MboI	GATC	4 cut(s)	19, 264, 340, 414
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	4 cut(s)	19, 264, 340, 414
MhlI	GDGCHC	1 cut(s)	15
Mly113I	GGCGCC	1 cut(s)	146
MnlI	CCTC	9 cut(s)	94, 98, 145, 159, 246, 265, 278, 288, 342
MreI	CGCCGGCG	1 cut(s)	328
MroNI	GCCGGC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	311
MspI	CCGG	4 cut(s)	29, 149, 316, 329
MspR9I	CCNGG	2 cut(s)	317, 376
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	395
NaeI	GCCGGC	1 cut(s)	330
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	2 cut(s)	111, 410
NdeII	GATC	4 cut(s)	19, 264, 340, 414
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	115, 414
NlaIV	GGNNCC	2 cut(s)	109, 147
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	47, 232, 289
PfoI	TCCNGGA	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	334
PluTI	GGCGCC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	109, 147
PspPI	GGNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	4 cut(s)	19, 264, 340, 414
RsaI	GTAC	2 cut(s)	137, 173
RsaNI	GTAC	2 cut(s)	136, 172
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	19, 264, 340, 414
Sau96I	GGNCC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	317, 376
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	69, 121, 156, 170, 186, 299, 312
SfcI	CTRYAG	1 cut(s)	387
SfoI	GGCGCC	1 cut(s)	147
SgrAI	CRCCGGYG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SsiI	CCGC	5 cut(s)	71, 86, 275, 302, 332
SspDI	GGCGCC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	315, 374
StyI	CCWWGG	2 cut(s)	111, 410
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	3 cut(s)	47, 232, 289
TspGWI	ACGGA	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.