Rh4AG044800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
9444318 .. 9446253
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG044800.1

Sequence Viewer

Length: 825 bp
ATGAGTGAGCAACTCAAACGAGACTACCAAATCTGCGACGAGATCGGCCGGGGTCGATTCGGCGTCGTTTTCAAGGCCGTCAAGAACGGCGACGTCTTCGCCGTCAAGTCCATCGACAAGCGCCTGGCCTCCGGCGACTCCCTCGACGCTCAGTGTCTTTTAACCGAGCCGAAGATCCTCCGCCTGGTGGCTCCCCACCCCAACGTGATCGGCCTCCACGGGCTTTACGAGGACGAGGACCATCTCCACATGGTTCTCGACATGTGTGACGTGCCGGATCTGTTCCGACGCGTCACCCTCAGGTTATTCGCTGAGCCGGAGGCCGCCTCGGTAATGTCGCAGCTCATGCAGGCTGTGGCGCACTGTCACCGGCTCGGCGTGGCCCACCGCGATATCAAGCCGGATAACGTGCTGTTCGACGGCTGGGACCGGCTCCGCCTCGCTGACTTTGGATCGGCGGAGACGTTTGGCGAGGGGGAGCTGATGAGCGGCGTGGTCGGGACGCCGTACTACGTGGCGCCGGAGGTCCTTGCCGGGAGGGAGTACGGGGAGAAGGTGGACGTCTGGAGCGCCGGCGTGGTTTTGTACATAATGCTGGCCGGTTTCCCACCTTTTTACGGCGAGTCTGCTGAGGAGATCTTTGAGGCTGTGCGGAGGGCGAATTTGAGGTTTCCGGCGAGGGTTTTCCACTCTGTTTCGCCGTCTGTGAAGGAGTTGTTGAGGAGGATGCTCTGTAAGGACGTTTCTAGAAGATTCTCGGCTGAGCAAGTCCTCAGACACCCATGGATTACAAGTGGGGGAGGGGCCAGACCGAGCTGTGACTGA

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

6.01

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 263 9.2e-71 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 258 1.4e-26 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 96, 564
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 489
AccII CGCG 2 cut(s) 291, 390
AciI CCGC 7 cut(s) 181, 324, 388, 436, 458, 489, 652
AclWI GGATC 3 cut(s) 169, 285, 460
AcoI YGGCCR 2 cut(s) 46, 597
AcsI RAATTY 1 cut(s) 661
AcyI GRCGYC 5 cut(s) 63, 93, 503, 518, 561
AfaI GTAC 3 cut(s) 509, 545, 587
AfiI CCNNNNNNNGG 3 cut(s) 184, 187, 617
AflIII ACRYGT 2 cut(s) 261, 289
AgsI TTSAA 1 cut(s) 73
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 123, 183
AluBI AGCT 3 cut(s) 343, 481, 816
AluI AGCT 3 cut(s) 343, 481, 816
Alw26I GTCTC 2 cut(s) 15, 455
AlwI GGATC 3 cut(s) 169, 285, 460
AoxI GGCC 8 cut(s) 46, 75, 126, 211, 321, 381, 597, 804
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 661
AspLEI GCGC 4 cut(s) 123, 361, 520, 572
AspS9I GGNCC 5 cut(s) 238, 382, 427, 526, 804
AsuC2I CCSGG 2 cut(s) 50, 535
AsuHPI GGTGA 2 cut(s) 286, 359
AvaII GGWCC 3 cut(s) 238, 427, 526
AxyI CCTNAGG 1 cut(s) 299
BanI GGYRCC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 352
BccI CCATC 2 cut(s) 119, 249
BceAI ACGGC 7 cut(s) 62, 86, 103, 436, 490, 634, 685
BciT130I CCWGG 2 cut(s) 125, 185
BcnI CCSGG 2 cut(s) 50, 535
BcoDI GTCTC 2 cut(s) 15, 455
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 3 cut(s) 124, 521, 573
BglII AGATCT 1 cut(s) 636
BisI GCNGC 3 cut(s) 324, 341, 490
BlpI GCTNAGC 2 cut(s) 312, 762
BlsI GCNGC 3 cut(s) 325, 342, 491
Bme1390I CCNGG 4 cut(s) 50, 125, 185, 535
Bme18I GGWCC 3 cut(s) 238, 427, 526
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 5 cut(s) 238, 382, 427, 526, 804
BmiI GGNNCC 5 cut(s) 192, 428, 434, 519, 805
BmrFI CCNGG 4 cut(s) 50, 125, 185, 535
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 586
Bpu10I CCTNAGC 1 cut(s) 630
Bpu1102I GCTNAGC 2 cut(s) 312, 762
BpuMI CCSGG 2 cut(s) 50, 535
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 5 cut(s) 63, 93, 503, 518, 561
BsaJI CCNNGG 4 cut(s) 49, 217, 327, 782
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 187, 617
Bse118I RCCGGY 4 cut(s) 369, 429, 572, 599
Bse21I CCTNAGG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 125, 185
BseDI CCNNGG 4 cut(s) 49, 217, 327, 782
BseGI GGATG 1 cut(s) 732
BseLI CCNNNNNNNGG 3 cut(s) 184, 187, 617
BseMII CTCAG 6 cut(s) 164, 303, 313, 621, 753, 787
BseRI GAGGAG 2 cut(s) 647, 736
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 352
BseYI CCCAGC 1 cut(s) 423
Bsh1236I CGCG 2 cut(s) 291, 390
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 8 cut(s) 48, 77, 128, 213, 323, 383, 599, 806
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 440, 514
BslI CCNNNNNNNGG 3 cut(s) 184, 187, 617
BsmAI GTCTC 2 cut(s) 15, 455
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 440, 514
BsnI GGCC 8 cut(s) 48, 77, 128, 213, 323, 383, 599, 806
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 6 cut(s) 42, 174, 207, 277, 452, 636
Bsp1720I GCTNAGC 2 cut(s) 312, 762
Bsp19I CCATGG 1 cut(s) 782
BspACI CCGC 7 cut(s) 181, 324, 388, 436, 458, 489, 652
BspANI GGCC 8 cut(s) 48, 77, 128, 213, 323, 383, 599, 806
BspCNI CTCAG 6 cut(s) 163, 304, 312, 622, 754, 786
BspFNI CGCG 2 cut(s) 291, 390
BspLI GGNNCC 5 cut(s) 192, 428, 434, 519, 805
BspPI GGATC 3 cut(s) 169, 285, 460
BspT107I GGYRCC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 489
BsrFI RCCGGY 4 cut(s) 369, 429, 572, 599
BsrGI TGTACA 1 cut(s) 585
BssAI RCCGGY 4 cut(s) 369, 429, 572, 599
BssECI CCNNGG 4 cut(s) 49, 217, 327, 782
BssMI GATC 6 cut(s) 42, 174, 207, 277, 452, 636
BssNI GRCGYC 5 cut(s) 63, 93, 503, 518, 561
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 2 cut(s) 125, 185
Bst4CI ACNGT 1 cut(s) 365
BstACI GRCGYC 5 cut(s) 63, 93, 503, 518, 561
BstAPI GCANNNNNTGC 1 cut(s) 346
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 351, 574, 597
BstDEI CTNAG 6 cut(s) 150, 299, 312, 630, 762, 773
BstDSI CCRYGG 2 cut(s) 217, 782
BstF5I GGATG 1 cut(s) 732
BstFNI CGCG 2 cut(s) 291, 390
BstH2I RGCGCY 3 cut(s) 124, 521, 573
BstHHI GCGC 4 cut(s) 123, 361, 520, 572
BstKTI GATC 6 cut(s) 45, 177, 210, 280, 455, 639
BstMAI GTCTC 2 cut(s) 15, 455
BstMBI GATC 6 cut(s) 42, 174, 207, 277, 452, 636
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 2 cut(s) 125, 185
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 48, 123, 183, 533
BstUI CGCG 2 cut(s) 291, 390
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 3 cut(s) 174, 277, 636
BstYI RGATCY 3 cut(s) 174, 277, 636
BstZI CGGCCG 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 299
BsuRI GGCC 8 cut(s) 48, 77, 128, 213, 323, 383, 599, 806
BtgI CCRYGG 2 cut(s) 217, 782
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 732
BtsIMutI CAGTG 2 cut(s) 158, 361
Cac8I GCNNGC 3 cut(s) 351, 574, 597
CfoI GCGC 4 cut(s) 123, 361, 520, 572
Cfr10I RCCGGY 4 cut(s) 369, 429, 572, 599
Cfr13I GGNCC 5 cut(s) 238, 382, 427, 526, 804
CseI GACGC 5 cut(s) 52, 155, 280, 297, 511
Csp6I GTAC 3 cut(s) 508, 544, 586
CviAII CATG 4 cut(s) 250, 262, 346, 783
CviQI GTAC 3 cut(s) 508, 544, 586
DdeI CTNAG 6 cut(s) 150, 299, 312, 630, 762, 773
DinI GGCGCC 1 cut(s) 519
DpnI GATC 6 cut(s) 44, 176, 209, 279, 454, 638
DpnII GATC 6 cut(s) 42, 174, 207, 277, 452, 636
EaeI YGGCCR 2 cut(s) 46, 597
EagI CGGCCG 1 cut(s) 46
EciI GGCGGA 3 cut(s) 170, 425, 473
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 782
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 3 cut(s) 238, 427, 526
Eco52I CGGCCG 1 cut(s) 46
Eco81I CCTNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 123, 183
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 782
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 4 cut(s) 253, 265, 349, 786
FaiI YATR 5 cut(s) 251, 263, 347, 590, 784
FaqI GGGAC 2 cut(s) 440, 514
FatI CATG 4 cut(s) 249, 261, 345, 782
Fnu4HI GCNGC 3 cut(s) 324, 341, 490
FokI GGATG 1 cut(s) 739
Fsp4HI GCNGC 3 cut(s) 324, 341, 490
FspBI CTAG 1 cut(s) 747
GlaI GCGC 4 cut(s) 122, 360, 519, 571
GluI GCNGC 3 cut(s) 324, 341, 490
GsaI CCCAGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 586
HaeII RGCGCY 3 cut(s) 124, 521, 573
HaeIII GGCC 8 cut(s) 48, 77, 128, 213, 323, 383, 599, 806
HgaI GACGC 5 cut(s) 52, 155, 280, 297, 511
HhaI GCGC 4 cut(s) 123, 361, 520, 572
Hin1I GRCGYC 5 cut(s) 63, 93, 503, 518, 561
Hin1II CATG 4 cut(s) 253, 265, 349, 786
Hin6I GCGC 4 cut(s) 121, 359, 518, 570
HinP1I GCGC 4 cut(s) 121, 359, 518, 570
HinfI GANTC 4 cut(s) 57, 137, 623, 753
HphI GGTGA 2 cut(s) 286, 359
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 287, 776
Hpy188III TCNNGA 5 cut(s) 82, 257, 499, 565, 747
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 6 cut(s) 41, 68, 95, 149, 291, 422
HpyAV CCTTC 2 cut(s) 547, 703
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 8 cut(s) 93, 204, 270, 408, 464, 513, 561, 741
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 6 cut(s) 150, 299, 312, 630, 762, 773
HpySE526I ACGT 8 cut(s) 93, 204, 270, 408, 464, 513, 561, 741
Hsp92I GRCGYC 5 cut(s) 63, 93, 503, 518, 561
Hsp92II CATG 4 cut(s) 253, 265, 349, 786
HspAI GCGC 4 cut(s) 121, 359, 518, 570
KasI GGCGCC 1 cut(s) 517
KroI GCCGGC 1 cut(s) 572
KroNI GCCGGC 1 cut(s) 574
Kzo9I GATC 6 cut(s) 42, 174, 207, 277, 452, 636
LmnI GCTCC 4 cut(s) 196, 438, 478, 567
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 717
MaeI CTAG 1 cut(s) 747
MaeII ACGT 8 cut(s) 93, 204, 270, 408, 464, 513, 561, 741
MaeIII GTNAC 4 cut(s) 266, 292, 365, 818
MalI GATC 6 cut(s) 44, 176, 209, 279, 454, 638
MbiI CCGCTC 1 cut(s) 489
MboI GATC 6 cut(s) 42, 174, 207, 277, 452, 636
MboII GAAGA 3 cut(s) 88, 184, 762
MflI RGATCY 3 cut(s) 174, 277, 636
MluCI AATT 1 cut(s) 661
MluI ACGCGT 1 cut(s) 289
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 2 cut(s) 131, 632
MmeI TCCRAC 1 cut(s) 310
MreI CGCCGGCG 1 cut(s) 572
MroNI GCCGGC 1 cut(s) 572
MseI TTAA 1 cut(s) 161
MspR9I CCNGG 4 cut(s) 50, 125, 185, 535
MvaI CCWGG 2 cut(s) 125, 185
MvnI CGCG 2 cut(s) 291, 390
MwoI GCNNNNNNNGC 1 cut(s) 346
NaeI GCCGGC 1 cut(s) 574
NarI GGCGCC 1 cut(s) 518
NciI CCSGG 2 cut(s) 50, 535
NcoI CCATGG 1 cut(s) 782
NdeII GATC 6 cut(s) 42, 174, 207, 277, 452, 636
NgoMIV GCCGGC 1 cut(s) 572
NlaIII CATG 4 cut(s) 253, 265, 349, 786
NlaIV GGNNCC 5 cut(s) 192, 428, 434, 519, 805
NmeAIII GCCGAG 2 cut(s) 354, 737
NmuCI GTSAC 4 cut(s) 266, 292, 365, 818
NspI RCATGY 1 cut(s) 265
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 4 cut(s) 99, 225, 414, 461
PdiI GCCGGC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 57, 753
PkrI GCNGC 3 cut(s) 325, 342, 491
PleI GAGTC 2 cut(s) 131, 631
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 2 cut(s) 131, 631
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 526
PscI ACATGT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 123, 183
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 2 cut(s) 123, 183
PspN4I GGNNCC 5 cut(s) 192, 428, 434, 519, 805
PspPI GGNCC 5 cut(s) 238, 382, 427, 526, 804
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 3 cut(s) 174, 277, 636
RsaI GTAC 3 cut(s) 509, 545, 587
RsaNI GTAC 3 cut(s) 508, 544, 586
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 3 cut(s) 324, 341, 490
Sau3AI GATC 6 cut(s) 42, 174, 207, 277, 452, 636
Sau96I GGNCC 5 cut(s) 238, 382, 427, 526, 804
SchI GAGTC 2 cut(s) 131, 632
ScrFI CCNGG 4 cut(s) 50, 125, 185, 535
SfaNI GCATC 1 cut(s) 717
SfoI GGCGCC 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 3 cut(s) 238, 427, 526
Sse9I AATT 1 cut(s) 661
SsiI CCGC 7 cut(s) 181, 324, 388, 436, 458, 489, 652
SspDI GGCGCC 1 cut(s) 517
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 48, 123, 183, 533
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 8 cut(s) 96, 207, 273, 411, 467, 516, 564, 744
TaqI TCGA 5 cut(s) 55, 114, 144, 258, 417
TasI AATT 1 cut(s) 661
TatI WGTACW 1 cut(s) 585
TauI GCSGC 2 cut(s) 326, 492
TfiI GAWTC 2 cut(s) 57, 753
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 2 cut(s) 158, 368
TseFI GTSAC 4 cut(s) 266, 292, 365, 818
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 4 cut(s) 266, 292, 365, 818
TspRI CASTG 2 cut(s) 158, 368
VpaK11BI GGWCC 3 cut(s) 238, 427, 526
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 747
ZraI GACGTC 2 cut(s) 94, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.