FvH4_6g02090
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1222985 .. 1224741
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02090.t1

Sequence Viewer

Length: 828 bp
ATGTACGACACACTCAAAAACACCTACCAACTCTTCGAAGAAATCGGCCGCGGCCGATTCGGCACCATCCTCCGCGCCTTCTGCCCCACTTCCGCCGCCTCCGTCGCTGTCAAGATCATCGACAAGACTCTCCTCGCCGACGAAACCGACCGCGCATGCATCGACAAAGAACCCAAGATCATGTCCCTCTTGTCTCCCCACCCCAACATTCTCCAAATCCACAACGTCTTCGAAACAGAGGACTCCATGGCCATAGTCCTCGACCTCTGCAGCCCCGAAACCTTATACGACAAGATCGCTCACCGGACCTTGTCAGAGCCCGAAGCCGCCGGCATCATGAAACAGCTCCTCGCAGCTGTTTCCCACTGCCACAGAATGGGGGTGGTCCACCGGGATCTGAAGCCGGAGAATGTTCTGTTTGATTCAAGAAACGTTTTGAAGCTGGCGGATTTCGGGTCGGCGGAGTGGTTTTCCGGCGAGGGAGAGTGCATGGAAGGTGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTGTTGATGGGGAGGGTGTATAATGAGAAGGTGGATGTCTGGAGTGCAGGGGTCATGATGTATATAATGTTGGGTGGGATTCCTCCGTTTTATGGTGAAACGGCGACGGAGATCTTTGAGGCGGTTCTGAGGGGGAATCTGAGGTTCCCGCCGAAGGTTTTCCGGGGAGTTTCGCCGGCGGCGAAGGATCTGCTGAGGAAGATGATGTGTAGAGACGTTTCCAGGAGACTTTCTGCAGAGCAAGCACTTAGGCACCCATGGATCTTGAGTGGAGGAGAGTCCAACCCAATGGACTGA

Protein Analysis

276

Amino Acids

30.7

Weight (kDa)

5.71

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 265 1.8e-70 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 258 4.8e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 62, 523, 783
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 3 cut(s) 51, 75, 153
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 402, 726, 800
AcoI YGGCCR 3 cut(s) 46, 52, 249
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 2 cut(s) 509, 524
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 376, 623, 685
AgsI TTSAA 2 cut(s) 426, 439
AjnI CCWGG 1 cut(s) 752
AluBI AGCT 3 cut(s) 346, 356, 442
AluI AGCT 3 cut(s) 346, 356, 442
Alw26I GTCTC 3 cut(s) 198, 738, 751
AlwI GGATC 3 cut(s) 402, 726, 800
AoxI GGCC 3 cut(s) 46, 52, 249
ApeKI GCWGC 2 cut(s) 270, 353
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 3 cut(s) 77, 155, 526
AspS9I GGNCC 2 cut(s) 306, 385
AsuC2I CCSGG 2 cut(s) 392, 695
AsuHPI GGTGA 2 cut(s) 293, 638
AsuII TTCGAA 2 cut(s) 36, 231
AvaII GGWCC 2 cut(s) 306, 385
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 3 cut(s) 62, 523, 783
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 220
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 282, 365
BccI CCATC 2 cut(s) 74, 532
BceAI ACGGC 2 cut(s) 496, 648
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 1 cut(s) 754
BcnI CCSGG 2 cut(s) 392, 695
BcoDI GTCTC 3 cut(s) 198, 738, 751
BfmI CTRYAG 2 cut(s) 268, 765
BfoI RGCGCY 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 642
BisI GCNGC 7 cut(s) 49, 52, 96, 271, 327, 354, 711
BlsI GCNGC 7 cut(s) 50, 53, 97, 272, 328, 355, 712
Bme1390I CCNGG 3 cut(s) 392, 695, 754
Bme18I GGWCC 2 cut(s) 306, 385
BmgT120I GGNCC 2 cut(s) 306, 385
BmiI GGNNCC 4 cut(s) 64, 525, 677, 785
BmrFI CCNGG 3 cut(s) 392, 695, 754
BmsI GCATC 2 cut(s) 168, 342
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 725
Bpu14I TTCGAA 2 cut(s) 36, 231
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 2 cut(s) 392, 695
BsaAI YACGTR 1 cut(s) 520
BsaHI GRCGYC 2 cut(s) 509, 524
BsaJI CCNNGG 4 cut(s) 49, 246, 694, 788
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 623, 685
Bse118I RCCGGY 2 cut(s) 329, 706
BseBI CCWGG 1 cut(s) 754
BseDI CCNNGG 4 cut(s) 49, 246, 694, 788
BseGI GGATG 2 cut(s) 66, 571
BseLI CCNNNNNNNGG 3 cut(s) 376, 623, 685
BseMII CTCAG 3 cut(s) 650, 662, 716
BseRI GAGGAG 3 cut(s) 122, 338, 819
BseX3I CGGCCG 2 cut(s) 46, 52
BseXI GCAGC 2 cut(s) 282, 365
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 3 cut(s) 51, 75, 153
Bsh1285I CGRYCG 3 cut(s) 49, 55, 151
BshFI GGCC 3 cut(s) 48, 54, 251
BshNI GGYRCC 3 cut(s) 62, 523, 783
BsiEI CGRYCG 3 cut(s) 49, 55, 151
BsiSI CCGG 8 cut(s) 304, 330, 391, 404, 474, 527, 694, 707
BslFI GGGAC 2 cut(s) 169, 520
BslI CCNNNNNNNGG 3 cut(s) 376, 623, 685
BsmAI GTCTC 3 cut(s) 198, 738, 751
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 2 cut(s) 169, 520
BsnI GGCC 3 cut(s) 48, 54, 251
Bsp119I TTCGAA 2 cut(s) 36, 231
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
Bsp19I CCATGG 2 cut(s) 246, 788
BspANI GGCC 3 cut(s) 48, 54, 251
BspCNI CTCAG 3 cut(s) 651, 663, 717
BspFNI CGCG 3 cut(s) 51, 75, 153
BspHI TCATGA 2 cut(s) 336, 585
BspLI GGNNCC 4 cut(s) 64, 525, 677, 785
BspMAI CTGCAG 2 cut(s) 272, 769
BspPI GGATC 3 cut(s) 402, 726, 800
BspT104I TTCGAA 2 cut(s) 36, 231
BspT107I GGYRCC 3 cut(s) 62, 523, 783
BsrFI RCCGGY 2 cut(s) 329, 706
BssAI RCCGGY 2 cut(s) 329, 706
BssECI CCNNGG 4 cut(s) 49, 246, 694, 788
BssMI GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
BssNI GRCGYC 2 cut(s) 509, 524
BssT1I CCWWGG 2 cut(s) 246, 788
Bst2UI CCWGG 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 509, 524
BstBAI YACGTR 1 cut(s) 520
BstBI TTCGAA 2 cut(s) 36, 231
BstC8I GCNNGC 5 cut(s) 157, 331, 444, 708, 774
BstDEI CTNAG 4 cut(s) 659, 671, 725, 779
BstDSI CCRYGG 3 cut(s) 49, 246, 788
BstF5I GGATG 2 cut(s) 66, 571
BstFNI CGCG 3 cut(s) 51, 75, 153
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 3 cut(s) 77, 155, 526
BstKTI GATC 7 cut(s) 117, 180, 297, 397, 645, 721, 795
BstMAI GTCTC 3 cut(s) 198, 738, 751
BstMBI GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
BstMCI CGRYCG 3 cut(s) 49, 55, 151
BstMWI GCNNNNNNNGC 4 cut(s) 60, 81, 104, 773
BstNI CCWGG 1 cut(s) 754
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 390, 693, 752
BstSFI CTRYAG 2 cut(s) 268, 765
BstUI CGCG 3 cut(s) 51, 75, 153
BstV1I GCAGC 2 cut(s) 282, 365
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 4 cut(s) 394, 642, 718, 792
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 4 cut(s) 394, 642, 718, 792
BstZI CGGCCG 2 cut(s) 46, 52
BsuRI GGCC 3 cut(s) 48, 54, 251
BtgI CCRYGG 3 cut(s) 49, 246, 788
BtsCI GGATG 2 cut(s) 66, 571
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 157, 331, 444, 708, 774
CciI TCATGA 2 cut(s) 336, 585
CfoI GCGC 3 cut(s) 77, 155, 526
Cfr10I RCCGGY 2 cut(s) 329, 706
Cfr13I GGNCC 2 cut(s) 306, 385
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 4
CviAII CATG 7 cut(s) 156, 181, 247, 337, 490, 586, 789
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 659, 671, 725, 779
DinI GGCGCC 1 cut(s) 525
DpnI GATC 7 cut(s) 116, 179, 296, 396, 644, 720, 794
DpnII GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
EaeI YGGCCR 3 cut(s) 46, 52, 249
EagI CGGCCG 2 cut(s) 46, 52
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 3 cut(s) 82, 461, 476
EclXI CGGCCG 2 cut(s) 46, 52
Eco130I CCWWGG 2 cut(s) 246, 788
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 306, 385
Eco52I CGGCCG 2 cut(s) 46, 52
Eco57I CTGAAG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 752
EcoT14I CCWWGG 2 cut(s) 246, 788
EcoT22I ATGCAT 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 246, 788
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 7 cut(s) 159, 184, 250, 340, 493, 589, 792
FaqI GGGAC 2 cut(s) 169, 520
FatI CATG 7 cut(s) 155, 180, 246, 336, 489, 585, 788
FauI CCCGC 1 cut(s) 687
Fnu4HI GCNGC 7 cut(s) 49, 52, 96, 271, 327, 354, 711
FokI GGATG 2 cut(s) 53, 578
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 7 cut(s) 49, 52, 96, 271, 327, 354, 711
GlaI GCGC 3 cut(s) 76, 154, 525
GluI GCNGC 7 cut(s) 49, 52, 96, 271, 327, 354, 711
GsuI CTGGAG 1 cut(s) 592
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 3 cut(s) 48, 54, 251
HapII CCGG 8 cut(s) 304, 330, 391, 404, 474, 527, 694, 707
HgaI GACGC 1 cut(s) 517
HhaI GCGC 3 cut(s) 77, 155, 526
Hin1I GRCGYC 2 cut(s) 509, 524
Hin1II CATG 7 cut(s) 159, 184, 250, 340, 493, 589, 792
Hin6I GCGC 3 cut(s) 75, 153, 524
HinP1I GCGC 3 cut(s) 75, 153, 524
HinfI GANTC 7 cut(s) 57, 127, 242, 422, 610, 667, 809
HpaII CCGG 8 cut(s) 304, 330, 391, 404, 474, 527, 694, 707
HphI GGTGA 2 cut(s) 293, 638
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 4 cut(s) 316, 399, 660, 672
Hpy188III TCNNGA 6 cut(s) 112, 337, 426, 571, 586, 796
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 107, 143, 640
HpyAV CCTTC 5 cut(s) 88, 488, 553, 679, 709
HpyCH4IV ACGT 4 cut(s) 225, 432, 519, 747
HpyCH4V TGCA 5 cut(s) 159, 270, 489, 578, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 81, 104, 773
HpyF3I CTNAG 4 cut(s) 659, 671, 725, 779
HpySE526I ACGT 4 cut(s) 225, 432, 519, 747
Hsp92I GRCGYC 2 cut(s) 509, 524
Hsp92II CATG 7 cut(s) 159, 184, 250, 340, 493, 589, 792
HspAI GCGC 3 cut(s) 75, 153, 524
KasI GGCGCC 1 cut(s) 523
KroI GCCGGC 2 cut(s) 329, 706
KroNI GCCGGC 2 cut(s) 331, 708
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 2 cut(s) 282, 365
LweI GCATC 2 cut(s) 168, 342
MaeII ACGT 4 cut(s) 225, 432, 519, 747
MalI GATC 7 cut(s) 116, 179, 296, 396, 644, 720, 794
MboI GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
MboII GAAGA 4 cut(s) 25, 50, 220, 742
MflI RGATCY 4 cut(s) 394, 642, 718, 792
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 3 cut(s) 121, 236, 818
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 161
MreI CGCCGGCG 1 cut(s) 706
MroNI GCCGGC 2 cut(s) 329, 706
MroXI GAANNNNTTC 1 cut(s) 689
MscI TGGCCA 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 2 cut(s) 51, 356
MspI CCGG 8 cut(s) 304, 330, 391, 404, 474, 527, 694, 707
MspR9I CCNGG 3 cut(s) 392, 695, 754
MvaI CCWGG 1 cut(s) 754
MvnI CGCG 3 cut(s) 51, 75, 153
MwoI GCNNNNNNNGC 4 cut(s) 60, 81, 104, 773
NaeI GCCGGC 2 cut(s) 331, 708
NarI GGCGCC 1 cut(s) 524
NciI CCSGG 2 cut(s) 392, 695
NcoI CCATGG 2 cut(s) 246, 788
NdeII GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
NgoMIV GCCGGC 2 cut(s) 329, 706
NlaIII CATG 7 cut(s) 159, 184, 250, 340, 493, 589, 792
NlaIV GGNNCC 4 cut(s) 64, 525, 677, 785
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 2 cut(s) 36, 231
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 2 cut(s) 336, 585
PcsI WCGNNNNNNNCGW 1 cut(s) 710
PdiI GCCGGC 2 cut(s) 331, 708
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 57, 422, 610, 667
PflFI GACNNNGTC 1 cut(s) 310
PflMI CCANNNNNTGG 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 7 cut(s) 50, 53, 97, 272, 328, 355, 712
PleI GAGTC 3 cut(s) 121, 236, 817
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 3 cut(s) 121, 236, 817
Ppu21I YACGTR 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 752
PspGI CCWGG 1 cut(s) 752
PspN4I GGNNCC 4 cut(s) 64, 525, 677, 785
PspPI GGNCC 2 cut(s) 306, 385
PstI CTGCAG 2 cut(s) 272, 769
PsuI RGATCY 4 cut(s) 394, 642, 718, 792
PsyI GACNNNGTC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacII CCGCGG 1 cut(s) 52
SatI GCNGC 7 cut(s) 49, 52, 96, 271, 327, 354, 711
Sau3AI GATC 7 cut(s) 114, 177, 294, 394, 642, 718, 792
Sau96I GGNCC 2 cut(s) 306, 385
SchI GAGTC 3 cut(s) 121, 236, 818
ScrFI CCNGG 3 cut(s) 392, 695, 754
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 2 cut(s) 168, 342
SfcI CTRYAG 2 cut(s) 268, 765
SfoI GGCGCC 1 cut(s) 525
Sfr303I CCGCGG 1 cut(s) 52
SfuI TTCGAA 2 cut(s) 36, 231
SgrAI CRCCGGYG 1 cut(s) 706
SgrBI CCGCGG 1 cut(s) 52
SinI GGWCC 2 cut(s) 306, 385
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SphI GCATGC 1 cut(s) 159
SspDI GGCGCC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 390, 693, 752
StyI CCWWGG 2 cut(s) 246, 788
TaiI ACGT 4 cut(s) 228, 435, 522, 750
TaqI TCGA 5 cut(s) 36, 120, 162, 231, 261
TauI GCSGC 5 cut(s) 51, 54, 98, 329, 713
TfiI GAWTC 4 cut(s) 57, 422, 610, 667
TscAI CASTG 1 cut(s) 371
TseI GCWGC 2 cut(s) 270, 353
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 3 cut(s) 91, 606, 653
TspRI CASTG 1 cut(s) 371
Tth111I GACNNNGTC 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 306, 385
XceI RCATGY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 689
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.