Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004122

Physical Location & Seq

Genomic Coordinates Reverse (-)

73993012 .. 73993200

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0624000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTCGTTTCCAGAAAGTCAGTTGAATAAAGCAAATGAGTTGGCTCCCATATTTAATGAACTTGTTGATCGAGTGAGTTTGGATACGAGATTCCTGCAGGATTCACTGTCCAGAACAAAGAAAGCAGATCCTTTTACATCTAGACTTCTAGATATTCATGCCAAGATGCTAGAGAATAACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009636 GO:0009931 GO:0009987 GO:0010033 GO:0010243 GO:0010857 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0046777 GO:0046898 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060992 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

8.12

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	2 - 60	2.4e-14	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08650 AT1G08650 AT3G04530
fragaria_vesca	FvH4_4g03560 FvH4_6g02090 FvH4_6g08930
malus_domestica	MD04G1229200.v1.1 MD16G1217500.v1.1
prunus_persica	Prupe.1G038800_v2.0.a1 Prupe.6G349100_v2.0.a1
pyrus_communis	pycom12g22590
rosa_chinensis	RchiOBHm_Chr3g0449921 RchiOBHm_Chr4g0392911
rosa_laevigata	RLG00000009782 RLG00000025775
rosa_multiflora	Rmu_co8401231.1_g000001 Rmu_sc0002646.1_g000001 Rmu_sc0005524.1_g000005 Rmu_sc0008339.1_g000031
rosa_roxburghii	Rroxscaffold_5G00338030 Rroxscaffold_6G00427720
rosa_rugosa	Rorug02G0624000 Rorug03G0341100
rosa_samantha	Rh3AG023100 Rh3BG023700 Rh3CG022800 Rh3DG023600 Rh4AG044800 Rh4BG040600 Rh4CG048200 Rh4DG042400
rosa_wichuraiana	Rw3G001850 Rw4G003510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	25
AlwI	GGATC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciVI	GTATCC	1 cut(s)	76
BfaI	CTAG	3 cut(s)	141, 149, 170
BfmI	CTRYAG	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	67, 127
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	122
BssMI	GATC	2 cut(s)	67, 127
Bst4CI	ACNGT	1 cut(s)	108
BstKTI	GATC	2 cut(s)	70, 130
BstMBI	GATC	2 cut(s)	67, 127
BstSFI	CTRYAG	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	104
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	1 cut(s)	44
CviKI_1	RGCY	1 cut(s)	44
DpnI	GATC	2 cut(s)	69, 129
DpnII	GATC	2 cut(s)	67, 127
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	50, 159
FatI	CATG	1 cut(s)	157
FspBI	CTAG	3 cut(s)	141, 149, 170
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	90, 101
Hpy188III	TCNNGA	4 cut(s)	11, 111, 141, 149
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	67, 127
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	24, 83, 107, 124
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	3 cut(s)	141, 149, 170
MalI	GATC	2 cut(s)	69, 129
MboI	GATC	2 cut(s)	67, 127
MflI	RGATCY	1 cut(s)	127
MseI	TTAA	1 cut(s)	54
NdeII	GATC	2 cut(s)	67, 127
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	90, 101
PspN4I	GGNNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	67, 127
SbfI	CCTGCAGG	1 cut(s)	99
SdaI	CCTGCAGG	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	95
Sse8387I	CCTGCAGG	1 cut(s)	99
SspMI	CTAG	3 cut(s)	141, 149, 170
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	90, 101
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	72, 146
TspRI	CASTG	1 cut(s)	111
XbaI	TCTAGA	2 cut(s)	140, 148
XspI	CTAG	3 cut(s)	141, 149, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.