MD04G1229200.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
30948399 .. 30950132
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1229200.v1.1.491

Sequence Viewer

Length: 831 bp
ATGTATGACACATTGAAGAACTCCTACCAACTCTTCGAAGAAATCGGCCGCGGCCGGTTCGGCATCATCGTCCGAGCCTTCTCGCCCGACTCGGCCGAGTTCGTCGCCTGCAAGATCATCGACAAATCGGCCCTTACCGACGAAACCGACCGTGCCTGCCTCGAGAACGAGCCCAAGATAATGACCCTTTTGTCCCCGCATCCCAACATTCTCAAGCTCTTTGACGTCTTCGAAACAGAGGACTCGCTTGCCATGGTGCTCGAGCTCTGCGAGCCCGCCACGCTCTACGACCGCATCGTGCAGCGCACGCTCTCGGAGCCCGAGGCCGCCGCGATCATGAAGCAGCTGCTCGAGGCCGTCTCGCATTGCCACCGCCTCGGGGTGGTTCATAGGGATTTGAAGCCGGAGAATGTTTTGTTCGACTCGAGAAACAATTTGAAGCTCGCGGATTTCGGGTCGGCGGAGTGGACCCGCGACGGCAGCGCCATGGAGGGCGTTGTCGGGACGCCGTACTACGTCGCGCCGGAGGTGCTGATGGGCAGGGAGTATAATGAAAAGATCGACGTCTGGAGCGCCGGCGTGATGATGTACATAATGCTCGGCGGGATTCCTCCGTTTTACGGGGAGTCGGCGACGGAGATCTTCGAGGCGGTTTTGAGAGGGAATTTGAGATTTCCGCCGAAGGCTTTCCGATCTGTGTCGCCTGGGGCGAAGGATCTGTTGAGGAAGATGATCTGCAGAGACGCTTCCAGAAGACTCTCTGCTGACCAGGCACTTAGGCACCCATGGATCTTAAGTGGTGGAGAAGCAAATCCAATTGACCAAATCTGA

Protein Analysis

277

Amino Acids

30.96

Weight (kDa)

5.19

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 264 3.2e-74 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 255 6.3e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 190
AatII GACGTC 2 cut(s) 228, 567
AccB1I GGYRCC 1 cut(s) 780
AccII CGCG 5 cut(s) 51, 332, 446, 474, 521
AclWI GGATC 2 cut(s) 723, 797
AcoI YGGCCR 3 cut(s) 46, 52, 93
AcsI RAATTY 1 cut(s) 664
AcyI GRCGYC 3 cut(s) 225, 506, 564
AfaI GTAC 2 cut(s) 512, 590
AfiI CCNNNNNNNGG 3 cut(s) 379, 382, 620
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 3 cut(s) 16, 400, 439
AjnI CCWGG 2 cut(s) 703, 768
AluBI AGCT 4 cut(s) 217, 265, 346, 442
AluI AGCT 4 cut(s) 217, 265, 346, 442
Alw21I GWGCWC 2 cut(s) 261, 267
Alw26I GTCTC 2 cut(s) 364, 735
AlwI GGATC 2 cut(s) 723, 797
Ama87I CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
AoxI GGCC 6 cut(s) 46, 52, 93, 129, 324, 354
ApeKI GCWGC 4 cut(s) 301, 343, 346, 480
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 4 cut(s) 306, 485, 523, 575
AspS9I GGNCC 2 cut(s) 130, 468
AsuII TTCGAA 2 cut(s) 36, 231
AvaI CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
AvaII GGWCC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 780
BanII GRGCYC 4 cut(s) 174, 267, 276, 321
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BbsI GAAGAC 2 cut(s) 220, 760
Bbv12I GWGCWC 2 cut(s) 261, 267
BbvI GCAGC 4 cut(s) 313, 333, 355, 492
BccI CCATC 1 cut(s) 529
BceAI ACGGC 3 cut(s) 341, 493, 493
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 705, 770
BcoDI GTCTC 2 cut(s) 364, 735
BfmI CTRYAG 1 cut(s) 736
BfoI RGCGCY 2 cut(s) 486, 576
BfrI CTTAAG 1 cut(s) 793
BglI GCCNNNNNGGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 639
BisI GCNGC 8 cut(s) 49, 52, 302, 327, 330, 344, 347, 481
BlsI GCNGC 8 cut(s) 50, 53, 303, 328, 331, 345, 348, 482
Bme1390I CCNGG 2 cut(s) 705, 770
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
BmgT120I GGNCC 2 cut(s) 130, 468
BmiI GGNNCC 3 cut(s) 318, 470, 782
BmrFI CCNGG 2 cut(s) 705, 770
BmsI GCATC 3 cut(s) 72, 208, 303
BpiI GAAGAC 2 cut(s) 220, 760
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 1 cut(s) 589
Bpu14I TTCGAA 2 cut(s) 36, 231
BpuEI CTTGAG 1 cut(s) 197
BsaHI GRCGYC 3 cut(s) 225, 506, 564
BsaJI CCNNGG 7 cut(s) 49, 252, 321, 376, 486, 704, 785
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 382, 620
Bse118I RCCGGY 2 cut(s) 54, 575
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 705, 770
BseDI CCNNGG 7 cut(s) 49, 252, 321, 376, 486, 704, 785
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 379, 382, 620
BseMI GCAATG 1 cut(s) 364
BseX3I CGGCCG 3 cut(s) 46, 52, 93
BseXI GCAGC 4 cut(s) 313, 333, 355, 492
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 5 cut(s) 51, 332, 446, 474, 521
Bsh1285I CGRYCG 5 cut(s) 49, 55, 96, 151, 292
BshFI GGCC 6 cut(s) 48, 54, 95, 131, 326, 356
BshNI GGYRCC 1 cut(s) 780
BsiEI CGRYCG 5 cut(s) 49, 55, 96, 151, 292
BsiHKAI GWGCWC 2 cut(s) 261, 267
BsiHKCI CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
BsiSI CCGG 4 cut(s) 55, 404, 524, 576
BslFI GGGAC 2 cut(s) 178, 517
BslI CCNNNNNNNGG 3 cut(s) 379, 382, 620
BsmAI GTCTC 2 cut(s) 364, 735
BsmBI CGTCTC 2 cut(s) 364, 735
BsmFI GGGAC 2 cut(s) 178, 517
BsnI GGCC 6 cut(s) 48, 54, 95, 131, 326, 356
BsoBI CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
Bsp119I TTCGAA 2 cut(s) 36, 231
Bsp1286I GDGCHC 5 cut(s) 174, 261, 267, 276, 321
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
Bsp19I CCATGG 3 cut(s) 252, 486, 785
BspANI GGCC 6 cut(s) 48, 54, 95, 131, 326, 356
BspFNI CGCG 5 cut(s) 51, 332, 446, 474, 521
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 318, 470, 782
BspMAI CTGCAG 1 cut(s) 740
BspPI GGATC 2 cut(s) 723, 797
BspT104I TTCGAA 2 cut(s) 36, 231
BspT107I GGYRCC 1 cut(s) 780
BspTI CTTAAG 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 54, 575
BsrGI TGTACA 1 cut(s) 588
BssAI RCCGGY 2 cut(s) 54, 575
BssECI CCNNGG 7 cut(s) 49, 252, 321, 376, 486, 704, 785
BssMI GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
BssNI GRCGYC 3 cut(s) 225, 506, 564
BssT1I CCWWGG 3 cut(s) 252, 486, 785
Bst2UI CCWGG 2 cut(s) 705, 770
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 3 cut(s) 225, 506, 564
BstAFI CTTAAG 1 cut(s) 793
BstAUI TGTACA 1 cut(s) 588
BstBI TTCGAA 2 cut(s) 36, 231
BstC8I GCNNGC 8 cut(s) 109, 157, 249, 272, 276, 308, 444, 577
BstDEI CTNAG 1 cut(s) 776
BstDSI CCRYGG 4 cut(s) 49, 252, 486, 785
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 5 cut(s) 51, 332, 446, 474, 521
BstH2I RGCGCY 2 cut(s) 486, 576
BstHHI GCGC 4 cut(s) 306, 485, 523, 575
BstKTI GATC 8 cut(s) 117, 336, 561, 642, 695, 718, 735, 792
BstMAI GTCTC 2 cut(s) 364, 735
BstMBI GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
BstMCI CGRYCG 5 cut(s) 49, 55, 96, 151, 292
BstMWI GCNNNNNNNGC 8 cut(s) 60, 271, 280, 307, 316, 480, 529, 770
BstNI CCWGG 2 cut(s) 705, 770
BstSCI CCNGG 2 cut(s) 703, 768
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 5 cut(s) 51, 332, 446, 474, 521
BstV1I GCAGC 4 cut(s) 313, 333, 355, 492
BstV2I GAAGAC 2 cut(s) 220, 760
BstX2I RGATCY 3 cut(s) 639, 715, 789
BstYI RGATCY 3 cut(s) 639, 715, 789
BstZI CGGCCG 3 cut(s) 46, 52, 93
BsuRI GGCC 6 cut(s) 48, 54, 95, 131, 326, 356
BtgI CCRYGG 4 cut(s) 49, 252, 486, 785
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 8 cut(s) 109, 157, 249, 272, 276, 308, 444, 577
CciI TCATGA 1 cut(s) 336
CfoI GCGC 4 cut(s) 306, 485, 523, 575
Cfr10I RCCGGY 2 cut(s) 54, 575
Cfr13I GGNCC 2 cut(s) 130, 468
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 2 cut(s) 514, 752
Csp6I GTAC 2 cut(s) 511, 589
CviAII CATG 4 cut(s) 253, 337, 487, 786
CviQI GTAC 2 cut(s) 511, 589
DdeI CTNAG 1 cut(s) 776
DpnI GATC 8 cut(s) 116, 335, 560, 641, 694, 717, 734, 791
DpnII GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
DrdI GACNNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 3 cut(s) 46, 52, 93
EagI CGGCCG 3 cut(s) 46, 52, 93
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 2 cut(s) 476, 666
Ecl136II GAGCTC 1 cut(s) 265
EclXI CGGCCG 3 cut(s) 46, 52, 93
Eco130I CCWWGG 3 cut(s) 252, 486, 785
Eco24I GRGCYC 4 cut(s) 174, 267, 276, 321
Eco47I GGWCC 1 cut(s) 468
Eco52I CGGCCG 3 cut(s) 46, 52, 93
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 6 cut(s) 161, 260, 320, 350, 377, 424
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 703, 768
EcoT14I CCWWGG 3 cut(s) 252, 486, 785
EcoT38I GRGCYC 4 cut(s) 174, 267, 276, 321
ErhI CCWWGG 3 cut(s) 252, 486, 785
Esp3I CGTCTC 2 cut(s) 364, 735
FaeI CATG 4 cut(s) 256, 340, 490, 789
FaiI YATR 8 cut(s) 6, 254, 338, 390, 488, 549, 593, 787
FaqI GGGAC 2 cut(s) 178, 517
FatI CATG 4 cut(s) 252, 336, 486, 785
FauI CCCGC 4 cut(s) 204, 283, 479, 596
Fnu4HI GCNGC 8 cut(s) 49, 52, 302, 327, 330, 344, 347, 481
FokI GGATG 1 cut(s) 186
FriOI GRGCYC 4 cut(s) 174, 267, 276, 321
Fsp4HI GCNGC 8 cut(s) 49, 52, 302, 327, 330, 344, 347, 481
GlaI GCGC 4 cut(s) 305, 484, 522, 574
GluI GCNGC 8 cut(s) 49, 52, 302, 327, 330, 344, 347, 481
GsuI CTGGAG 1 cut(s) 589
HaeII RGCGCY 2 cut(s) 486, 576
HaeIII GGCC 6 cut(s) 48, 54, 95, 131, 326, 356
HapII CCGG 4 cut(s) 55, 404, 524, 576
HgaI GACGC 2 cut(s) 514, 752
HhaI GCGC 4 cut(s) 306, 485, 523, 575
Hin1I GRCGYC 3 cut(s) 225, 506, 564
Hin1II CATG 4 cut(s) 256, 340, 490, 789
Hin6I GCGC 4 cut(s) 304, 483, 521, 573
HinP1I GCGC 4 cut(s) 304, 483, 521, 573
HinfI GANTC 6 cut(s) 89, 242, 422, 607, 626, 756
HpaII CCGG 4 cut(s) 55, 404, 524, 576
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 74, 316, 692, 830
Hpy188III TCNNGA 6 cut(s) 163, 337, 426, 502, 568, 750
Hpy8I GTNNAC 1 cut(s) 468
Hpy99I CGWCG 6 cut(s) 107, 143, 479, 521, 566, 637
HpyAV CCTTC 3 cut(s) 88, 676, 706
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 3 cut(s) 225, 516, 564
HpyCH4V TGCA 3 cut(s) 111, 301, 738
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 271, 280, 307, 316, 480, 529, 770
HpyF3I CTNAG 1 cut(s) 776
HpySE526I ACGT 3 cut(s) 225, 516, 564
Hsp92I GRCGYC 3 cut(s) 225, 506, 564
Hsp92II CATG 4 cut(s) 256, 340, 490, 789
HspAI GCGC 4 cut(s) 304, 483, 521, 573
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
LmnI GCTCC 2 cut(s) 316, 570
Lsp1109I GCAGC 4 cut(s) 313, 333, 355, 492
LweI GCATC 3 cut(s) 72, 208, 303
MaeII ACGT 3 cut(s) 225, 516, 564
MalI GATC 8 cut(s) 116, 335, 560, 641, 694, 717, 734, 791
MboI GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
MboII GAAGA 7 cut(s) 25, 28, 50, 220, 634, 739, 765
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 3 cut(s) 639, 715, 789
MhlI GDGCHC 5 cut(s) 174, 261, 267, 276, 321
MluCI AATT 3 cut(s) 433, 664, 816
MlyI GAGTC 5 cut(s) 83, 236, 416, 635, 750
MreI CGCCGGCG 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 1 cut(s) 794
MspA1I CMGCKG 2 cut(s) 51, 346
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 4 cut(s) 55, 404, 524, 576
MspR9I CCNGG 2 cut(s) 705, 770
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 2 cut(s) 705, 770
MvnI CGCG 5 cut(s) 51, 332, 446, 474, 521
MwoI GCNNNNNNNGC 8 cut(s) 60, 271, 280, 307, 316, 480, 529, 770
NaeI GCCGGC 1 cut(s) 577
NcoI CCATGG 3 cut(s) 252, 486, 785
NdeII GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 4 cut(s) 256, 340, 490, 789
NlaIV GGNNCC 3 cut(s) 318, 470, 782
NmeAIII GCCGAG 3 cut(s) 71, 121, 579
NspV TTCGAA 2 cut(s) 36, 231
PaeR7I CTCGAG 4 cut(s) 161, 260, 350, 424
PagI TCATGA 1 cut(s) 336
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 267, 294, 707
PdiI GCCGGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 607
PkrI GCNGC 8 cut(s) 50, 53, 303, 328, 331, 345, 348, 482
PleI GAGTC 5 cut(s) 83, 236, 416, 634, 750
PpsI GAGTC 5 cut(s) 83, 236, 416, 634, 750
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 703, 768
PspGI CCWGG 2 cut(s) 703, 768
PspN4I GGNNCC 3 cut(s) 318, 470, 782
PspPI GGNCC 2 cut(s) 130, 468
PspXI VCTCGAGB 2 cut(s) 260, 350
PstI CTGCAG 1 cut(s) 740
PsuI RGATCY 3 cut(s) 639, 715, 789
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 512, 590
RsaNI GTAC 2 cut(s) 511, 589
SacI GAGCTC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 52
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 8 cut(s) 49, 52, 302, 327, 330, 344, 347, 481
Sau3AI GATC 8 cut(s) 114, 333, 558, 639, 692, 715, 732, 789
Sau96I GGNCC 2 cut(s) 130, 468
SchI GAGTC 5 cut(s) 83, 236, 416, 635, 750
ScrFI CCNGG 2 cut(s) 705, 770
SduI GDGCHC 5 cut(s) 174, 261, 267, 276, 321
SetI ASST 8 cut(s) 219, 228, 267, 348, 444, 519, 531, 567
SfaNI GCATC 3 cut(s) 72, 208, 303
SfcI CTRYAG 1 cut(s) 736
Sfr274I CTCGAG 4 cut(s) 161, 260, 350, 424
Sfr303I CCGCGG 1 cut(s) 52
SfuI TTCGAA 2 cut(s) 36, 231
SgrAI CRCCGGYG 1 cut(s) 575
SgrBI CCGCGG 1 cut(s) 52
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 4 cut(s) 161, 260, 350, 424
SmlI CTYRAG 6 cut(s) 161, 212, 260, 350, 424, 793
SmoI CTYRAG 6 cut(s) 161, 212, 260, 350, 424, 793
Sse9I AATT 3 cut(s) 433, 664, 816
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 703, 768
StyI CCWWGG 3 cut(s) 252, 486, 785
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 3 cut(s) 228, 519, 567
TasI AATT 3 cut(s) 433, 664, 816
TatI WGTACW 1 cut(s) 588
TauI GCSGC 4 cut(s) 51, 54, 329, 332
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TseI GCWGC 4 cut(s) 301, 343, 346, 480
TspDTI ATGAA 3 cut(s) 353, 377, 567
TspGWI ACGGA 2 cut(s) 603, 650
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 664
XhoI CTCGAG 4 cut(s) 161, 260, 350, 424
XmnI GAANNNNTTC 1 cut(s) 686
ZraI GACGTC 2 cut(s) 226, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.