FvH4_6g08930
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5293176 .. 5294357
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08930.t1

Sequence Viewer

Length: 828 bp
ATGTACAACACACTCAAAGACAGCTACCAACTCTTCGAAGAAATCGGCCGCGGCCGATTCGGCACCATCCTCCGCGCCTTCTGCCCCATCTCCGCCGAGTCCGTCGCCGTCAAGATCATCGACAAAACCCTCCTCACCGACGACACCGACCGTGCATGTGTTGAAAAAGAACCCAAGATCATGACCCTCTTGCCTCCCCACCCCAACATTCTCAAACTCCACAACGTCATCGAAACAGAGGACTCCATGGCCTTGGTGCTCGAGCTCTGCGAACCCGAAACGCTCCACGACCGGATCGCCAACCAGCCGTTGCCGGAGCCGGAAGCTGCCAGTCTTATCAAACAGCTATTGGGAGCTGTTGATCACTGCCACAGAGTTGGTGTGGTTCACAGGGACCTGAAGCCGGAGAATGTTCTGTTTGATTCAAGAAACAATATGAAGCTGGCGGATTTTGGGTCGGCGGAGAGGTGTTCCGGTGAGGGATGGTCCATGGAAGATGTGGTGGGGACGCCGTACTATGTGGCGCCGGAGGTGTTGATGGGGAGGTTGTACAATGAGAAGGTGGATGTGTGGAGTGCAGGGGTGATGTTGTATATAATGTTGGGTGGGAATCCTCCTTTTTACGGCGAAACGGCGACGGAAATCTTTGAGGCGGTTTTGAGAGGGAATCTGAGGTTCCCGCCGAAGGTTTTCAAGGGAGTTTCGCCGGCGGCGAAGGATCTGCTGAGGAAGATGATGTGTAGAGATGTTTCCAGGAGACTATCTGCAGAGGAAGCACTTAGACACCCATGGATCTTGAGTGGTGGAGAAGCAAATCCAATGGTCTGA

Protein Analysis

276

Amino Acids

30.76

Weight (kDa)

5.47

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 265 3e-70 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 258 1.1e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 523
AccII CGCG 2 cut(s) 51, 75
AciI CCGC 9 cut(s) 49, 51, 73, 93, 446, 461, 653, 680, 710
AclWI GGATC 3 cut(s) 302, 726, 800
AcoI YGGCCR 2 cut(s) 46, 52
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 2 cut(s) 509, 524
AfaI GTAC 3 cut(s) 5, 515, 551
AfiI CCNNNNNNNGG 3 cut(s) 403, 623, 685
AgsI TTSAA 3 cut(s) 164, 426, 694
AjnI CCWGG 1 cut(s) 752
AluBI AGCT 6 cut(s) 24, 265, 326, 346, 356, 442
AluI AGCT 6 cut(s) 24, 265, 326, 346, 356, 442
Alw21I GWGCWC 2 cut(s) 261, 267
Alw26I GTCTC 1 cut(s) 751
AlwI GGATC 3 cut(s) 302, 726, 800
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 3 cut(s) 46, 52, 249
ApeKI GCWGC 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 2 cut(s) 77, 526
AspS9I GGNCC 2 cut(s) 394, 486
AsuHPI GGTGA 3 cut(s) 127, 488, 595
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 394, 486
BanI GGYRCC 2 cut(s) 62, 523
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 261, 267
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 1 cut(s) 313
BccI CCATC 4 cut(s) 74, 95, 477, 532
BceAI ACGGC 5 cut(s) 92, 292, 496, 640, 648
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 1 cut(s) 754
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 751
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 4 cut(s) 49, 52, 327, 711
BlsI GCNGC 4 cut(s) 50, 53, 328, 712
Bme1390I CCNGG 1 cut(s) 754
Bme18I GGWCC 2 cut(s) 394, 486
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 394, 486
BmiI GGNNCC 5 cut(s) 64, 318, 395, 525, 677
BmrFI CCNGG 1 cut(s) 754
Bpu10I CCTNAGC 1 cut(s) 725
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 817
BsaHI GRCGYC 2 cut(s) 509, 524
BsaJI CCNNGG 5 cut(s) 49, 246, 252, 489, 788
BsaWI WCCGGW 2 cut(s) 291, 473
Bsc4I CCNNNNNNNGG 3 cut(s) 403, 623, 685
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 754
BseDI CCNNGG 5 cut(s) 49, 246, 252, 489, 788
BseGI GGATG 3 cut(s) 66, 488, 571
BseLI CCNNNNNNNGG 3 cut(s) 403, 623, 685
BseMII CTCAG 2 cut(s) 662, 716
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 122
BseX3I CGGCCG 2 cut(s) 46, 52
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 2 cut(s) 51, 75
Bsh1285I CGRYCG 4 cut(s) 49, 55, 151, 292
BshFI GGCC 3 cut(s) 48, 54, 251
BshNI GGYRCC 2 cut(s) 62, 523
BsiEI CGRYCG 4 cut(s) 49, 55, 151, 292
BsiHKAI GWGCWC 2 cut(s) 261, 267
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 7 cut(s) 292, 314, 320, 404, 474, 527, 707
BslFI GGGAC 2 cut(s) 407, 520
BslI CCNNNNNNNGG 3 cut(s) 403, 623, 685
BsmAI GTCTC 1 cut(s) 751
BsmFI GGGAC 2 cut(s) 407, 520
BsnI GGCC 3 cut(s) 48, 54, 251
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 261, 267
Bsp1407I TGTACA 2 cut(s) 3, 549
Bsp143I GATC 6 cut(s) 114, 177, 294, 361, 718, 792
Bsp19I CCATGG 3 cut(s) 246, 489, 788
BspACI CCGC 9 cut(s) 49, 51, 73, 93, 446, 461, 653, 680, 710
BspANI GGCC 3 cut(s) 48, 54, 251
BspCNI CTCAG 2 cut(s) 663, 717
BspFNI CGCG 2 cut(s) 51, 75
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 5 cut(s) 64, 318, 395, 525, 677
BspMAI CTGCAG 1 cut(s) 769
BspPI GGATC 3 cut(s) 302, 726, 800
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 62, 523
BsrFI RCCGGY 1 cut(s) 706
BsrGI TGTACA 2 cut(s) 3, 549
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 5 cut(s) 49, 246, 252, 489, 788
BssMI GATC 6 cut(s) 114, 177, 294, 361, 718, 792
BssNI GRCGYC 2 cut(s) 509, 524
BssT1I CCWWGG 4 cut(s) 246, 252, 489, 788
Bst2UI CCWGG 1 cut(s) 754
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 509, 524
BstAUI TGTACA 2 cut(s) 3, 549
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 444, 708
BstDEI CTNAG 3 cut(s) 671, 725, 779
BstDSI CCRYGG 4 cut(s) 49, 246, 489, 788
BstF5I GGATG 3 cut(s) 66, 488, 571
BstFNI CGCG 2 cut(s) 51, 75
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 77, 526
BstKTI GATC 6 cut(s) 117, 180, 297, 364, 721, 795
BstMAI GTCTC 1 cut(s) 751
BstMBI GATC 6 cut(s) 114, 177, 294, 361, 718, 792
BstMCI CGRYCG 4 cut(s) 49, 55, 151, 292
BstMWI GCNNNNNNNGC 3 cut(s) 60, 81, 773
BstNI CCWGG 1 cut(s) 754
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 752
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 2 cut(s) 51, 75
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 2 cut(s) 718, 792
BstXI CCANNNNNNTGG 2 cut(s) 253, 377
BstYI RGATCY 2 cut(s) 718, 792
BstZI CGGCCG 2 cut(s) 46, 52
BsuRI GGCC 3 cut(s) 48, 54, 251
BtgI CCRYGG 4 cut(s) 49, 246, 489, 788
BtsCI GGATG 3 cut(s) 66, 488, 571
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 444, 708
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 77, 526
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 2 cut(s) 394, 486
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 1 cut(s) 517
Csp6I GTAC 3 cut(s) 4, 514, 550
CviAII CATG 5 cut(s) 156, 181, 247, 490, 789
CviQI GTAC 3 cut(s) 4, 514, 550
DdeI CTNAG 3 cut(s) 671, 725, 779
DinI GGCGCC 1 cut(s) 525
DpnI GATC 6 cut(s) 116, 179, 296, 363, 720, 794
DpnII GATC 6 cut(s) 114, 177, 294, 361, 718, 792
EaeI YGGCCR 2 cut(s) 46, 52
EagI CGGCCG 2 cut(s) 46, 52
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 3 cut(s) 82, 461, 476
Ecl136II GAGCTC 1 cut(s) 265
EclXI CGGCCG 2 cut(s) 46, 52
Eco130I CCWWGG 4 cut(s) 246, 252, 489, 788
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 394, 486
Eco52I CGGCCG 2 cut(s) 46, 52
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 752
EcoT14I CCWWGG 4 cut(s) 246, 252, 489, 788
EcoT38I GRGCYC 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
ErhI CCWWGG 4 cut(s) 246, 252, 489, 788
FaeI CATG 5 cut(s) 159, 184, 250, 493, 792
FaiI YATR 9 cut(s) 157, 182, 248, 437, 491, 519, 594, 596, 790
FaqI GGGAC 2 cut(s) 407, 520
FatI CATG 5 cut(s) 155, 180, 246, 489, 788
FauI CCCGC 1 cut(s) 687
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 4 cut(s) 49, 52, 327, 711
FokI GGATG 3 cut(s) 53, 495, 578
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 49, 52, 327, 711
GlaI GCGC 2 cut(s) 76, 525
GluI GCNGC 4 cut(s) 49, 52, 327, 711
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 3 cut(s) 48, 54, 251
HapII CCGG 7 cut(s) 292, 314, 320, 404, 474, 527, 707
HgaI GACGC 1 cut(s) 517
HhaI GCGC 2 cut(s) 77, 526
Hin1I GRCGYC 2 cut(s) 509, 524
Hin1II CATG 5 cut(s) 159, 184, 250, 493, 792
Hin6I GCGC 2 cut(s) 75, 524
HinP1I GCGC 2 cut(s) 75, 524
HinfI GANTC 6 cut(s) 57, 98, 242, 422, 610, 667
HpaII CCGG 7 cut(s) 292, 314, 320, 404, 474, 527, 707
HphI GGTGA 3 cut(s) 127, 488, 595
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 672, 827
Hpy188III TCNNGA 4 cut(s) 112, 181, 426, 796
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 107, 143, 640
HpyAV CCTTC 4 cut(s) 88, 553, 679, 709
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 155, 578, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 81, 773
HpyF3I CTNAG 3 cut(s) 671, 725, 779
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 2 cut(s) 509, 524
Hsp92II CATG 5 cut(s) 159, 184, 250, 493, 792
HspAI GCGC 2 cut(s) 75, 524
KasI GGCGCC 1 cut(s) 523
KroI GCCGGC 1 cut(s) 706
KroNI GCCGGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 361
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 6 cut(s) 114, 177, 294, 361, 718, 792
LmnI GCTCC 3 cut(s) 288, 316, 353
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 1 cut(s) 225
MalI GATC 6 cut(s) 116, 179, 296, 363, 720, 794
MboI GATC 6 cut(s) 114, 177, 294, 361, 718, 792
MboII GAAGA 4 cut(s) 25, 50, 506, 742
MflI RGATCY 2 cut(s) 718, 792
MhlI GDGCHC 2 cut(s) 261, 267
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 2 cut(s) 107, 236
MreI CGCCGGCG 1 cut(s) 706
MroNI GCCGGC 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 7 cut(s) 292, 314, 320, 404, 474, 527, 707
MspR9I CCNGG 1 cut(s) 754
MvaI CCWGG 1 cut(s) 754
MvnI CGCG 2 cut(s) 51, 75
MwoI GCNNNNNNNGC 3 cut(s) 60, 81, 773
NaeI GCCGGC 1 cut(s) 708
NarI GGCGCC 1 cut(s) 524
NcoI CCATGG 3 cut(s) 246, 489, 788
NdeII GATC 6 cut(s) 114, 177, 294, 361, 718, 792
NgoMIV GCCGGC 1 cut(s) 706
NlaIII CATG 5 cut(s) 159, 184, 250, 493, 792
NlaIV GGNNCC 5 cut(s) 64, 318, 395, 525, 677
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 710
PdiI GCCGGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 57, 422, 610, 667
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 4 cut(s) 50, 53, 328, 712
PleI GAGTC 2 cut(s) 106, 236
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 2 cut(s) 106, 236
PpuMI RGGWCCY 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 752
PspGI CCWGG 1 cut(s) 752
PspN4I GGNNCC 5 cut(s) 64, 318, 395, 525, 677
PspPI GGNCC 2 cut(s) 394, 486
PspPPI RGGWCCY 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 260
PstI CTGCAG 1 cut(s) 769
PsuI RGATCY 2 cut(s) 718, 792
RsaI GTAC 3 cut(s) 5, 515, 551
RsaNI GTAC 3 cut(s) 4, 514, 550
SacI GAGCTC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 52
SatI GCNGC 4 cut(s) 49, 52, 327, 711
Sau3AI GATC 6 cut(s) 114, 177, 294, 361, 718, 792
Sau96I GGNCC 2 cut(s) 394, 486
SchI GAGTC 2 cut(s) 107, 236
ScrFI CCNGG 1 cut(s) 754
SduI GDGCHC 2 cut(s) 261, 267
SfcI CTRYAG 1 cut(s) 765
SfoI GGCGCC 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 260
Sfr303I CCGCGG 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 706
SgrBI CCGCGG 1 cut(s) 52
SinI GGWCC 2 cut(s) 394, 486
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 260, 796
SmoI CTYRAG 2 cut(s) 260, 796
SsiI CCGC 9 cut(s) 49, 51, 73, 93, 446, 461, 653, 680, 710
SspDI GGCGCC 1 cut(s) 523
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 752
StyI CCWWGG 4 cut(s) 246, 252, 489, 788
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 36, 120, 231, 261
TatI WGTACW 2 cut(s) 3, 549
TauI GCSGC 3 cut(s) 51, 54, 713
TfiI GAWTC 4 cut(s) 57, 422, 610, 667
TscAI CASTG 1 cut(s) 371
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 452
TspGWI ACGGA 2 cut(s) 91, 653
TspRI CASTG 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 394, 486
XceI RCATGY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.