Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004122

Physical Location & Seq

Genomic Coordinates Reverse (-)

6250703 .. 6251484

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGTGAGCAACTCAAACGAGACTACCAAATCTGCGACGAGGTCGGCCGGGGTCGATTCGGCGTCGTTTTCAAGGCCGTCAAGAACGGCGACGTCTTCGCCGTCAAGTCCATCGACAAGCGCCTGGCCTCCGGCGACTCCCTCGACGCTCAGTGTCTTTCAACCGAGCCGAAGATCCTCCGCCTGGTGGCTCCCCACCCCAACGTGATCGGCCTCCACGGGCTTTACGAGGACGAGGACCATCTGCACATGGTTCTCGACATGTGTGACGCGCCGGATCTGTTCCGACGCATCACCCTGAGGTTATTCGCTGAGCCGGAGGCCGCCTCGGTAATGTCGCAGCTCATGCAGGCTGTGGCGCACTGTCACCGGCTGGGCGTGGCCCACCGCGATATCAAGCCGGATAACGTGCTGTTCGACGGCTGGGACCGGCTCCGCCTCGCTGACTTTGGATCGGGGGAGACGTTCGGCGAGGGGGAGCTGATGAGCGGCGTGGTCGGGACGCCGTACTACGTGGCGCCGGAGGTCCTTGCCGGGAGGGAGTACGGGGAGAAGGTGGACGTCTGGAGCGCCGGCTCTGCGGCGGAGATCTTTGAGGCTGTGCGGAGGGCGAATTTGAGATTTCCGGCGAGGGTTTTCCACTCTGTCTCGCCGTCTGTGAAGGAGTTGTTGAGGAGGATGCTCTGTAAGGACGTTTCTAGAAGATTCTCGGCTGAGCAAGTCCTCAGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009636 GO:0009931 GO:0009987 GO:0010033 GO:0010243 GO:0010857 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0046777 GO:0046898 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060992 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

244

Amino Acids

27.23

Weight (kDa)

6.25

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 243	6.9e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 198	2.2e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08650 AT1G08650 AT3G04530
fragaria_vesca	FvH4_4g03560 FvH4_6g02090 FvH4_6g08930
malus_domestica	MD04G1229200.v1.1 MD16G1217500.v1.1
prunus_persica	Prupe.1G038800_v2.0.a1 Prupe.6G349100_v2.0.a1
pyrus_communis	pycom12g22590
rosa_chinensis	RchiOBHm_Chr3g0449921 RchiOBHm_Chr4g0392911
rosa_laevigata	RLG00000009782 RLG00000025775
rosa_multiflora	Rmu_co8401231.1_g000001 Rmu_sc0002646.1_g000001 Rmu_sc0005524.1_g000005 Rmu_sc0008339.1_g000031
rosa_roxburghii	Rroxscaffold_5G00338030 Rroxscaffold_6G00427720
rosa_rugosa	Rorug02G0624000 Rorug03G0341100
rosa_samantha	Rh3AG023100 Rh3BG023700 Rh3CG022800 Rh3DG023600 Rh4AG044800 Rh4BG040600 Rh4CG048200 Rh4DG042400
rosa_wichuraiana	Rw3G001850 Rw4G003510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	96, 564
AccB1I	GGYRCC	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	489
AccII	CGCG	2 cut(s)	272, 390
AciI	CCGC	8 cut(s)	181, 324, 388, 436, 489, 581, 584, 604
AclWI	GGATC	3 cut(s)	169, 285, 460
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	613
AcyI	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
AfaI	GTAC	2 cut(s)	509, 545
AfiI	CCNNNNNNNGG	2 cut(s)	184, 187
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	73, 162
AjnI	CCWGG	2 cut(s)	123, 183
AluBI	AGCT	2 cut(s)	343, 481
AluI	AGCT	2 cut(s)	343, 481
Alw26I	GTCTC	3 cut(s)	15, 455, 652
AlwI	GGATC	3 cut(s)	169, 285, 460
AoxI	GGCC	6 cut(s)	46, 75, 126, 211, 321, 381
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	5 cut(s)	123, 274, 361, 520, 572
AspS9I	GGNCC	4 cut(s)	238, 382, 427, 526
AsuC2I	CCSGG	2 cut(s)	50, 535
AsuHPI	GGTGA	2 cut(s)	286, 359
AvaII	GGWCC	3 cut(s)	238, 427, 526
AxyI	CCTNAGG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	119, 249
BceAI	ACGGC	6 cut(s)	62, 86, 103, 436, 490, 637
BciT130I	CCWGG	2 cut(s)	125, 185
BcnI	CCSGG	2 cut(s)	50, 535
BcoDI	GTCTC	3 cut(s)	15, 455, 652
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	3 cut(s)	124, 521, 573
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	4 cut(s)	324, 341, 490, 582
BlpI	GCTNAGC	2 cut(s)	312, 714
BlsI	GCNGC	4 cut(s)	325, 342, 491, 583
Bme1390I	CCNGG	4 cut(s)	50, 125, 185, 535
Bme18I	GGWCC	3 cut(s)	238, 427, 526
BmgT120I	GGNCC	4 cut(s)	238, 382, 427, 526
BmiI	GGNNCC	4 cut(s)	192, 428, 434, 519
BmrFI	CCNGG	4 cut(s)	50, 125, 185, 535
BmsI	GCATC	2 cut(s)	300, 669
BpiI	GAAGAC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	586
Bpu1102I	GCTNAGC	2 cut(s)	312, 714
BpuMI	CCSGG	2 cut(s)	50, 535
BsaAI	YACGTR	1 cut(s)	514
BsaHI	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
BsaJI	CCNNGG	3 cut(s)	49, 217, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 187
Bse118I	RCCGGY	3 cut(s)	369, 429, 572
Bse21I	CCTNAGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	125, 185
BseDI	CCNNGG	3 cut(s)	49, 217, 327
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	184, 187
BseMII	CTCAG	4 cut(s)	164, 290, 303, 705
BseRI	GAGGAG	1 cut(s)	688
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	2 cut(s)	373, 423
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	272, 390
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	6 cut(s)	48, 77, 128, 213, 323, 383
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	440, 514
BslI	CCNNNNNNNGG	2 cut(s)	184, 187
BsmAI	GTCTC	3 cut(s)	15, 455, 652
BsmBI	CGTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	440, 514
BsnI	GGCC	6 cut(s)	48, 77, 128, 213, 323, 383
Bsp143I	GATC	5 cut(s)	174, 207, 277, 452, 588
Bsp1720I	GCTNAGC	2 cut(s)	312, 714
BspACI	CCGC	8 cut(s)	181, 324, 388, 436, 489, 581, 584, 604
BspANI	GGCC	6 cut(s)	48, 77, 128, 213, 323, 383
BspCNI	CTCAG	4 cut(s)	163, 291, 304, 706
BspFNI	CGCG	2 cut(s)	272, 390
BspLI	GGNNCC	4 cut(s)	192, 428, 434, 519
BspPI	GGATC	3 cut(s)	169, 285, 460
BspT107I	GGYRCC	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	489
BsrFI	RCCGGY	3 cut(s)	369, 429, 572
BssAI	RCCGGY	3 cut(s)	369, 429, 572
BssECI	CCNNGG	3 cut(s)	49, 217, 327
BssMI	GATC	5 cut(s)	174, 207, 277, 452, 588
BssNI	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
Bst2UI	CCWGG	2 cut(s)	125, 185
Bst4CI	ACNGT	1 cut(s)	365
BstACI	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	351, 574
BstDEI	CTNAG	5 cut(s)	150, 299, 312, 714, 725
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	684
BstFNI	CGCG	2 cut(s)	272, 390
BstH2I	RGCGCY	3 cut(s)	124, 521, 573
BstHHI	GCGC	5 cut(s)	123, 274, 361, 520, 572
BstKTI	GATC	5 cut(s)	177, 210, 280, 455, 591
BstMAI	GTCTC	3 cut(s)	15, 455, 652
BstMBI	GATC	5 cut(s)	174, 207, 277, 452, 588
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 578
BstNI	CCWGG	2 cut(s)	125, 185
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	4 cut(s)	48, 123, 183, 533
BstUI	CGCG	2 cut(s)	272, 390
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	3 cut(s)	174, 277, 588
BstYI	RGATCY	3 cut(s)	174, 277, 588
BstZI	CGGCCG	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	6 cut(s)	48, 77, 128, 213, 323, 383
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	158, 361
Cac8I	GCNNGC	2 cut(s)	351, 574
CfoI	GCGC	5 cut(s)	123, 274, 361, 520, 572
Cfr10I	RCCGGY	3 cut(s)	369, 429, 572
Cfr13I	GGNCC	4 cut(s)	238, 382, 427, 526
CseI	GACGC	5 cut(s)	52, 155, 278, 297, 511
Csp6I	GTAC	2 cut(s)	508, 544
CviAII	CATG	3 cut(s)	250, 262, 346
CviQI	GTAC	2 cut(s)	508, 544
DdeI	CTNAG	5 cut(s)	150, 299, 312, 714, 725
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	5 cut(s)	176, 209, 279, 454, 590
DpnII	GATC	5 cut(s)	174, 207, 277, 452, 588
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EciI	GGCGGA	3 cut(s)	170, 425, 599
EclXI	CGGCCG	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	3 cut(s)	238, 427, 526
Eco52I	CGGCCG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	123, 183
EcoRV	GATATC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	3 cut(s)	253, 265, 349
FaiI	YATR	3 cut(s)	251, 263, 347
FaqI	GGGAC	2 cut(s)	440, 514
FatI	CATG	3 cut(s)	249, 261, 345
Fnu4HI	GCNGC	4 cut(s)	324, 341, 490, 582
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	4 cut(s)	324, 341, 490, 582
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	5 cut(s)	122, 273, 360, 519, 571
GluI	GCNGC	4 cut(s)	324, 341, 490, 582
GsaI	CCCAGC	2 cut(s)	377, 427
GsuI	CTGGAG	1 cut(s)	586
HaeII	RGCGCY	3 cut(s)	124, 521, 573
HaeIII	GGCC	6 cut(s)	48, 77, 128, 213, 323, 383
HgaI	GACGC	5 cut(s)	52, 155, 278, 297, 511
HhaI	GCGC	5 cut(s)	123, 274, 361, 520, 572
Hin1I	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
Hin1II	CATG	3 cut(s)	253, 265, 349
Hin6I	GCGC	5 cut(s)	121, 272, 359, 518, 570
HinP1I	GCGC	5 cut(s)	121, 272, 359, 518, 570
HinfI	GANTC	3 cut(s)	57, 137, 705
HphI	GGTGA	2 cut(s)	286, 359
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	5 cut(s)	82, 257, 499, 565, 699
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	6 cut(s)	41, 68, 95, 149, 291, 422
HpyAV	CCTTC	2 cut(s)	547, 655
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	7 cut(s)	93, 204, 408, 464, 513, 561, 693
HpyCH4V	TGCA	2 cut(s)	247, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 578
HpyF3I	CTNAG	5 cut(s)	150, 299, 312, 714, 725
HpySE526I	ACGT	7 cut(s)	93, 204, 408, 464, 513, 561, 693
Hsp92I	GRCGYC	5 cut(s)	63, 93, 503, 518, 561
Hsp92II	CATG	3 cut(s)	253, 265, 349
HspAI	GCGC	5 cut(s)	121, 272, 359, 518, 570
KasI	GGCGCC	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	572
KroNI	GCCGGC	1 cut(s)	574
Kzo9I	GATC	5 cut(s)	174, 207, 277, 452, 588
LmnI	GCTCC	4 cut(s)	196, 438, 478, 567
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	300, 669
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	7 cut(s)	93, 204, 408, 464, 513, 561, 693
MaeIII	GTNAC	2 cut(s)	266, 365
MalI	GATC	5 cut(s)	176, 209, 279, 454, 590
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	5 cut(s)	174, 207, 277, 452, 588
MboII	GAAGA	3 cut(s)	88, 184, 714
MflI	RGATCY	3 cut(s)	174, 277, 588
MluCI	AATT	1 cut(s)	613
Mly113I	GGCGCC	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	572
MspR9I	CCNGG	4 cut(s)	50, 125, 185, 535
MvaI	CCWGG	2 cut(s)	125, 185
MvnI	CGCG	2 cut(s)	272, 390
MwoI	GCNNNNNNNGC	2 cut(s)	346, 578
NaeI	GCCGGC	1 cut(s)	574
NarI	GGCGCC	1 cut(s)	518
NciI	CCSGG	2 cut(s)	50, 535
NdeII	GATC	5 cut(s)	174, 207, 277, 452, 588
NgoMIV	GCCGGC	1 cut(s)	572
NlaIII	CATG	3 cut(s)	253, 265, 349
NlaIV	GGNNCC	4 cut(s)	192, 428, 434, 519
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	2 cut(s)	266, 365
NspI	RCATGY	1 cut(s)	265
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	4 cut(s)	99, 225, 414, 461
PdiI	GCCGGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	57, 705
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	325, 342, 491, 583
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	123, 183
PspFI	CCCAGC	2 cut(s)	373, 423
PspGI	CCWGG	2 cut(s)	123, 183
PspN4I	GGNNCC	4 cut(s)	192, 428, 434, 519
PspPI	GGNCC	4 cut(s)	238, 382, 427, 526
PspPPI	RGGWCCY	1 cut(s)	526
PsuI	RGATCY	3 cut(s)	174, 277, 588
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	509, 545
RsaNI	GTAC	2 cut(s)	508, 544
SatI	GCNGC	4 cut(s)	324, 341, 490, 582
Sau3AI	GATC	5 cut(s)	174, 207, 277, 452, 588
Sau96I	GGNCC	4 cut(s)	238, 382, 427, 526
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	50, 125, 185, 535
SfaNI	GCATC	2 cut(s)	300, 669
SfoI	GGCGCC	1 cut(s)	519
SinI	GGWCC	3 cut(s)	238, 427, 526
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	8 cut(s)	181, 324, 388, 436, 489, 581, 584, 604
SspDI	GGCGCC	1 cut(s)	517
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	4 cut(s)	48, 123, 183, 533
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	7 cut(s)	96, 207, 411, 467, 516, 564, 696
TaqI	TCGA	5 cut(s)	55, 114, 144, 258, 417
TasI	AATT	1 cut(s)	613
TauI	GCSGC	3 cut(s)	326, 492, 584
TfiI	GAWTC	2 cut(s)	57, 705
TscAI	CASTG	2 cut(s)	158, 368
TseFI	GTSAC	2 cut(s)	266, 365
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	266, 365
TspRI	CASTG	2 cut(s)	158, 368
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	3 cut(s)	238, 427, 526
XapI	RAATTY	1 cut(s)	613
XbaI	TCTAGA	1 cut(s)	698
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	2 cut(s)	94, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.