Rorug03G0341300

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006855
Physical Location & Seq
Reverse (-)
40888475 .. 40891241
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0341300.1

Sequence Viewer

Length: 822 bp
ATGGAAGATCATCAAGGCCAAGGCGGAGGCCAAGAGGCCAAAGAGCCAAACAGTCCAAACAGTAATGGCTCCTCAGAGAGAAGTGAACCAGTAAGGTCAAGGTGGATTCCGAAACCAGAGCAAATCCTAATTCTGGAGTCTATTTTCAATAGTGGAATGGTAAATCCTCCGAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGCCAACGGCAGTTGCAAGCGAGCTTTGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTACTACTAGTTTCAGTGCTCCACCACCACCACCAGCTATGGCTTTTGGAGCTTCTACACCTTCCACTTTTGGTTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTGCTATGGCAGCAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATCGAGCACAGTTCCTCCGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCTGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCAATGTTTGGCACTCAAGATGTGTTGTTGATTCATTCCTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTTTCCAGACCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

273

Amino Acids

29.49

Weight (kDa)

5.69

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 32 - 92 2.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 277
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 148
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 784, 801
AluBI AGCT 7 cut(s) 300, 326, 363, 404, 419, 777, 795
AluI AGCT 7 cut(s) 300, 326, 363, 404, 419, 777, 795
Alw21I GWGCWC 2 cut(s) 388, 552
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 16, 28, 36, 674
ApeKI GCWGC 5 cut(s) 320, 323, 485, 494, 781
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 581, 674
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 1 cut(s) 581
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
Bbv12I GWGCWC 2 cut(s) 388, 552
BbvI GCAGC 5 cut(s) 332, 335, 472, 506, 793
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 2 cut(s) 786, 803
BclI TGATCA 2 cut(s) 328, 502
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 203, 366, 375
BisI GCNGC 6 cut(s) 277, 321, 324, 486, 495, 782
BlsI GCNGC 6 cut(s) 278, 322, 325, 487, 496, 783
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 786, 803
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 581, 674
BmiI GGNNCC 4 cut(s) 70, 248, 314, 654
BmrFI CCNGG 2 cut(s) 786, 803
BmsI GCATC 2 cut(s) 217, 580
BpmI CTGGAG 2 cut(s) 155, 753
BpuEI CTTGAG 2 cut(s) 580, 690
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 2 cut(s) 521, 560
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 89, 248
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 2 cut(s) 786, 803
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 89, 248
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 5 cut(s) 332, 335, 472, 506, 793
BshFI GGCC 4 cut(s) 18, 30, 38, 676
BsiHKAI GWGCWC 2 cut(s) 388, 552
BsiSI CCGG 2 cut(s) 522, 561
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 4 cut(s) 18, 30, 38, 676
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 388, 552
Bsp143I GATC 5 cut(s) 7, 266, 328, 451, 502
BspACI CCGC 2 cut(s) 24, 277
BspANI GGCC 4 cut(s) 18, 30, 38, 676
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 4 cut(s) 70, 248, 314, 654
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 2 cut(s) 89, 248
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 5 cut(s) 7, 266, 328, 451, 502
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 786, 803
Bst4CI ACNGT 6 cut(s) 53, 62, 184, 261, 554, 637
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 294, 298, 779
BstDEI CTNAG 2 cut(s) 73, 766
BstKTI GATC 5 cut(s) 10, 269, 331, 454, 505
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 5 cut(s) 7, 266, 328, 451, 502
BstMWI GCNNNNNNNGC 3 cut(s) 416, 491, 494
BstNI CCWGG 2 cut(s) 786, 803
BstSCI CCNGG 2 cut(s) 784, 801
BstV1I GCAGC 5 cut(s) 332, 335, 472, 506, 793
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 4 cut(s) 18, 30, 38, 676
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 294, 298, 779
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 581, 674
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 685
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 73, 766
DpnI GATC 5 cut(s) 9, 268, 330, 453, 504
DpnII GATC 5 cut(s) 7, 266, 328, 451, 502
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 784, 801
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 1 cut(s) 688
FaiI YATR 5 cut(s) 357, 407, 450, 491, 686
FatI CATG 1 cut(s) 684
FbaI TGATCA 2 cut(s) 328, 502
Fnu4HI GCNGC 6 cut(s) 277, 321, 324, 486, 495, 782
Fsp4HI GCNGC 6 cut(s) 277, 321, 324, 486, 495, 782
FspBI CTAG 3 cut(s) 203, 366, 375
GluI GCNGC 6 cut(s) 277, 321, 324, 486, 495, 782
GsuI CTGGAG 2 cut(s) 155, 753
HaeIII GGCC 4 cut(s) 18, 30, 38, 676
HapII CCGG 2 cut(s) 522, 561
Hin1II CATG 1 cut(s) 688
HinfI GANTC 5 cut(s) 106, 137, 464, 622, 721
HpaII CCGG 2 cut(s) 522, 561
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 5 cut(s) 76, 111, 171, 589, 627
Hpy188III TCNNGA 6 cut(s) 134, 264, 539, 707, 732, 810
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 261, 276
HpyAV CCTTC 2 cut(s) 438, 594
HpyCH4III ACNGT 6 cut(s) 53, 62, 184, 261, 554, 637
HpyCH4IV ACGT 2 cut(s) 234, 569
HpyCH4V TGCA 5 cut(s) 230, 292, 347, 604, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 491, 494
HpyF3I CTNAG 2 cut(s) 73, 766
HpySE526I ACGT 2 cut(s) 234, 569
Hsp92II CATG 1 cut(s) 688
Ksp22I TGATCA 2 cut(s) 328, 502
Kzo9I GATC 5 cut(s) 7, 266, 328, 451, 502
LmnI GCTCC 3 cut(s) 74, 391, 416
Lsp1109I GCAGC 5 cut(s) 332, 335, 472, 506, 793
LweI GCATC 2 cut(s) 217, 580
MaeI CTAG 3 cut(s) 203, 366, 375
MaeII ACGT 2 cut(s) 234, 569
MaeIII GTNAC 1 cut(s) 565
MalI GATC 5 cut(s) 9, 268, 330, 453, 504
MboI GATC 5 cut(s) 7, 266, 328, 451, 502
MboII GAAGA 5 cut(s) 17, 188, 459, 462, 468
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 388, 552
MluCI AATT 5 cut(s) 129, 209, 348, 445, 817
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 202, 680
MseI TTAA 2 cut(s) 645, 820
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 522, 561
MspR9I CCNGG 2 cut(s) 786, 803
MvaI CCWGG 2 cut(s) 786, 803
MwoI GCNNNNNNNGC 3 cut(s) 416, 491, 494
NdeII GATC 5 cut(s) 7, 266, 328, 451, 502
NlaIII CATG 1 cut(s) 688
NlaIV GGNNCC 4 cut(s) 70, 248, 314, 654
PfeI GAWTC 4 cut(s) 106, 464, 622, 721
PkrI GCNGC 6 cut(s) 278, 322, 325, 487, 496, 783
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 581
PshBI ATTAAT 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 784, 801
PspGI CCWGG 2 cut(s) 784, 801
PspN4I GGNNCC 4 cut(s) 70, 248, 314, 654
PspPI GGNCC 2 cut(s) 581, 674
PspPPI RGGWCCY 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 645, 820
SatI GCNGC 6 cut(s) 277, 321, 324, 486, 495, 782
Sau3AI GATC 5 cut(s) 7, 266, 328, 451, 502
Sau96I GGNCC 2 cut(s) 581, 674
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 786, 803
SduI GDGCHC 2 cut(s) 388, 552
SfaNI GCATC 2 cut(s) 217, 580
SinI GGWCC 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 595, 705
SmoI CTYRAG 2 cut(s) 595, 705
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 129, 209, 348, 445, 817
SsiI CCGC 2 cut(s) 24, 277
SspMI CTAG 3 cut(s) 203, 366, 375
StyD4I CCNGG 2 cut(s) 784, 801
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 6 cut(s) 53, 62, 184, 261, 554, 637
TaiI ACGT 2 cut(s) 237, 572
TaqI TCGA 1 cut(s) 546
TasI AATT 5 cut(s) 129, 209, 348, 445, 817
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 4 cut(s) 106, 464, 622, 721
Tru1I TTAA 2 cut(s) 645, 820
Tru9I TTAA 2 cut(s) 645, 820
TscAI CASTG 1 cut(s) 388
TseI GCWGC 5 cut(s) 320, 323, 485, 494, 781
TspDTI ATGAA 3 cut(s) 462, 701, 713
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 1 cut(s) 209
XspI CTAG 3 cut(s) 203, 366, 375
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.