MD13G1213600.v1.1

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0006855
Physical Location & Seq
Reverse (-)
20121868 .. 20126215
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1213600.v1.1.491

Sequence Viewer

Length: 1938 bp
ATGAGTGGCAATAAGACTATAGTTTGGTTTAGGAGGGACCTGAGGATTGAGGACAATCCTGCCTTAGCTGCTGCTGCTAGGGATGGTAGTGTTTTTCCTGTTTATATTTGGTGCCCCAAAGAGGAAGAGCAATTTTACCCAGGTCGAGTATCACGGTGGTGGCTGAAGCAGTCTCTTGCTCATTTGGACCAATCCCTGAAATCCCTTGGGGCAGAACTTGTTCTTATCAAAACTCAGAGTACTCTGGCTGCTCTCATCGAGTGCATTCAAGCCATTGGAGCTACCAAAGTAGTTTTCAACCATCTTTATGATCCCGTTTCACTTGTTGGTGATCACAACATCAAAGGAAAGCTGGTGGAGCTAGGCATTTCTGTGCAAAGCTTCAATGCAGATCTGTTGTATGAGCCATGGGAAGTATATGCTGGAAAAGGACAAGCTTATACAACTTTCGAGGTGTACTGGGATAAGTGTTTACACATACAACGGGAACTTGTGACACGTCTTCCTCCATGGAAATTGATTTCGGCAACAGGAACTGTAGCAAAATGTTCACTCGAGGAACTGGGTCTCGAAAATGAAACGGAAAAGTCTAGCAATGCCCTCCTAAGAAGAGCATGGTCTCCTGGTTGGAGCAATGCTGACAAGGCACTAAGTGAATTTTTCGAGTTGCACCTGCTTGACTACTCAAACAACAGGATGAAGGTTGGACAAAACTCCACATCACTTTTGTCCCCATATCTTCACTTCGGAGAACTGAGCATTAGGAAAGTTTTCCAATCAGCTCGAATGAAGCAGATACTGTGGGCAAAAGAAGGGAACTCTACTGGGGAAGAGAGTGTGACACTTTTTCTGAGGGCCATTGGGCTTAGAGAATACTCACGGTATCTATGTTTTAACTTCCCGTTCACTCATGAGAGACCACTGCTGAGCAACTTGAAGTTTTTTCCATGGCAAGCTGACCAAGCCAATTTTAAGGCTTGGAGACAAGGTCGGACCGGTTACCCTTTGGTTGATGCAGGAATGAGAGAGCTATGGGCAACTGGGTGGATACACAACAGGATAAGAGTGATCGTTTCAAGTTTTTCTGTGAAAGTGTTGCTTCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACGCTTATAGATGCCGATTTGGAAAGCGATATCCTTGGTTGGCAGTATATCTCTGGGAGTTTACCAGATGGCCATGAGCTTGAGCGTTTGGACAGTCCAGAGGTTCAGGGCTCAAAATTTGACCCAGAGGGTGAATATGTAAGGCATTGGCTGCCTGAGTTATCACGTTTGCCAACCGAGTGGATCCACCATCCTTGGGATGCACCTGATTCTGTGCTTAAAGTTTCAGGTGTAGAGTTTGGGTTTAACTATCCAAAACCTATCATTGAGATAGATTTGGCTAGAGAACGCTTGACGAGCGCCATATTCAAGATGTGGGAAATGGAAGCAGCAGCAAAGGCTGCAAGCTCAAACGGCACAGATGAAGTTGTTGTTGACAACTCCATCAGTGAAGATTTGCCCATCCCAAAGGTGATATTAAAGAAAACCTCTCCTTGCCCTACATACTCCTCTAATGATCAGAAGGTACCAACATGTCAAAATTCCAAGAATAATCAGTTTATTAGGAAGAGATCAAAATTTATGCAAGACGAAAGCCCACTCCCAGATAATCCGCACAATCCTAACGAAGCTGGGCCCTCGAGAACAAATGAAGACACGAGCTCTACTGCTGAATCTTCAATCTCTAAGAAGCAGACAACTAGCAGAAATTCATTTTCGGTTCCACAGTCATGTTCATCATCAGAAGGCAACCCCTTTATGGGGTGTGAATCTTCTGAGATGAAGCAGTCATGGCAAGAACAAAGTGATATGGAGCAGAGTTCAAGCAAAAATGGAGCCGTGGAAGATGAACACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

646

Amino Acids

73.28

Weight (kDa)

5.74

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 6 - 162 1.9e-40 DNA photolyase
FAD_binding_7 PF03441 283 - 480 5.9e-69 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 681
Acc65I GGTACC 1 cut(s) 1603
AccB1I GGYRCC 2 cut(s) 111, 1603
AciI CCGC 1 cut(s) 1691
AclWI GGATC 3 cut(s) 305, 1315, 1328
AcoI YGGCCR 1 cut(s) 1207
AcsI RAATTY 5 cut(s) 656, 1253, 1618, 1655, 1786
AcuI CTGAAG 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 3 cut(s) 241, 458, 1605
AfiI CCNNNNNNNGG 5 cut(s) 121, 1333, 1837, 1838, 1839
AflIII ACRYGT 2 cut(s) 497, 1610
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 8 cut(s) 269, 298, 385, 937, 1077, 1447, 1758, 1902
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 139, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 1742
Alw26I GTCTC 5 cut(s) 177, 572, 624, 910, 976
AlwI GGATC 3 cut(s) 305, 1315, 1328
AlwNI CAGNNNCTG 2 cut(s) 536, 799
Ama87I CYCGRG 2 cut(s) 554, 1717
AoxI GGCC 3 cut(s) 855, 1207, 1712
ApaI GGGCCC 1 cut(s) 1716
ApeKI GCWGC 8 cut(s) 68, 71, 74, 248, 1288, 1466, 1469, 1478
ApoI RAATTY 5 cut(s) 656, 1253, 1618, 1655, 1786
AsiGI ACCGGT 1 cut(s) 995
Asp700I GAANNNNTTC 3 cut(s) 219, 770, 1127
Asp718I GGTACC 1 cut(s) 1603
AspLEI GCGC 1 cut(s) 1439
AspS9I GGNCC 6 cut(s) 37, 187, 855, 993, 1712, 1713
AsuHPI GGTGA 3 cut(s) 341, 1280, 1561
AvaI CYCGRG 2 cut(s) 554, 1717
AvaII GGWCC 3 cut(s) 37, 187, 993
AxyI CCTNAGG 1 cut(s) 41
BaeGI GKGCMC 2 cut(s) 116, 1716
BalI TGGCCA 1 cut(s) 1209
BamHI GGATCC 1 cut(s) 1320
BanI GGYRCC 2 cut(s) 111, 1603
BanII GRGCYC 3 cut(s) 1250, 1716, 1742
BauI CACGAG 1 cut(s) 1735
BbsI GAAGAC 2 cut(s) 494, 1737
Bbv12I GWGCWC 1 cut(s) 1742
BbvI GCAGC 8 cut(s) 55, 58, 61, 235, 1275, 1465, 1478, 1481
BccI CCATC 7 cut(s) 77, 309, 1107, 1199, 1335, 1529, 1547
BceAI ACGGC 2 cut(s) 1507, 1901
BciT130I CCWGG 2 cut(s) 141, 624
BciVI GTATCC 2 cut(s) 1041, 1129
BclI TGATCA 2 cut(s) 331, 1594
BcoDI GTCTC 5 cut(s) 177, 572, 624, 910, 976
BfaI CTAG 5 cut(s) 78, 362, 591, 1419, 1779
BfmI CTRYAG 2 cut(s) 18, 537
BfoI RGCGCY 1 cut(s) 1440
BfuAI ACCTGC 1 cut(s) 681
BfuI GTATCC 2 cut(s) 1041, 1129
BglII AGATCT 1 cut(s) 391
BisI GCNGC 8 cut(s) 69, 72, 75, 249, 1289, 1467, 1470, 1479
BlpI GCTNAGC 1 cut(s) 926
BlsI GCNGC 8 cut(s) 70, 73, 76, 250, 1290, 1468, 1471, 1480
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 141, 624
Bme18I GGWCC 3 cut(s) 37, 187, 993
BmeT110I CYCGRG 2 cut(s) 554, 1717
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 6 cut(s) 37, 187, 855, 993, 1712, 1713
BmiI GGNNCC 7 cut(s) 38, 113, 1322, 1605, 1714, 1800, 1915
BmrFI CCNGG 2 cut(s) 141, 624
BmrI ACTGGG 4 cut(s) 469, 572, 834, 1050
BmsI GCATC 3 cut(s) 1003, 1138, 1327
BmuI ACTGGG 4 cut(s) 469, 572, 834, 1050
BpiI GAAGAC 2 cut(s) 494, 1737
Bpu10I CCTNAGC 1 cut(s) 64
Bpu1102I GCTNAGC 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 1238
BsaI GGTCTC 3 cut(s) 572, 624, 910
BsaJI CCNNGG 9 cut(s) 139, 205, 407, 509, 947, 1106, 1171, 1331, 1917
BsaWI WCCGGW 1 cut(s) 995
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 1333, 1837, 1838, 1839
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 4 cut(s) 464, 567, 829, 1045
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 601, 640
BseBI CCWGG 2 cut(s) 141, 624
BseDI CCNNGG 9 cut(s) 139, 205, 407, 509, 947, 1106, 1171, 1331, 1917
BseGI GGATG 5 cut(s) 88, 702, 1327, 1342, 1539
BseLI CCNNNNNNNGG 5 cut(s) 121, 1333, 1837, 1838, 1839
BseMI GCAATG 2 cut(s) 601, 640
BseMII CTCAG 7 cut(s) 32, 248, 746, 842, 917, 1284, 1845
BseNI ACTGG 4 cut(s) 464, 567, 829, 1045
BseRI GAGGAG 1 cut(s) 1576
BseSI GKGCMC 2 cut(s) 116, 1716
BseXI GCAGC 8 cut(s) 55, 58, 61, 235, 1275, 1465, 1478, 1481
BseYI CCCAGC 1 cut(s) 1709
BshFI GGCC 3 cut(s) 857, 1209, 1714
BshNI GGYRCC 2 cut(s) 111, 1603
BshTI ACCGGT 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 1742
BsiHKCI CYCGRG 2 cut(s) 554, 1717
BsiSI CCGG 1 cut(s) 996
BslFI GGGAC 2 cut(s) 50, 715
BslI CCNNNNNNNGG 5 cut(s) 121, 1333, 1837, 1838, 1839
BsmAI GTCTC 5 cut(s) 177, 572, 624, 910, 976
BsmFI GGGAC 2 cut(s) 50, 715
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 3 cut(s) 857, 1209, 1714
Bso31I GGTCTC 3 cut(s) 572, 624, 910
BsoBI CYCGRG 2 cut(s) 554, 1717
Bsp120I GGGCCC 1 cut(s) 1712
Bsp1286I GDGCHC 4 cut(s) 116, 1250, 1716, 1742
Bsp143I GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
Bsp1720I GCTNAGC 1 cut(s) 926
Bsp19I CCATGG 3 cut(s) 407, 509, 947
BspACI CCGC 1 cut(s) 1691
BspANI GGCC 3 cut(s) 857, 1209, 1714
BspCNI CTCAG 7 cut(s) 33, 247, 747, 843, 918, 1285, 1846
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 7 cut(s) 38, 113, 1322, 1605, 1714, 1800, 1915
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 3 cut(s) 305, 1315, 1328
BspQI GCTCTTC 2 cut(s) 120, 604
BspT107I GGYRCC 2 cut(s) 111, 1603
BspTNI GGTCTC 3 cut(s) 572, 624, 910
BsrDI GCAATG 2 cut(s) 601, 640
BsrFI RCCGGY 1 cut(s) 995
BsrI ACTGG 4 cut(s) 464, 567, 829, 1045
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 9 cut(s) 139, 205, 407, 509, 947, 1106, 1171, 1331, 1917
BssMI GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
BssSI CACGAG 1 cut(s) 1735
BssT1I CCWWGG 7 cut(s) 205, 407, 509, 947, 1106, 1171, 1331
Bst2BI CACGAG 1 cut(s) 1735
Bst2UI CCWGG 2 cut(s) 141, 624
Bst4CI ACNGT 6 cut(s) 156, 538, 801, 882, 1232, 1806
Bst6I CTCTTC 4 cut(s) 120, 604, 825, 1640
BstAPI GCANNNNNTGC 2 cut(s) 1288, 1478
BstC8I GCNNGC 2 cut(s) 954, 1483
BstDSI CCRYGG 4 cut(s) 407, 509, 947, 1917
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 5 cut(s) 88, 702, 1327, 1342, 1539
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 1 cut(s) 1439
BstKTI GATC 7 cut(s) 313, 334, 394, 1071, 1323, 1597, 1652
BstMAI GTCTC 5 cut(s) 177, 572, 624, 910, 976
BstMBI GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
BstNI CCWGG 2 cut(s) 141, 624
BstNSI RCATGY 1 cut(s) 1614
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 2 cut(s) 139, 622
BstSFI CTRYAG 2 cut(s) 18, 537
BstSLI GKGCMC 2 cut(s) 116, 1716
BstV1I GCAGC 8 cut(s) 55, 58, 61, 235, 1275, 1465, 1478, 1481
BstV2I GAAGAC 2 cut(s) 494, 1737
BstX2I RGATCY 2 cut(s) 391, 1320
BstXI CCANNNNNNTGG 1 cut(s) 1317
BstYI RGATCY 2 cut(s) 391, 1320
Bsu36I CCTNAGG 1 cut(s) 41
BsuI GTATCC 2 cut(s) 1041, 1129
BsuRI GGCC 3 cut(s) 857, 1209, 1714
BtgI CCRYGG 4 cut(s) 407, 509, 947, 1917
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 5 cut(s) 88, 702, 1327, 1342, 1539
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 2 cut(s) 920, 1531
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 2 cut(s) 954, 1483
CaiI CAGNNNCTG 2 cut(s) 536, 799
CciI TCATGA 1 cut(s) 910
CfoI GCGC 1 cut(s) 1439
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 6 cut(s) 37, 187, 855, 993, 1712, 1713
CpoI CGGWCCG 1 cut(s) 993
Csp6I GTAC 3 cut(s) 240, 457, 1604
CspAI ACCGGT 1 cut(s) 995
CspCI CAANNNNNGTGG 2 cut(s) 1313, 1348
CspI CGGWCCG 1 cut(s) 993
CviAII CATG 9 cut(s) 408, 510, 615, 911, 948, 1211, 1611, 1809, 1869
CviQI GTAC 3 cut(s) 240, 457, 1604
DpnI GATC 7 cut(s) 312, 333, 393, 1070, 1322, 1596, 1651
DpnII GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 1207
Eam1104I CTCTTC 4 cut(s) 120, 604, 825, 1640
EarI CTCTTC 4 cut(s) 120, 604, 825, 1640
Ecl136II GAGCTC 1 cut(s) 1740
Eco130I CCWWGG 7 cut(s) 205, 407, 509, 947, 1106, 1171, 1331
Eco24I GRGCYC 3 cut(s) 1250, 1716, 1742
Eco31I GGTCTC 3 cut(s) 572, 624, 910
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 3 cut(s) 37, 187, 993
Eco53kI GAGCTC 1 cut(s) 1740
Eco57I CTGAAG 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 2 cut(s) 554, 1717
Eco91I GGTNACC 1 cut(s) 998
EcoICRI GAGCTC 1 cut(s) 1740
EcoO109I RGGNCCY 2 cut(s) 37, 1713
EcoO65I GGTNACC 1 cut(s) 998
EcoRII CCWGG 2 cut(s) 139, 622
EcoRV GATATC 1 cut(s) 1168
EcoT14I CCWWGG 7 cut(s) 205, 407, 509, 947, 1106, 1171, 1331
EcoT38I GRGCYC 3 cut(s) 1250, 1716, 1742
ErhI CCWWGG 7 cut(s) 205, 407, 509, 947, 1106, 1171, 1331
FaeI CATG 9 cut(s) 411, 513, 618, 914, 951, 1214, 1614, 1812, 1872
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 2 cut(s) 50, 715
FatI CATG 9 cut(s) 407, 509, 614, 910, 947, 1210, 1610, 1808, 1868
FbaI TGATCA 2 cut(s) 331, 1594
Fnu4HI GCNGC 8 cut(s) 69, 72, 75, 249, 1289, 1467, 1470, 1479
FokI GGATG 5 cut(s) 95, 709, 1314, 1349, 1526
FriOI GRGCYC 3 cut(s) 1250, 1716, 1742
Fsp4HI GCNGC 8 cut(s) 69, 72, 75, 249, 1289, 1467, 1470, 1479
FspBI CTAG 5 cut(s) 78, 362, 591, 1419, 1779
GlaI GCGC 1 cut(s) 1438
GluI GCNGC 8 cut(s) 69, 72, 75, 249, 1289, 1467, 1470, 1479
GsaI CCCAGC 1 cut(s) 1713
HaeII RGCGCY 1 cut(s) 1440
HaeIII GGCC 3 cut(s) 857, 1209, 1714
HapII CCGG 1 cut(s) 996
HhaI GCGC 1 cut(s) 1439
Hin1II CATG 9 cut(s) 411, 513, 618, 914, 951, 1214, 1614, 1812, 1872
Hin6I GCGC 1 cut(s) 1437
HinP1I GCGC 1 cut(s) 1437
HincII GTYRAC 1 cut(s) 1513
HindII GTYRAC 1 cut(s) 1513
HindIII AAGCTT 2 cut(s) 379, 435
HinfI GANTC 3 cut(s) 1346, 1751, 1847
HpaII CCGG 1 cut(s) 996
HphI GGTGA 3 cut(s) 341, 1280, 1561
Hpy166II GTNNAC 6 cut(s) 457, 473, 551, 906, 1199, 1513
Hpy188I TCNGA 8 cut(s) 237, 749, 852, 993, 1599, 1822, 1855, 1937
Hpy188III TCNNGA 5 cut(s) 569, 911, 1235, 1447, 1719
Hpy8I GTNNAC 6 cut(s) 457, 473, 551, 906, 1199, 1513
HpyAV CCTTC 4 cut(s) 694, 806, 1594, 1817
HpyCH4III ACNGT 6 cut(s) 156, 538, 801, 882, 1232, 1806
HpyCH4IV ACGT 2 cut(s) 499, 1303
HpyCH4V TGCA 8 cut(s) 264, 376, 389, 670, 1016, 1340, 1481, 1663
HpySE526I ACGT 2 cut(s) 499, 1303
Hsp92II CATG 9 cut(s) 411, 513, 618, 914, 951, 1214, 1614, 1812, 1872
HspAI GCGC 1 cut(s) 1437
KpnI GGTACC 1 cut(s) 1607
Ksp22I TGATCA 2 cut(s) 331, 1594
Kzo9I GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
LguI GCTCTTC 2 cut(s) 120, 604
LmnI GCTCC 5 cut(s) 278, 358, 630, 1891, 1913
Lsp1109I GCAGC 8 cut(s) 55, 58, 61, 235, 1275, 1465, 1478, 1481
LweI GCATC 3 cut(s) 1003, 1138, 1327
MaeI CTAG 5 cut(s) 78, 362, 591, 1419, 1779
MaeII ACGT 2 cut(s) 499, 1303
MaeIII GTNAC 3 cut(s) 493, 838, 998
MalI GATC 7 cut(s) 312, 333, 393, 1070, 1322, 1596, 1651
MboI GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
MflI RGATCY 2 cut(s) 391, 1320
MhlI GDGCHC 4 cut(s) 116, 1250, 1716, 1742
MlsI TGGCCA 1 cut(s) 1209
MluCI AATT 8 cut(s) 131, 515, 656, 967, 1253, 1618, 1655, 1786
MluNI TGGCCA 1 cut(s) 1209
MmeI TCCRAC 3 cut(s) 608, 685, 971
Mox20I TGGCCA 1 cut(s) 1209
MroXI GAANNNNTTC 3 cut(s) 219, 770, 1127
MscI TGGCCA 1 cut(s) 1209
MseI TTAA 5 cut(s) 894, 972, 1356, 1383, 1556
MslI CAYNNNNRTG 4 cut(s) 157, 306, 371, 1807
Msp20I TGGCCA 1 cut(s) 1209
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 2 cut(s) 141, 624
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 2 cut(s) 141, 624
NcoI CCATGG 3 cut(s) 407, 509, 947
NdeII GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
NlaIII CATG 9 cut(s) 411, 513, 618, 914, 951, 1214, 1614, 1812, 1872
NlaIV GGNNCC 7 cut(s) 38, 113, 1322, 1605, 1714, 1800, 1915
NmuCI GTSAC 2 cut(s) 493, 838
NspI RCATGY 1 cut(s) 1614
OliI CACNNNNGTG 1 cut(s) 157
PaeR7I CTCGAG 2 cut(s) 554, 1717
PagI TCATGA 1 cut(s) 910
PaqCI CACCTGC 1 cut(s) 681
PciI ACATGT 1 cut(s) 1610
PciSI GCTCTTC 2 cut(s) 120, 604
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 3 cut(s) 219, 770, 1127
PfeI GAWTC 3 cut(s) 1346, 1751, 1847
PflFI GACNNNGTC 1 cut(s) 987
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 8 cut(s) 70, 73, 76, 250, 1290, 1468, 1471, 1480
PpuMI RGGWCCY 1 cut(s) 37
PscI ACATGT 1 cut(s) 1610
Psp124BI GAGCTC 1 cut(s) 1742
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 139, 622
PspEI GGTNACC 1 cut(s) 998
PspFI CCCAGC 1 cut(s) 1709
PspGI CCWGG 2 cut(s) 139, 622
PspN4I GGNNCC 7 cut(s) 38, 113, 1322, 1605, 1714, 1800, 1915
PspOMI GGGCCC 1 cut(s) 1712
PspPI GGNCC 6 cut(s) 37, 187, 855, 993, 1712, 1713
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 554
PstNI CAGNNNCTG 2 cut(s) 536, 799
PsuI RGATCY 2 cut(s) 391, 1320
PsyI GACNNNGTC 1 cut(s) 987
RsaI GTAC 3 cut(s) 241, 458, 1605
RsaNI GTAC 3 cut(s) 240, 457, 1604
RseI CAYNNNNRTG 4 cut(s) 157, 306, 371, 1807
Rsr2I CGGWCCG 1 cut(s) 993
RsrII CGGWCCG 1 cut(s) 993
SacI GAGCTC 1 cut(s) 1742
SapI GCTCTTC 2 cut(s) 120, 604
SaqAI TTAA 5 cut(s) 894, 972, 1356, 1383, 1556
SatI GCNGC 8 cut(s) 69, 72, 75, 249, 1289, 1467, 1470, 1479
Sau3AI GATC 7 cut(s) 310, 331, 391, 1068, 1320, 1594, 1649
Sau96I GGNCC 6 cut(s) 37, 187, 855, 993, 1712, 1713
ScaI AGTACT 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 141, 624
SduI GDGCHC 4 cut(s) 116, 1250, 1716, 1742
SfaNI GCATC 3 cut(s) 1003, 1138, 1327
SfcI CTRYAG 2 cut(s) 18, 537
Sfr274I CTCGAG 2 cut(s) 554, 1717
SinI GGWCC 3 cut(s) 37, 187, 993
SlaI CTCGAG 2 cut(s) 554, 1717
SmiMI CAYNNNNRTG 4 cut(s) 157, 306, 371, 1807
SmlI CTYRAG 3 cut(s) 554, 1217, 1717
SmoI CTYRAG 3 cut(s) 554, 1217, 1717
Sse9I AATT 8 cut(s) 131, 515, 656, 967, 1253, 1618, 1655, 1786
SsiI CCGC 1 cut(s) 1691
SspMI CTAG 5 cut(s) 78, 362, 591, 1419, 1779
SstI GAGCTC 1 cut(s) 1742
StyD4I CCNGG 2 cut(s) 139, 622
StyI CCWWGG 7 cut(s) 205, 407, 509, 947, 1106, 1171, 1331
TaaI ACNGT 6 cut(s) 156, 538, 801, 882, 1232, 1806
TaiI ACGT 2 cut(s) 502, 1306
TaqI TCGA 8 cut(s) 145, 258, 450, 555, 570, 663, 784, 1718
TasI AATT 8 cut(s) 131, 515, 656, 967, 1253, 1618, 1655, 1786
TatI WGTACW 2 cut(s) 239, 456
TfiI GAWTC 3 cut(s) 1346, 1751, 1847
Tru1I TTAA 5 cut(s) 894, 972, 1356, 1383, 1556
Tru9I TTAA 5 cut(s) 894, 972, 1356, 1383, 1556
TscAI CASTG 2 cut(s) 927, 1531
TseFI GTSAC 2 cut(s) 493, 838
TseI GCWGC 8 cut(s) 68, 71, 74, 248, 1288, 1466, 1469, 1478
Tsp45I GTSAC 2 cut(s) 493, 838
TspDTI ATGAA 9 cut(s) 591, 713, 803, 1136, 1515, 1743, 1779, 1803, 1874
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 2 cut(s) 927, 1531
Tth111I GACNNNGTC 1 cut(s) 987
VpaK11BI GGWCC 3 cut(s) 37, 187, 993
XapI RAATTY 5 cut(s) 656, 1253, 1618, 1655, 1786
XceI RCATGY 1 cut(s) 1614
XhoI CTCGAG 2 cut(s) 554, 1717
XmnI GAANNNNTTC 3 cut(s) 219, 770, 1127
XspI CTAG 5 cut(s) 78, 362, 591, 1419, 1779
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.