pycom16g18220

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006855
Physical Location & Seq
Reverse (-)
14788351 .. 14789119
769 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g18220.1

Sequence Viewer

Length: 666 bp
ATGCAAAGGGAACTCCTGATACGCTTTCCTCTATGGAAATTGATGCCGGCAACAGTGACAGGAACCGTAGCAAAATCTTCACTCGAGGAACTGGGTCTCGAAAATGAAACAGAAAAGTCTAGCAATGCCCTCCTAGGAAGAGCATGGTCTCCAGGTTGGAGCAATGCTGACAAGGCTCTAAGTAAATTTTTAGAGTTGCACCTGCTTGATTATTCAAACAACAGGGTGAAGGCTGGGCAAAACTCCACATCCCTTTTGTCCCCATATCTTCACTTTGGAGAACTGAGCGTGAGGAAAGTTTTCCAATCAGCTCGAATGAAGCAGATAATGTGGGCAAAAGAAGGGAACTCTACAGGGGAAGAGAGTGTGACTCTTTTTCTGAGGGCCATTGGGCTTAGAGAATACTCAAGGTATCTATGTTTTAACTTCCCGTTCACACATGAGAGACCACTACTGAGCAACTTGAAGTATTTTCCGTGGCAAGCTGACCAGGCCAATTTTAAGGCTTGGAGACAAGGTCGGACCGGTTTAAAGATGAGGATGCCAAATCATGACATATATTCTGTTTTTAATTACCTAATTGTAATGTGCTGTGTGTACATGTTAGTTAGAGTTGTTATGGTTGTTATGCCTATAAATACCATCTCATGTAATTATTTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

222

Amino Acids

25.53

Weight (kDa)

9.49

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_7 PF03441 126 - 177 3.8e-07 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 2 cut(s) 216, 466
AjnI CCWGG 2 cut(s) 151, 489
AluBI AGCT 2 cut(s) 311, 485
AluI AGCT 2 cut(s) 311, 485
Alw26I GTCTC 4 cut(s) 101, 153, 439, 505
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 384, 492
ApoI RAATTY 1 cut(s) 185
AsiGI ACCGGT 1 cut(s) 524
Asp700I GAANNNNTTC 1 cut(s) 299
AspA2I CCTAGG 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 384, 522
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 522
AvrII CCTAGG 1 cut(s) 133
BccI CCATC 1 cut(s) 650
BciT130I CCWGG 2 cut(s) 153, 491
BcoDI GTCTC 4 cut(s) 101, 153, 439, 505
BfaI CTAG 2 cut(s) 120, 134
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 210
BlnI CCTAGG 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 153, 491
Bme18I GGWCC 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 384, 522
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 153, 491
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 33, 531
BmuI ACTGGG 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 391
BsaI GGTCTC 3 cut(s) 101, 153, 439
BsaJI CCNNGG 2 cut(s) 133, 476
BsaWI WCCGGW 1 cut(s) 524
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bse118I RCCGGY 2 cut(s) 46, 524
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 2 cut(s) 130, 169
BseBI CCWGG 2 cut(s) 153, 491
BseDI CCNNGG 2 cut(s) 133, 476
BseGI GGATG 2 cut(s) 248, 546
BseMI GCAATG 2 cut(s) 130, 169
BseMII CTCAG 3 cut(s) 275, 371, 446
BseNI ACTGG 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 386, 494
BshTI ACCGGT 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 47, 525
BslFI GGGAC 1 cut(s) 244
BsmAI GTCTC 4 cut(s) 101, 153, 439, 505
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 2 cut(s) 386, 494
Bso31I GGTCTC 3 cut(s) 101, 153, 439
BsoBI CYCGRG 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 597
BspANI GGCC 2 cut(s) 386, 494
BspCNI CTCAG 3 cut(s) 276, 372, 447
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 133
BspTNI GGTCTC 3 cut(s) 101, 153, 439
BsrDI GCAATG 2 cut(s) 130, 169
BsrFI RCCGGY 2 cut(s) 46, 524
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 2 cut(s) 46, 524
BssECI CCNNGG 2 cut(s) 133, 476
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 2 cut(s) 153, 491
Bst4CI ACNGT 2 cut(s) 55, 67
Bst6I CTCTTC 2 cut(s) 133, 354
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 2 cut(s) 48, 483
BstDEI CTNAG 5 cut(s) 179, 284, 380, 395, 455
BstDSI CCRYGG 1 cut(s) 476
BstF5I GGATG 2 cut(s) 248, 546
BstMAI GTCTC 4 cut(s) 101, 153, 439, 505
BstMWI GCNNNNNNNGC 2 cut(s) 173, 491
BstNI CCWGG 2 cut(s) 153, 491
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 2 cut(s) 151, 489
BstSFI CTRYAG 1 cut(s) 351
BsuRI GGCC 2 cut(s) 386, 494
BtgI CCRYGG 1 cut(s) 476
BtsCI GGATG 2 cut(s) 248, 546
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 48, 483
CciI TCATGA 1 cut(s) 550
Cfr10I RCCGGY 2 cut(s) 46, 524
Cfr13I GGNCC 2 cut(s) 384, 522
CpoI CGGWCCG 1 cut(s) 522
Csp6I GTAC 1 cut(s) 598
CspAI ACCGGT 1 cut(s) 524
CspI CGGWCCG 1 cut(s) 522
CviAII CATG 5 cut(s) 144, 440, 551, 601, 648
CviJI RGCY 8 cut(s) 176, 233, 311, 386, 394, 485, 494, 506
CviKI_1 RGCY 8 cut(s) 176, 233, 311, 386, 394, 485, 494, 506
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 5 cut(s) 179, 284, 380, 395, 455
DraI TTTAAA 1 cut(s) 531
Eam1104I CTCTTC 2 cut(s) 133, 354
EarI CTCTTC 2 cut(s) 133, 354
Eco130I CCWWGG 1 cut(s) 133
Eco31I GGTCTC 3 cut(s) 101, 153, 439
Eco47I GGWCC 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 151, 489
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 5 cut(s) 147, 443, 554, 604, 651
FaqI GGGAC 1 cut(s) 244
FatI CATG 5 cut(s) 143, 439, 550, 600, 647
FokI GGATG 2 cut(s) 235, 553
FspBI CTAG 2 cut(s) 120, 134
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 386, 494
HapII CCGG 2 cut(s) 47, 525
Hin1II CATG 5 cut(s) 147, 443, 554, 604, 651
HinfI GANTC 1 cut(s) 370
HpaII CCGG 2 cut(s) 47, 525
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 435, 598
Hpy188I TCNGA 2 cut(s) 381, 522
Hpy188III TCNNGA 3 cut(s) 16, 98, 551
Hpy8I GTNNAC 2 cut(s) 435, 598
HpyAV CCTTC 2 cut(s) 223, 335
HpyCH4III ACNGT 2 cut(s) 55, 67
HpyCH4V TGCA 2 cut(s) 4, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 491
HpyF3I CTNAG 5 cut(s) 179, 284, 380, 395, 455
Hsp92II CATG 5 cut(s) 147, 443, 554, 604, 651
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 159
LweI GCATC 2 cut(s) 33, 531
MaeI CTAG 2 cut(s) 120, 134
MaeIII GTNAC 2 cut(s) 55, 367
MboII GAAGA 4 cut(s) 69, 150, 260, 371
MluCI AATT 6 cut(s) 38, 185, 496, 571, 579, 652
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 2 cut(s) 137, 500
MnlI CCTC 6 cut(s) 39, 79, 140, 285, 375, 531
MroNI GCCGGC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 5 cut(s) 423, 501, 530, 570, 664
MspI CCGG 2 cut(s) 47, 525
MspR9I CCNGG 2 cut(s) 153, 491
MvaI CCWGG 2 cut(s) 153, 491
MwoI GCNNNNNNNGC 2 cut(s) 173, 491
NaeI GCCGGC 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 5 cut(s) 147, 443, 554, 604, 651
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 55, 367
NspI RCATGY 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 550
PaqCI CACCTGC 1 cut(s) 210
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 133
PdiI GCCGGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 299
PflFI GACNNNGTC 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 524
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 151, 489
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 151, 489
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 384, 522
PspXI VCTCGAGB 1 cut(s) 83
PsrI GAACNNNNNNTAC 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 516
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
Rsr2I CGGWCCG 1 cut(s) 522
RsrII CGGWCCG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 5 cut(s) 423, 501, 530, 570, 664
Sau96I GGNCC 2 cut(s) 384, 522
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 153, 491
SetI ASST 7 cut(s) 157, 204, 313, 413, 487, 520, 579
SfaNI GCATC 2 cut(s) 33, 531
SfcI CTRYAG 1 cut(s) 351
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 83, 406
SmoI CTYRAG 2 cut(s) 83, 406
Sse9I AATT 6 cut(s) 38, 185, 496, 571, 579, 652
SspMI CTAG 2 cut(s) 120, 134
StyD4I CCNGG 2 cut(s) 151, 489
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 55, 67
TaqI TCGA 3 cut(s) 84, 99, 313
TasI AATT 6 cut(s) 38, 185, 496, 571, 579, 652
TatI WGTACW 1 cut(s) 597
Tru1I TTAA 5 cut(s) 423, 501, 530, 570, 664
Tru9I TTAA 5 cut(s) 423, 501, 530, 570, 664
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 2 cut(s) 55, 367
Tsp45I GTSAC 2 cut(s) 55, 367
TspDTI ATGAA 2 cut(s) 120, 332
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 83
XmaJI CCTAGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 2 cut(s) 120, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.