Rorug03G0341400

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006855
Physical Location & Seq
Reverse (-)
40972798 .. 40975753
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0341400.1

Sequence Viewer

Length: 795 bp
ATGTTATGGGCACAAGCAGAGTTGATGAGGATGCTGAACCTGTTTTACAATATGGACACAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCAAATCACACTTTTGCCCCCACTGATTTGAGAAGCTATTCTTCAGATTTTCTGCTTAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTGAAGCCAGAGACAAGATATTGCGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTATTTGTGTTCGTGGTGAACCTGGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTACTAAACCAAAGACATGAGGTCGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCTTTAGAGAAAGGTTTGTGCCTTCGAGGAGTGGTGATGATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACACAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACGGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTTATTCCGATCAGAAACAAACTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

264

Amino Acids

29.04

Weight (kDa)

6.38

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 179 - 234 1.9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 554
AccI GTMKAC 1 cut(s) 751
AciI CCGC 1 cut(s) 322
AclWI GGATC 5 cut(s) 278, 635, 648, 718, 731
AcuI CTGAAG 2 cut(s) 147, 321
AcyI GRCGYC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 554
AhdI GACNNNNNGTC 1 cut(s) 458
AjnI CCWGG 3 cut(s) 85, 334, 382
AluBI AGCT 4 cut(s) 156, 431, 467, 671
AluI AGCT 4 cut(s) 156, 431, 467, 671
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 5 cut(s) 278, 635, 648, 718, 731
AlwNI CAGNNNCTG 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 271, 389, 542
BaeGI GKGCMC 1 cut(s) 13
BamHI GGATCC 2 cut(s) 640, 723
BccI CCATC 3 cut(s) 118, 424, 763
BceAI ACGGC 2 cut(s) 187, 675
BciT130I CCWGG 3 cut(s) 87, 336, 384
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 273, 591
Bme1390I CCNGG 3 cut(s) 87, 336, 384
BmeRI GACNNNNNGTC 1 cut(s) 458
BmiI GGNNCC 3 cut(s) 588, 642, 725
BmrFI CCNGG 3 cut(s) 87, 336, 384
BmsI GCATC 2 cut(s) 21, 343
BpuEI CTTGAG 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 3 cut(s) 87, 336, 384
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 36, 98
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 784
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 283, 535, 640, 723, 766
BspACI CCGC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 588, 642, 725
BspPI GGATC 5 cut(s) 278, 635, 648, 718, 731
BsrDI GCAATG 1 cut(s) 618
BsrI ACTGG 1 cut(s) 784
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 5 cut(s) 283, 535, 640, 723, 766
BssNI GRCGYC 1 cut(s) 332
Bst2UI CCWGG 3 cut(s) 87, 336, 384
Bst4CI ACNGT 2 cut(s) 394, 599
BstACI GRCGYC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 176, 432
BstF5I GGATG 2 cut(s) 36, 98
BstKTI GATC 5 cut(s) 286, 538, 643, 726, 769
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 5 cut(s) 283, 535, 640, 723, 766
BstMWI GCNNNNNNNGC 2 cut(s) 659, 668
BstNI CCWGG 3 cut(s) 87, 336, 384
BstSCI CCNGG 3 cut(s) 85, 334, 382
BstSLI GKGCMC 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 640, 723
BstYI RGATCY 2 cut(s) 640, 723
BtsCI GGATG 2 cut(s) 36, 98
BtsIMutI CAGTG 3 cut(s) 141, 604, 790
Cac8I GCNNGC 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 407
CseI GACGC 1 cut(s) 340
CsiI ACCWGGT 1 cut(s) 382
CviAII CATG 1 cut(s) 455
DdeI CTNAG 2 cut(s) 176, 432
DpnI GATC 5 cut(s) 285, 537, 642, 725, 768
DpnII GATC 5 cut(s) 283, 535, 640, 723, 766
DraI TTTAAA 1 cut(s) 562
DrdI GACNNNNNNGTC 1 cut(s) 268
DriI GACNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 458
Eco57I CTGAAG 2 cut(s) 147, 321
EcoRII CCWGG 3 cut(s) 85, 334, 382
FaeI CATG 1 cut(s) 458
FaiI YATR 9 cut(s) 7, 53, 207, 280, 282, 345, 456, 622, 665
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 1 cut(s) 454
FblI GTMKAC 1 cut(s) 751
FokI GGATG 2 cut(s) 43, 85
FspBI CTAG 2 cut(s) 273, 591
HgaI GACGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 1 cut(s) 458
HinfI GANTC 3 cut(s) 245, 707, 783
HphI GGTGA 3 cut(s) 271, 389, 542
Hpy166II GTNNAC 3 cut(s) 380, 580, 752
Hpy188I TCNGA 8 cut(s) 103, 166, 244, 435, 464, 766, 771, 788
Hpy8I GTNNAC 3 cut(s) 380, 580, 752
HpyAV CCTTC 2 cut(s) 528, 722
HpyCH4III ACNGT 2 cut(s) 394, 599
HpyCH4V TGCA 1 cut(s) 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 668
HpyF3I CTNAG 2 cut(s) 176, 432
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 1 cut(s) 458
Kzo9I GATC 5 cut(s) 283, 535, 640, 723, 766
LmnI GCTCC 2 cut(s) 464, 586
LweI GCATC 2 cut(s) 21, 343
MabI ACCWGGT 1 cut(s) 382
MaeI CTAG 2 cut(s) 273, 591
MaeIII GTNAC 5 cut(s) 89, 114, 259, 394, 680
MalI GATC 5 cut(s) 285, 537, 642, 725, 768
MboI GATC 5 cut(s) 283, 535, 640, 723, 766
MboII GAAGA 2 cut(s) 153, 305
MflI RGATCY 2 cut(s) 640, 723
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 4 cut(s) 21, 451, 516, 714
MroXI GAANNNNTTC 1 cut(s) 157
MseI TTAA 1 cut(s) 561
MspR9I CCNGG 3 cut(s) 87, 336, 384
MvaI CCWGG 3 cut(s) 87, 336, 384
MwoI GCNNNNNNNGC 2 cut(s) 659, 668
NdeII GATC 5 cut(s) 283, 535, 640, 723, 766
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 3 cut(s) 588, 642, 725
NmuCI GTSAC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 3 cut(s) 245, 707, 783
PflMI CCANNNNNTGG 1 cut(s) 554
Psp6I CCWGG 3 cut(s) 85, 334, 382
PspGI CCWGG 3 cut(s) 85, 334, 382
PspN4I GGNNCC 3 cut(s) 588, 642, 725
PsrI GAACNNNNNNTAC 4 cut(s) 29, 61, 223, 255
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 2 cut(s) 640, 723
SaqAI TTAA 1 cut(s) 561
Sau3AI GATC 5 cut(s) 283, 535, 640, 723, 766
ScrFI CCNGG 3 cut(s) 87, 336, 384
SduI GDGCHC 1 cut(s) 13
SexAI ACCWGGT 1 cut(s) 382
SfaNI GCATC 2 cut(s) 21, 343
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 322
SspMI CTAG 2 cut(s) 273, 591
StyD4I CCNGG 3 cut(s) 85, 334, 382
TaaI ACNGT 2 cut(s) 394, 599
TaqI TCGA 1 cut(s) 521
TasI AATT 1 cut(s) 79
TfiI GAWTC 3 cut(s) 245, 707, 783
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 2 cut(s) 148, 604
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 541
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 2 cut(s) 148, 604
Van91I CCANNNNNTGG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 2 cut(s) 273, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.