Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

1208521 .. 1210026

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGACCGTGAAAGGCCTTCTTAAAGGCCTTCGCTACATTACTCAGATTTTCGACGAAGAAAAAGACAAGGACATGCAGATCGGGTTTCCTACCGATGTAAAGCATGTCGCCCACATCGGATCCGACGGTCCCGCGACCAATGTGCCAAGCTGGATGGGTGACTTCAAACCTCAAGAAAACGAGAATGGTCAAGTAGTTTCTCGAGCAGATGCCAACAACAATCAAATAGGAGAAGGAGTTGGATTACAAGAGTTGTTGCCTCCTACCGACAAACCAAAGCACAAGAAGACAAGGCGTAAATCCGAGACGGTCTCACAAAACGGTTCTCCGCCTAGGCGAAACAGCAGTGCCTCAGCATCAGATATGCAACCAAAAAACACAAGACGTCACCACAGGAGTAGGCACGGGTCGATAGATTCATCGAATGATCCATCAGTTAGGAGGAGGCGTGTTGTCTCGGTTACCACCAACGATATGGAAGGTTCTTACCCTCTTTCAGATAGTTCTACTCATAGTAGAAAGTCTACATCACGTCATAGGAAGCCAAAAGGATCAGGAGGAGGAGAGCTATCAATGAAGAAGACGAAAGGGAAAACTGAGAATCCTATTGTTGAATCAGTCGATACATGTAATGATAATAATATCAGTGACAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008064 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016043 GO:0016049 GO:0017157 GO:0019725 GO:0022414 GO:0023051 GO:0023056 GO:0030003 GO:0030154 GO:0030832 GO:0030834 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042592 GO:0043244 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051480 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0072503 GO:0072507 GO:0090066 GO:0098771 GO:0110053 GO:1901879 GO:1902531 GO:1902533 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

220

Amino Acids

24.26

Weight (kDa)

9.68

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	135, 332
AclWI	GGATC	4 cut(s)	117, 130, 425, 562
AcyI	GRCGYC	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	169, 617
AjiI	CACGTC	1 cut(s)	536
AluBI	AGCT	2 cut(s)	153, 571
AluI	AGCT	2 cut(s)	153, 571
Alw26I	GTCTC	3 cut(s)	302, 319, 463
AlwI	GGATC	4 cut(s)	117, 130, 425, 562
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	2 cut(s)	16, 28
AspA2I	CCTAGG	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	173, 383
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	296, 590
BbvCI	CCTCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	151, 442
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	3 cut(s)	302, 319, 463
BfaI	CTAG	1 cut(s)	336
BlnI	CCTAGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	124, 133
BmsI	GCATC	2 cut(s)	202, 368
BpiI	GAAGAC	2 cut(s)	296, 590
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu10I	CCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 436, 466
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	59, 369, 591
BseRI	GAGGAG	3 cut(s)	460, 576, 579
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	18, 30
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	3 cut(s)	302, 319, 463
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	18, 30
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	81, 122, 430, 554
BspACI	CCGC	2 cut(s)	135, 332
BspANI	GGCC	2 cut(s)	18, 30
BspCNI	CTCAG	3 cut(s)	58, 368, 592
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	124, 133
BspPI	GGATC	4 cut(s)	117, 130, 425, 562
BspTNI	GGTCTC	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	81, 122, 430, 554
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	10, 131, 313, 326
BstACI	GRCGYC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	45, 355, 600
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	84, 125, 433, 557
BstMAI	GTCTC	3 cut(s)	302, 319, 463
BstMBI	GATC	4 cut(s)	81, 122, 430, 554
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	3 cut(s)	79, 110, 633
BstPI	GGTNACC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	296, 590
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	18, 30
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 655
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	3 cut(s)	76, 107, 630
CviJI	RGCY	5 cut(s)	18, 30, 153, 547, 571
CviKI_1	RGCY	5 cut(s)	18, 30, 153, 547, 571
DdeI	CTNAG	3 cut(s)	45, 355, 600
DpnI	GATC	4 cut(s)	83, 124, 432, 556
DpnII	GATC	4 cut(s)	81, 122, 430, 554
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	2 cut(s)	18, 30
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	3 cut(s)	79, 110, 633
FaiI	YATR	7 cut(s)	77, 108, 368, 479, 516, 540, 631
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	75, 106, 629
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	527
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	18, 30
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	79, 110, 633
HinfI	GANTC	3 cut(s)	419, 604, 617
HphI	GGTGA	2 cut(s)	173, 383
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	6 cut(s)	48, 122, 127, 307, 364, 502
Hpy188III	TCNNGA	3 cut(s)	176, 204, 558
Hpy8I	GTNNAC	1 cut(s)	528
Hpy99I	CGWCG	2 cut(s)	59, 131
HpyAV	CCTTC	4 cut(s)	29, 41, 230, 476
HpyCH4III	ACNGT	4 cut(s)	10, 131, 313, 326
HpyCH4IV	ACGT	2 cut(s)	388, 535
HpyCH4V	TGCA	2 cut(s)	79, 370
HpyF3I	CTNAG	3 cut(s)	45, 355, 600
HpySE526I	ACGT	2 cut(s)	388, 535
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	79, 110, 633
Kzo9I	GATC	4 cut(s)	81, 122, 430, 554
LpnPI	CCDG	3 cut(s)	139, 382, 543
LweI	GCATC	2 cut(s)	202, 368
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	388, 535
MaeIII	GTNAC	4 cut(s)	161, 389, 463, 650
MalI	GATC	4 cut(s)	83, 124, 432, 556
MboI	GATC	4 cut(s)	81, 122, 430, 554
MboII	GAAGA	4 cut(s)	71, 301, 592, 595
MflI	RGATCY	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	150, 223
MnlI	CCTC	8 cut(s)	183, 273, 364, 438, 441, 504, 554, 557
MseI	TTAA	1 cut(s)	24
MvnI	CGCG	1 cut(s)	137
NdeII	GATC	4 cut(s)	81, 122, 430, 554
NlaIII	CATG	3 cut(s)	79, 110, 633
NlaIV	GGNNCC	2 cut(s)	124, 133
NmuCI	GTSAC	3 cut(s)	161, 389, 650
NspI	RCATGY	3 cut(s)	79, 110, 633
PaeR7I	CTCGAG	1 cut(s)	204
PceI	AGGCCT	2 cut(s)	18, 30
PciI	ACATGT	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	419, 604, 617
PscI	ACATGT	1 cut(s)	629
PspEI	GGTNACC	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	124, 133
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	4 cut(s)	81, 122, 430, 554
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	6 cut(s)	155, 175, 391, 487, 538, 573
SfaNI	GCATC	2 cut(s)	202, 368
Sfr274I	CTCGAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	174, 204
SmoI	CTYRAG	2 cut(s)	174, 204
SseBI	AGGCCT	2 cut(s)	18, 30
SsiI	CCGC	2 cut(s)	135, 332
SspMI	CTAG	1 cut(s)	336
StuI	AGGCCT	2 cut(s)	18, 30
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	4 cut(s)	10, 131, 313, 326
TaiI	ACGT	2 cut(s)	391, 538
TaqI	TCGA	5 cut(s)	54, 205, 413, 425, 624
TfiI	GAWTC	3 cut(s)	419, 604, 617
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	355, 655
TseFI	GTSAC	3 cut(s)	161, 389, 650
Tsp45I	GTSAC	3 cut(s)	161, 389, 650
TspDTI	ATGAA	2 cut(s)	411, 593
TspRI	CASTG	2 cut(s)	355, 655
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	3 cut(s)	79, 110, 633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XhoI	CTCGAG	1 cut(s)	204
XmaJI	CCTAGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.