Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

9825149 .. 9827230

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCACAAAGGTGAAGGGTCTCTTGAAAGGCCTGAGGTACATTACACAGATATTCGAGGAAAAGGATCAAGAAATACAAATTGGCTTTCCCACAGATGTAAAGCATGTTGCACATATTGGGTGGGATGGTCCATCTGCAAATAGTACTCCCACCTGGATGAGCGAGTTCAAATCTCCTCAAGAATCCGCAGGGCAACTTGCTGTTAAAGAATTGTCCGCAAAAGATATAAATAAAACAGGACTTTCTATTGCCCAATCAATGGCACACCTGAACGAAATTCCAAAGTCTACATGTTCCCCATCCAAGAAGAGCTCTGATGGAAAAAGCAAAAAGAGTTCTAGGCGCCATCGCTCAGCGGAAGCCAGTGGAGTGGAGTCCCCAGCACGAGAAGGTAGTAGCCGGAATTCAAGAAGAAGCCGCAACTCTAATAATAGTCTTGGCTCCGAGTCCCCCTCACATGACCCACCTGGGCTCCCAAAACTCAGGAAGAAAAAGGGTTCCACTGATGGAGGATCAACAAAATCATCAAGAAAGCCACGATCTAAAGGCCAGACTTCATTAACTGACATGTCTCTTGAAGGTTCTGAGAATGGTAGTCCAATGCACGCGGCTTTTGCACGAGAGAAGGGTTCTGAGGTAATCCCAGCAGGAATTCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

221

Amino Acids

23.69

Weight (kDa)

9.93

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	611
AciI	CCGC	5 cut(s)	189, 219, 359, 421, 611
AclWI	GGATC	2 cut(s)	75, 523
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	279, 406, 654
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	2 cut(s)	41, 148
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	2 cut(s)	293, 570
AgsI	TTSAA	4 cut(s)	28, 172, 411, 581
AjnI	CCWGG	2 cut(s)	155, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	26, 579
AlwI	GGATC	2 cut(s)	75, 523
AoxI	GGCC	3 cut(s)	3, 31, 550
ApoI	RAATTY	3 cut(s)	279, 406, 654
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	317, 477
BauI	CACGAG	2 cut(s)	387, 621
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	6 cut(s)	122, 142, 310, 314, 357, 503
BciT130I	CCWGG	2 cut(s)	157, 471
BcoDI	GTCTC	2 cut(s)	26, 579
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	2 cut(s)	421, 612
BlpI	GCTNAGC	1 cut(s)	355
BlsI	GCNGC	2 cut(s)	422, 613
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	157, 471
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	4 cut(s)	347, 445, 476, 502
BmrFI	CCNGG	2 cut(s)	157, 471
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu1102I	GCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	157, 471
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	3 cut(s)	133, 165, 302
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	5 cut(s)	26, 369, 499, 579, 627
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	168
BseYI	CCCAGC	2 cut(s)	382, 646
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	3 cut(s)	5, 33, 552
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	2 cut(s)	364, 436
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	26, 579
BsmFI	GGGAC	2 cut(s)	364, 436
BsnI	GGCC	3 cut(s)	5, 33, 552
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	317, 477
Bsp143I	GATC	3 cut(s)	67, 515, 542
Bsp1720I	GCTNAGC	1 cut(s)	355
BspACI	CCGC	5 cut(s)	189, 219, 359, 421, 611
BspANI	GGCC	3 cut(s)	5, 33, 552
BspCNI	CTCAG	5 cut(s)	27, 368, 498, 580, 628
BspFNI	CGCG	1 cut(s)	611
BspLI	GGNNCC	4 cut(s)	347, 445, 476, 502
BspPI	GGATC	2 cut(s)	75, 523
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	67, 515, 542
BssNI	GRCGYC	1 cut(s)	346
BssSI	CACGAG	2 cut(s)	387, 621
Bst2BI	CACGAG	2 cut(s)	387, 621
Bst2UI	CCWGG	2 cut(s)	157, 471
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	5 cut(s)	35, 355, 485, 588, 636
BstF5I	GGATG	3 cut(s)	133, 165, 302
BstFNI	CGCG	1 cut(s)	611
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	70, 518, 545
BstMAI	GTCTC	2 cut(s)	26, 579
BstMBI	GATC	3 cut(s)	67, 515, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	157, 471
BstNSI	RCATGY	3 cut(s)	110, 297, 574
BstSCI	CCNGG	2 cut(s)	155, 469
BstUI	CGCG	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 33, 552
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	133, 165, 302
BtsIMutI	CAGTG	2 cut(s)	373, 504
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	40, 147
CviAII	CATG	4 cut(s)	107, 294, 461, 571
CviQI	GTAC	2 cut(s)	40, 147
DdeI	CTNAG	5 cut(s)	35, 355, 485, 588, 636
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	3 cut(s)	69, 517, 544
DpnII	GATC	3 cut(s)	67, 515, 542
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	317, 477
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	315
EcoRI	GAATTC	2 cut(s)	406, 654
EcoRII	CCWGG	2 cut(s)	155, 469
EcoT38I	GRGCYC	2 cut(s)	317, 477
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
FaeI	CATG	4 cut(s)	110, 297, 464, 574
FaiI	YATR	7 cut(s)	108, 117, 230, 295, 462, 572, 660
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	2 cut(s)	364, 436
FatI	CATG	4 cut(s)	106, 293, 460, 570
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	421, 612
FokI	GGATG	3 cut(s)	140, 172, 289
FriOI	GRGCYC	2 cut(s)	317, 477
Fsp4HI	GCNGC	2 cut(s)	421, 612
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	421, 612
GsaI	CCCAGC	2 cut(s)	386, 650
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	5, 33, 552
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	110, 297, 464, 574
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	185, 377, 449
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	319, 448, 589, 637
Hpy188III	TCNNGA	7 cut(s)	25, 71, 182, 411, 487, 531, 578
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	10, 386, 575, 622
HpyCH4V	TGCA	4 cut(s)	113, 140, 607, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	5 cut(s)	35, 355, 485, 588, 636
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	4 cut(s)	110, 297, 464, 574
HspAI	GCGC	1 cut(s)	346
KasI	GGCGCC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	67, 515, 542
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	2 cut(s)	449, 480
MaeI	CTAG	1 cut(s)	342
MalI	GATC	3 cut(s)	69, 517, 544
MboI	GATC	3 cut(s)	67, 515, 542
MboII	GAAGA	3 cut(s)	322, 426, 502
MhlI	GDGCHC	2 cut(s)	317, 477
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	81, 212, 279, 406, 654
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	346
MlyI	GAGTC	2 cut(s)	386, 458
MnlI	CCTC	6 cut(s)	30, 52, 189, 466, 506, 631
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	207, 563, 664
MslI	CAYNNNNRTG	2 cut(s)	11, 158
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	157, 471
MvaI	CCWGG	2 cut(s)	157, 471
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	1 cut(s)	617
NarI	GGCGCC	1 cut(s)	346
NdeII	GATC	3 cut(s)	67, 515, 542
NlaIII	CATG	4 cut(s)	110, 297, 464, 574
NlaIV	GGNNCC	4 cut(s)	347, 445, 476, 502
NspI	RCATGY	3 cut(s)	110, 297, 574
OliI	CACNNNNGTG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	2 cut(s)	293, 570
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	422, 613
PleI	GAGTC	2 cut(s)	385, 457
PluTI	GGCGCC	1 cut(s)	349
PpsI	GAGTC	2 cut(s)	385, 457
PscI	ACATGT	2 cut(s)	293, 570
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	155, 469
PspFI	CCCAGC	2 cut(s)	382, 646
PspGI	CCWGG	2 cut(s)	155, 469
PspN4I	GGNNCC	4 cut(s)	347, 445, 476, 502
PspPI	GGNCC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	41, 148
RsaNI	GTAC	2 cut(s)	40, 147
RseI	CAYNNNNRTG	2 cut(s)	11, 158
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	207, 563, 664
SatI	GCNGC	2 cut(s)	421, 612
Sau3AI	GATC	3 cut(s)	67, 515, 542
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	2 cut(s)	386, 458
ScrFI	CCNGG	2 cut(s)	157, 471
SduI	GDGCHC	2 cut(s)	317, 477
SetI	ASST	9 cut(s)	15, 41, 158, 273, 317, 397, 472, 586, 642
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	11, 158
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	5 cut(s)	81, 212, 279, 406, 654
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	5 cut(s)	189, 219, 359, 421, 611
SspDI	GGCGCC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	317
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	155, 469
TaqI	TCGA	1 cut(s)	57
TasI	AATT	5 cut(s)	81, 212, 279, 406, 654
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	2 cut(s)	423, 614
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	207, 563, 664
Tru9I	TTAA	3 cut(s)	207, 563, 664
TscAI	CASTG	2 cut(s)	373, 511
TspDTI	ATGAA	2 cut(s)	549, 647
TspRI	CASTG	2 cut(s)	373, 511
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	3 cut(s)	279, 406, 654
XceI	RCATGY	3 cut(s)	110, 297, 574
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.