Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000473.1

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

173822 .. 175151

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000473.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggccacaaaggtgaagggtctcttgaaaggcctgaggtacattacacagatattcgatgtaaagcatgttgcacatattggatgggatggtccatctgcaaatagtactcccacctggatgagcgagttcaaatctcctcaagaatccgcagggcaacttgctgttaaagaattgtccgcaaaagtacttgatgcatcacctgatgttgtaatgttgcttcgattagacaatcatagaccccaagagcttaagcagttagagaacaagccaacaatgtacattaagtttacggatccttttgcagatataaataaaacaggactttctattgcccaatcaatggcacacctgaacgaaattccaaagtctacatgttccccatccaagaagagctctgatggaaaaagcaaaaagagttctaggcgccatcgctcagcggaagccagtggagtggagtccccagcacgagaaggtagtagccggaattcaagaagaaaccgcaactctaataatagtcttggctccgagtccccctcacatgacccacctgggctcccaaaactcaggaagaaaaagggttccactgatggaggatcaacaaaatcatcaagaaagccacgatctaaaggccagacttcattaactgacatgtcacttgaaggttctgagaatggtagtccaatgcacgcggcttttgcacaagagaagggttctgaggtaatcccagcaggaattcatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

248

Amino Acids

26.88

Weight (kDa)

9.9

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	692
AciI	CCGC	5 cut(s)	150, 180, 440, 502, 692
AclWI	GGATC	3 cut(s)	290, 303, 604
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	360, 487, 735
AcyI	GRCGYC	1 cut(s)	427
AfaI	GTAC	4 cut(s)	41, 109, 189, 281
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	251
AflIII	ACRYGT	2 cut(s)	374, 651
AgsI	TTSAA	4 cut(s)	28, 133, 492, 662
AjnI	CCWGG	2 cut(s)	116, 550
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	250, 396
AluI	AGCT	2 cut(s)	250, 396
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	3 cut(s)	290, 303, 604
AoxI	GGCC	3 cut(s)	3, 31, 631
ApoI	RAATTY	3 cut(s)	360, 487, 735
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	25, 192
AvaII	GGWCC	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	2 cut(s)	398, 558
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	7 cut(s)	78, 83, 103, 391, 395, 438, 584
BciT130I	CCWGG	2 cut(s)	118, 552
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	430
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	693
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	694
BmcAI	AGTACT	2 cut(s)	109, 189
Bme1390I	CCNGG	2 cut(s)	118, 552
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	5 cut(s)	297, 428, 526, 557, 583
BmrFI	CCNGG	2 cut(s)	118, 552
BmsI	GCATC	2 cut(s)	184, 206
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	447
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	118, 552
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	4 cut(s)	89, 94, 126, 383
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	5 cut(s)	26, 450, 580, 660, 708
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	129
BseYI	CCCAGC	2 cut(s)	463, 727
Bsh1236I	CGCG	1 cut(s)	692
BshFI	GGCC	3 cut(s)	5, 33, 633
BshNI	GGYRCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	2 cut(s)	445, 517
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	445, 517
BsnI	GGCC	3 cut(s)	5, 33, 633
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	398, 558
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	295, 596, 623
Bsp1720I	GCTNAGC	1 cut(s)	436
BspACI	CCGC	5 cut(s)	150, 180, 440, 502, 692
BspANI	GGCC	3 cut(s)	5, 33, 633
BspCNI	CTCAG	5 cut(s)	27, 449, 579, 661, 709
BspFNI	CGCG	1 cut(s)	692
BspLI	GGNNCC	5 cut(s)	297, 428, 526, 557, 583
BspPI	GGATC	3 cut(s)	290, 303, 604
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	3 cut(s)	295, 596, 623
BssNI	GRCGYC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	118, 552
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	427
BstAFI	CTTAAG	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	5 cut(s)	35, 436, 566, 669, 717
BstF5I	GGATG	4 cut(s)	89, 94, 126, 383
BstFNI	CGCG	1 cut(s)	692
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	298, 599, 626
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	295, 596, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	2 cut(s)	118, 552
BstNSI	RCATGY	3 cut(s)	71, 378, 655
BstSCI	CCNGG	2 cut(s)	116, 550
BstUI	CGCG	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 33, 633
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	89, 94, 126, 383
BtsIMutI	CAGTG	2 cut(s)	454, 585
Cac8I	GCNNGC	1 cut(s)	690
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	40, 108, 188, 280
CviAII	CATG	4 cut(s)	68, 375, 542, 652
CviQI	GTAC	4 cut(s)	40, 108, 188, 280
DdeI	CTNAG	5 cut(s)	35, 436, 566, 669, 717
DinI	GGCGCC	1 cut(s)	428
DpnI	GATC	3 cut(s)	297, 598, 625
DpnII	GATC	3 cut(s)	295, 596, 623
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	398, 558
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	396
EcoRI	GAATTC	2 cut(s)	487, 735
EcoRII	CCWGG	2 cut(s)	116, 550
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	398, 558
EgeI	GGCGCC	1 cut(s)	428
EheI	GGCGCC	1 cut(s)	428
FaeI	CATG	4 cut(s)	71, 378, 545, 655
FaiI	YATR	7 cut(s)	69, 78, 237, 311, 376, 543, 653
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	2 cut(s)	445, 517
FatI	CATG	4 cut(s)	67, 374, 541, 651
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	4 cut(s)	96, 101, 133, 370
FriOI	GRGCYC	2 cut(s)	398, 558
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	1 cut(s)	693
GsaI	CCCAGC	2 cut(s)	467, 731
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	5, 33, 633
HapII	CCGG	1 cut(s)	484
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	427
Hin1II	CATG	4 cut(s)	71, 378, 545, 655
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	146, 458, 530
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	2 cut(s)	25, 192
Hpy166II	GTNNAC	2 cut(s)	291, 372
Hpy188I	TCNGA	4 cut(s)	400, 529, 670, 718
Hpy188III	TCNNGA	5 cut(s)	25, 143, 492, 568, 612
Hpy8I	GTNNAC	2 cut(s)	291, 372
HpyAV	CCTTC	4 cut(s)	10, 467, 656, 703
HpyCH4V	TGCA	6 cut(s)	74, 101, 197, 305, 688, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	5 cut(s)	35, 436, 566, 669, 717
Hsp92I	GRCGYC	1 cut(s)	427
Hsp92II	CATG	4 cut(s)	71, 378, 545, 655
HspAI	GCGC	1 cut(s)	427
KasI	GGCGCC	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	295, 596, 623
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	2 cut(s)	530, 561
LweI	GCATC	2 cut(s)	184, 206
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	654
MalI	GATC	3 cut(s)	297, 598, 625
MboI	GATC	3 cut(s)	295, 596, 623
MboII	GAAGA	3 cut(s)	403, 507, 583
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	398, 558
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	173, 360, 487, 735
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	467, 539
MnlI	CCTC	5 cut(s)	30, 150, 547, 587, 712
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	168, 252, 285, 644, 745
MslI	CAYNNNNRTG	2 cut(s)	11, 119
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	2 cut(s)	118, 552
MvaI	CCWGG	2 cut(s)	118, 552
MvnI	CGCG	1 cut(s)	692
MwoI	GCNNNNNNNGC	1 cut(s)	698
NarI	GGCGCC	1 cut(s)	427
NdeII	GATC	3 cut(s)	295, 596, 623
NlaIII	CATG	4 cut(s)	71, 378, 545, 655
NlaIV	GGNNCC	5 cut(s)	297, 428, 526, 557, 583
NmuCI	GTSAC	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	3 cut(s)	71, 378, 655
OliI	CACNNNNGTG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	2 cut(s)	374, 651
PciSI	GCTCTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	2 cut(s)	466, 538
PluTI	GGCGCC	1 cut(s)	430
PpsI	GAGTC	2 cut(s)	466, 538
PscI	ACATGT	2 cut(s)	374, 651
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	116, 550
PspFI	CCCAGC	2 cut(s)	463, 727
PspGI	CCWGG	2 cut(s)	116, 550
PspN4I	GGNNCC	5 cut(s)	297, 428, 526, 557, 583
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	4 cut(s)	41, 109, 189, 281
RsaNI	GTAC	4 cut(s)	40, 108, 188, 280
RseI	CAYNNNNRTG	2 cut(s)	11, 119
SacI	GAGCTC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	5 cut(s)	168, 252, 285, 644, 745
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	3 cut(s)	295, 596, 623
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	2 cut(s)	109, 189
SchI	GAGTC	2 cut(s)	467, 539
ScrFI	CCNGG	2 cut(s)	118, 552
SduI	GDGCHC	2 cut(s)	398, 558
SfaNI	GCATC	2 cut(s)	184, 206
SfoI	GGCGCC	1 cut(s)	428
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	11, 119
SmlI	CTYRAG	2 cut(s)	141, 251
SmoI	CTYRAG	2 cut(s)	141, 251
Sse9I	AATT	4 cut(s)	173, 360, 487, 735
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	5 cut(s)	150, 180, 440, 502, 692
SspDI	GGCGCC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	116, 550
TaqI	TCGA	2 cut(s)	57, 223
TasI	AATT	4 cut(s)	173, 360, 487, 735
TatI	WGTACW	3 cut(s)	107, 187, 279
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	5 cut(s)	168, 252, 285, 644, 745
Tru9I	TTAA	5 cut(s)	168, 252, 285, 644, 745
TscAI	CASTG	2 cut(s)	454, 592
TseFI	GTSAC	1 cut(s)	654
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	2 cut(s)	630, 728
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	454, 592
Van91I	CCANNNNNTGG	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	3 cut(s)	360, 487, 735
XceI	RCATGY	3 cut(s)	71, 378, 655
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	2 cut(s)	109, 189
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.