Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

14962482 .. 14963736

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTACAAAGGTGAAGGGGCTCTTGAAAGGCCTGAAACACTTTTCGCAAATGTTTGATGAGAAAAATGATGACATACAAATTGGATTTCCCACAGATGTTAAGCATGTTGGGCACATTGGATGGGATGGTCCATCTACAAATAGTACTCCGAGCTGGATGAATGAGTTCAAAGGCGCTTCTCCAGAAGTCTCATCCCCTGGGCAATTGACTGTTAAAGAACTGTCCTCCCAAGATATGCATAAAACAAGCCTTGGTGCCCAAGAATTGGTGCAGCGAAATGACATTCCAAGGACTAGGCGTCATTCCACAGATGAATCTGAAGGTTCCCCAACCAAGAAGAGCTCTGATGGATCAAAGAAGCATTCTAGGCGCCACCGCTCCAAGGAAGGACCAATGGATTCTCCGTCTCGCGAGTCTCGAGAAGGTAGTAGCAGTCATTCAAGAAGAAGCCGGAATTCTAACAATCTTGGATTGGAATCCCCCTCACAAGACCCTCCTGGAATACCAAAGCAAAGGAAGAAAAAGGGGTCATCTGAAGGCGGGTCAGCGAGGTCATCAAGAAGGGCAAACAGATCAAAAGGCCAGAATTCTTTGACTGAGATTTCGTTGGAAGGTTCAGTGCATGGATCCAAGAGTGGAGAGAGTCCAGTGCACCCAGTTTTGGCAGAAGCAAAACGTTCCTCGGGCGGGAATAATGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

236

Amino Acids

25.47

Weight (kDa)

10.03

Isoelectric Point (pI)

76.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 372
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	381
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	379, 543, 690
AclI	AACGTT	1 cut(s)	679
AclWI	GGATC	3 cut(s)	361, 624, 637
AcsI	RAATTY	2 cut(s)	457, 589
AcuI	CTGAAG	2 cut(s)	342, 558
AcyI	GRCGYC	2 cut(s)	301, 373
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	268, 385, 664, 690
AgsI	TTSAA	3 cut(s)	28, 172, 444
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	2 cut(s)	199, 499
AluBI	AGCT	2 cut(s)	156, 345
AluI	AGCT	2 cut(s)	156, 345
Alw21I	GWGCWC	2 cut(s)	347, 657
Alw26I	GTCTC	3 cut(s)	196, 414, 423
Alw44I	GTGCAC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	361, 624, 637
Ama87I	CYCGRG	2 cut(s)	420, 685
AoxI	GGCC	2 cut(s)	31, 583
ApaLI	GTGCAC	1 cut(s)	653
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	457, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	179, 375
AspS9I	GGNCC	2 cut(s)	131, 392
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	2 cut(s)	420, 685
AvaII	GGWCC	2 cut(s)	131, 392
BaeGI	GKGCMC	3 cut(s)	117, 262, 657
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	257, 372
BanII	GRGCYC	2 cut(s)	24, 347
Bbv12I	GWGCWC	2 cut(s)	347, 657
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	4 cut(s)	117, 122, 142, 344
BciT130I	CCWGG	2 cut(s)	201, 501
BcoDI	GTCTC	3 cut(s)	196, 414, 423
BfaI	CTAG	2 cut(s)	297, 369
BfoI	RGCGCY	2 cut(s)	180, 376
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	201, 501
Bme18I	GGWCC	2 cut(s)	131, 392
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmeT110I	CYCGRG	2 cut(s)	420, 685
BmgT120I	GGNCC	2 cut(s)	131, 392
BmiI	GGNNCC	4 cut(s)	259, 328, 374, 631
BmrFI	CCNGG	2 cut(s)	201, 501
BmrI	ACTGGG	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	478
BsaHI	GRCGYC	2 cut(s)	301, 373
BsaJI	CCNNGG	6 cut(s)	199, 200, 253, 290, 384, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 385, 664, 690
Bse1I	ACTGG	2 cut(s)	650, 659
Bse8I	GATNNNNATC	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	201, 501
BseDI	CCNNGG	6 cut(s)	199, 200, 253, 290, 384, 684
BseGI	GGATG	4 cut(s)	128, 133, 165, 194
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	4 cut(s)	268, 385, 664, 690
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	650, 659
BseSI	GKGCMC	3 cut(s)	117, 262, 657
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	33, 585
BshNI	GGYRCC	2 cut(s)	257, 372
BsiHKAI	GWGCWC	2 cut(s)	347, 657
BsiHKCI	CYCGRG	2 cut(s)	420, 685
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	4 cut(s)	268, 385, 664, 690
BsmAI	GTCTC	3 cut(s)	196, 414, 423
BsmBI	CGTCTC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	33, 585
BsoBI	CYCGRG	2 cut(s)	420, 685
Bsp1286I	GDGCHC	5 cut(s)	24, 117, 262, 347, 657
Bsp143I	GATC	3 cut(s)	353, 575, 629
Bsp68I	TCGCGA	1 cut(s)	414
BspACI	CCGC	3 cut(s)	379, 543, 690
BspANI	GGCC	2 cut(s)	33, 585
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	259, 328, 374, 631
BspPI	GGATC	3 cut(s)	361, 624, 637
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	257, 372
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	650, 659
BssECI	CCNNGG	6 cut(s)	199, 200, 253, 290, 384, 684
BssMI	GATC	3 cut(s)	353, 575, 629
BssNI	GRCGYC	2 cut(s)	301, 373
BssT1I	CCWWGG	3 cut(s)	253, 290, 384
Bst2UI	CCWGG	2 cut(s)	201, 501
Bst4CI	ACNGT	2 cut(s)	214, 225
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	2 cut(s)	301, 373
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	4 cut(s)	128, 133, 165, 194
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	2 cut(s)	180, 376
BstHHI	GCGC	2 cut(s)	179, 375
BstKTI	GATC	3 cut(s)	356, 578, 632
BstMAI	GTCTC	3 cut(s)	196, 414, 423
BstMBI	GATC	3 cut(s)	353, 575, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 370
BstNI	CCWGG	2 cut(s)	201, 501
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	199, 499
BstSLI	GKGCMC	3 cut(s)	117, 262, 657
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	2 cut(s)	33, 585
BtsCI	GGATG	4 cut(s)	128, 133, 165, 194
BtsIMutI	CAGTG	2 cut(s)	627, 657
BtuMI	TCGCGA	1 cut(s)	414
CfoI	GCGC	2 cut(s)	179, 375
Cfr13I	GGNCC	2 cut(s)	131, 392
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	107, 626
CviJI	RGCY	8 cut(s)	5, 22, 33, 156, 252, 345, 453, 585
CviKI_1	RGCY	8 cut(s)	5, 22, 33, 156, 252, 345, 453, 585
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	600
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	3 cut(s)	355, 577, 631
DpnII	GATC	3 cut(s)	353, 575, 629
DriI	GACNNNNNGTC	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	3 cut(s)	253, 290, 384
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	24, 347
Eco47I	GGWCC	2 cut(s)	131, 392
Eco53kI	GAGCTC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	342, 558
Eco88I	CYCGRG	2 cut(s)	420, 685
EcoICRI	GAGCTC	1 cut(s)	345
EcoRI	GAATTC	2 cut(s)	457, 589
EcoRII	CCWGG	2 cut(s)	199, 499
EcoT14I	CCWWGG	3 cut(s)	253, 290, 384
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	24, 347
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	3 cut(s)	253, 290, 384
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	2 cut(s)	110, 629
FaiI	YATR	5 cut(s)	77, 108, 239, 243, 627
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	106, 625
FauI	CCCGC	2 cut(s)	536, 683
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	4 cut(s)	135, 140, 172, 181
FriOI	GRGCYC	2 cut(s)	24, 347
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	2 cut(s)	297, 369
GlaI	GCGC	2 cut(s)	178, 374
GluI	GCNGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	2 cut(s)	180, 376
HaeIII	GGCC	2 cut(s)	33, 585
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	179, 375
Hin1I	GRCGYC	2 cut(s)	301, 373
Hin1II	CATG	2 cut(s)	110, 629
Hin6I	GCGC	2 cut(s)	177, 373
HinP1I	GCGC	2 cut(s)	177, 373
HinfI	GANTC	5 cut(s)	317, 401, 416, 479, 646
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	655, 703
Hpy188I	TCNGA	4 cut(s)	153, 322, 349, 538
Hpy188III	TCNNGA	7 cut(s)	25, 185, 413, 420, 422, 444, 561
Hpy8I	GTNNAC	2 cut(s)	655, 703
HpyAV	CCTTC	7 cut(s)	10, 317, 383, 419, 533, 558, 608
HpyCH4III	ACNGT	2 cut(s)	214, 225
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	4 cut(s)	241, 274, 625, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 370
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	679
Hsp92I	GRCGYC	2 cut(s)	301, 373
Hsp92II	CATG	2 cut(s)	110, 629
HspAI	GCGC	2 cut(s)	177, 373
KasI	GGCGCC	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	353, 575, 629
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	297, 369
MaeII	ACGT	1 cut(s)	679
MalI	GATC	3 cut(s)	355, 577, 631
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	3 cut(s)	353, 575, 629
MboII	GAAGA	3 cut(s)	352, 459, 532
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	5 cut(s)	24, 117, 262, 347, 657
MluCI	AATT	5 cut(s)	81, 206, 266, 457, 589
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	425, 655
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	5 cut(s)	238, 496, 507, 546, 694
Mph1103I	ATGCAT	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	2 cut(s)	102, 216
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	201, 501
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	201, 501
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	112, 370
NarI	GGCGCC	1 cut(s)	373
NdeII	GATC	3 cut(s)	353, 575, 629
NlaIII	CATG	2 cut(s)	110, 629
NlaIV	GGNNCC	4 cut(s)	259, 328, 374, 631
NruI	TCGCGA	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	317, 401, 479
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	2 cut(s)	424, 654
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	2 cut(s)	424, 654
Psp124BI	GAGCTC	1 cut(s)	347
Psp1406I	AACGTT	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	199, 499
PspGI	CCWGG	2 cut(s)	199, 499
PspN4I	GGNNCC	4 cut(s)	259, 328, 374, 631
PspPI	GGNCC	2 cut(s)	131, 392
PsuI	RGATCY	1 cut(s)	629
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	102, 216
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	3 cut(s)	353, 575, 629
Sau96I	GGNCC	2 cut(s)	131, 392
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	2 cut(s)	425, 655
ScrFI	CCNGG	2 cut(s)	201, 501
SduI	GDGCHC	5 cut(s)	24, 117, 262, 347, 657
SetI	ASST	8 cut(s)	15, 158, 328, 347, 430, 557, 619, 682
SfoI	GGCGCC	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	131, 392
SlaI	CTCGAG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	5 cut(s)	81, 206, 266, 457, 589
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	379, 543, 690
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	297, 369
SstI	GAGCTC	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	199, 499
StyI	CCWWGG	3 cut(s)	253, 290, 384
TaaI	ACNGT	2 cut(s)	214, 225
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	81, 206, 266, 457, 589
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	317, 401, 479
Tru1I	TTAA	2 cut(s)	102, 216
Tru9I	TTAA	2 cut(s)	102, 216
TscAI	CASTG	2 cut(s)	627, 657
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	176, 330
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	627, 657
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	131, 392
XapI	RAATTY	2 cut(s)	457, 589
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	297, 369
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.