Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

22132461 .. 22135029

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1221500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAACCAAGGTGAAGGGCCTCTTGAAAGGCCTCAGATACATTTCGCAAATGTTTGATGATAAAGATGATGACATACAAATTGGATTTCCCACAGATGTTAAGCATGTTGCGCACATTGGATGGGATGGTCCGTCTACAAAAAGTACTCCGAGCTGGATGAATGATTTCAAAGGTGCTTCTCCGGAAGTCCCATCCACCGGGAAATTGACTGTTGAAGAATTGGCTTCCCAAGATATGCATAAAACAAGCCTTGCTGCCCAAGAATTGGTGCAGCAAAATGACATTCCAAGGTCTAGGCACCATTCCACAGGTGAATCTGAAGGTTCCCCAACCAAGAAGAGCTCTGATGGGTCAAAGAAGCATTCTAGGCGCCATCGCTCCAAGGAAGGAGCAATGGATACTCCATCTCATGAATCTAAAGAAGGTAGTAGCCGTCATTCAAGAAAAAGCCGGAATTCTAACAATCTTGGATCAGAATCACCCGGACAAGACCGTCCTGGAATACCAAAGCAAAGGAGGAAAAAGGGGTCATCTGAAGGTGGGTCATCGAGGTCATCAAGAAGGGCAAACAGATCAAAAGGCCAGAATTCTATGACTGATATTTCATTGGAAGGTTCAGAGCATGGATCATGCAAGAGTACCGAGAGTCCAATGCACCCCGTTTTCGCAGAAGCGAAAAGTTCTGAGGGGTTTTCTGGCGGGAATAACGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

240

Amino Acids

25.91

Weight (kDa)

9.56

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBD	PF00786	27 - 60	4.8e-06	P21-Rho-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc16I	TGCGCA	1 cut(s)	114
AccB1I	GGYRCC	2 cut(s)	300, 372
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	702
AclWI	GGATC	2 cut(s)	481, 637
AcsI	RAATTY	2 cut(s)	457, 589
AcuI	CTGAAG	2 cut(s)	342, 558
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	2 cut(s)	148, 643
AfiI	CCNNNNNNNGG	2 cut(s)	200, 268
AgsI	TTSAA	4 cut(s)	28, 172, 218, 444
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	156, 345
AluI	AGCT	2 cut(s)	156, 345
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	481, 637
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	19, 31, 583
ApeKI	GCWGC	2 cut(s)	257, 274
ApoI	RAATTY	2 cut(s)	457, 589
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	115, 375
AspS9I	GGNCC	2 cut(s)	19, 131
AsuC2I	CCSGG	2 cut(s)	202, 486
AsuHPI	GGTGA	3 cut(s)	25, 326, 474
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	300, 372
BanII	GRGCYC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	244, 286
BccI	CCATC	6 cut(s)	117, 122, 202, 344, 384, 415
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	394
BcnI	CCSGG	2 cut(s)	202, 486
BfaI	CTAG	2 cut(s)	297, 369
BfoI	RGCGCY	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	258, 275
BlsI	GCNGC	2 cut(s)	259, 276
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	3 cut(s)	202, 486, 501
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	19, 131
BmiI	GGNNCC	4 cut(s)	7, 302, 328, 374
BmrFI	CCNGG	3 cut(s)	202, 486, 501
BpuMI	CCSGG	2 cut(s)	202, 486
BsaBI	GATNNNNATC	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	9, 290, 384
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 268
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	9, 290, 384
BseGI	GGATG	4 cut(s)	128, 133, 165, 194
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	200, 268
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	49, 678
BseXI	GCAGC	2 cut(s)	244, 286
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	21, 33, 585
BshNI	GGYRCC	2 cut(s)	300, 372
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	4 cut(s)	185, 201, 454, 486
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	200, 268
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	21, 33, 585
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	473, 575, 629
BspACI	CCGC	1 cut(s)	702
BspANI	GGCC	3 cut(s)	21, 33, 585
BspCNI	CTCAG	2 cut(s)	48, 679
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	4 cut(s)	7, 302, 328, 374
BspPI	GGATC	2 cut(s)	481, 637
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	300, 372
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	9, 290, 384
BssMI	GATC	3 cut(s)	473, 575, 629
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	3 cut(s)	9, 290, 384
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	214, 497
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	35, 687
BstF5I	GGATG	4 cut(s)	128, 133, 165, 194
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	115, 375
BstKTI	GATC	3 cut(s)	476, 578, 632
BstMBI	GATC	3 cut(s)	473, 575, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 370
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	200, 484, 499
BstV1I	GCAGC	2 cut(s)	244, 286
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	21, 33, 585
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	4 cut(s)	128, 133, 165, 194
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	115, 375
Cfr13I	GGNCC	2 cut(s)	19, 131
Csp6I	GTAC	2 cut(s)	147, 642
CviAII	CATG	4 cut(s)	107, 413, 626, 633
CviJI	RGCY	9 cut(s)	21, 33, 156, 227, 252, 345, 435, 453, 585
CviKI_1	RGCY	9 cut(s)	21, 33, 156, 227, 252, 345, 435, 453, 585
CviQI	GTAC	2 cut(s)	147, 642
DdeI	CTNAG	2 cut(s)	35, 687
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	3 cut(s)	475, 577, 631
DpnII	GATC	3 cut(s)	473, 575, 629
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	3 cut(s)	9, 290, 384
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	342, 558
EcoICRI	GAGCTC	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRI	GAATTC	2 cut(s)	457, 589
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	3 cut(s)	9, 290, 384
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	3 cut(s)	9, 290, 384
FaeI	CATG	4 cut(s)	110, 416, 629, 636
FaiI	YATR	8 cut(s)	77, 108, 239, 243, 414, 596, 627, 634
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	106, 412, 625, 632
FauI	CCCGC	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	258, 275
FokI	GGATG	4 cut(s)	135, 140, 172, 181
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	258, 275
FspBI	CTAG	2 cut(s)	297, 369
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	2 cut(s)	114, 374
GluI	GCNGC	2 cut(s)	258, 275
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	21, 33, 585
HapII	CCGG	4 cut(s)	185, 201, 454, 486
HhaI	GCGC	2 cut(s)	115, 375
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	110, 416, 629, 636
Hin6I	GCGC	2 cut(s)	113, 373
HinP1I	GCGC	2 cut(s)	113, 373
HinfI	GANTC	4 cut(s)	317, 416, 479, 649
HpaII	CCGG	4 cut(s)	185, 201, 454, 486
HphI	GGTGA	3 cut(s)	25, 326, 474
Hpy166II	GTNNAC	2 cut(s)	138, 715
Hpy188I	TCNGA	8 cut(s)	38, 153, 322, 349, 478, 538, 622, 688
Hpy188III	TCNNGA	5 cut(s)	25, 185, 413, 444, 561
Hpy8I	GTNNAC	2 cut(s)	138, 715
HpyAV	CCTTC	7 cut(s)	10, 317, 383, 419, 533, 558, 608
HpyCH4III	ACNGT	2 cut(s)	214, 497
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	4 cut(s)	241, 274, 636, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 370
HpyF3I	CTNAG	2 cut(s)	35, 687
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	110, 416, 629, 636
HspAI	GCGC	2 cut(s)	113, 373
KasI	GGCGCC	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	473, 575, 629
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	386, 392
Lsp1109I	GCAGC	2 cut(s)	244, 286
MaeI	CTAG	2 cut(s)	297, 369
MaeII	ACGT	1 cut(s)	711
MalI	GATC	3 cut(s)	475, 577, 631
MboI	GATC	3 cut(s)	473, 575, 629
MboII	GAAGA	2 cut(s)	230, 352
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	6 cut(s)	81, 206, 221, 266, 457, 589
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	658
MnlI	CCTC	5 cut(s)	32, 44, 513, 546, 682
Mph1103I	ATGCAT	1 cut(s)	243
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	102
MspI	CCGG	4 cut(s)	185, 201, 454, 486
MspR9I	CCNGG	3 cut(s)	202, 486, 501
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	112, 370
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	202, 486
NdeII	GATC	3 cut(s)	473, 575, 629
NlaIII	CATG	4 cut(s)	110, 416, 629, 636
NlaIV	GGNNCC	4 cut(s)	7, 302, 328, 374
NsbI	TGCGCA	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	335
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	317, 416, 479
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	259, 276
PleI	GAGTC	1 cut(s)	657
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	4 cut(s)	7, 302, 328, 374
PspPI	GGNCC	2 cut(s)	19, 131
RsaI	GTAC	2 cut(s)	148, 643
RsaNI	GTAC	2 cut(s)	147, 642
SacI	GAGCTC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	258, 275
Sau3AI	GATC	3 cut(s)	473, 575, 629
Sau96I	GGNCC	2 cut(s)	19, 131
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	3 cut(s)	202, 486, 501
SduI	GDGCHC	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	6 cut(s)	81, 206, 221, 266, 457, 589
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	702
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	297, 369
SstI	GAGCTC	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	200, 484, 499
StyI	CCWWGG	3 cut(s)	9, 290, 384
TaaI	ACNGT	2 cut(s)	214, 497
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	1 cut(s)	551
TasI	AATT	6 cut(s)	81, 206, 221, 266, 457, 589
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	317, 416, 479
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	2 cut(s)	257, 274
TspDTI	ATGAA	3 cut(s)	176, 429, 597
TspGWI	ACGGA	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	457, 589
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	297, 369
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.