Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

7628163 .. 7630383

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCACAAAGGTGAAGGGTCTGTTGAAAGGCCTGAGGTACATTACACAGATATTTGAGGAAAAGGATCAAGAAATACAAATTGGCTTTCCCACAGATGTAAAGCATGTTGCACATATTGGATGGGATGGTCCATCTGCAAATAGTACTCCCACCTGGATGAGCGAGTTCAAATCTCCTCAAGAATCTGCAGGGCAACTTGCTGTTAAAGAATTGTCTGCAAAAGATGTTGGACTGCTTGTACCCATTTTCTGTTGTCATAATCTTAATATAGTACTTGATGCATCACCTGATGTTGTTGTAATGTTGCTTCGATTAGACAATCATAGACCCCAAGAGCTTAAGCAGTTAGAGAATAAGCCAACAATGTACATTAAGTTTACTGATCCTTTTGCAGATATAAATAAAACAGGACTTTCTATTGCCCAATCAATGGCACACCTGAACGAAATTCCAAAGTCTACATGTTCCCCATCCAAGAAGAGCTCTGATGGAAAAAGCAAAAAGAGTTCTAGGCGCCATCGCTCAGCGGAAGCCAGTGGAGTGGAGTCCCCAGCACGAGAAGGTAGTAGCCGGAATTCAAGAAGAAGCCGCAACTCTAATAATAGTCTTGGCTCAGAGTCCCCCTCACATGACCCACCTGGGCTCCCAAAACTCCGGAAGAAAAAGGGTTCCACTGATGGAGGATCAACAAAATCATCAAGAAAGCCACGATCTAAAGGCCAGAATTCATTAACTGATATGTCACTTGAAGGTTCTGAAAATGGTAGTCCAATGCACACGGCTTTTGCACGAGAGAAGGGTTCTGAGGTAATCCCAGCAGGAATTCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

278

Amino Acids

30.25

Weight (kDa)

9.57

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	657
AciI	CCGC	2 cut(s)	530, 592
AclWI	GGATC	3 cut(s)	75, 380, 694
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	450, 577, 727, 825
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	5 cut(s)	41, 148, 243, 276, 371
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	28, 172, 582, 752
AjnI	CCWGG	2 cut(s)	155, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	340, 486
AluI	AGCT	2 cut(s)	340, 486
Alw21I	GWGCWC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	75, 380, 694
Aor13HI	TCCGGA	1 cut(s)	657
AoxI	GGCC	3 cut(s)	3, 31, 721
ApoI	RAATTY	4 cut(s)	450, 577, 727, 825
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	25, 279
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	488, 648
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	2 cut(s)	558, 792
Bbv12I	GWGCWC	1 cut(s)	488
BccI	CCATC	7 cut(s)	117, 122, 142, 481, 485, 528, 674
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	2 cut(s)	157, 642
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	520
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	593
BmcAI	AGTACT	2 cut(s)	148, 276
Bme1390I	CCNGG	2 cut(s)	157, 642
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	3 cut(s)	518, 647, 673
BmrFI	CCNGG	2 cut(s)	157, 642
BmsI	GCATC	2 cut(s)	271, 293
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
Bpu1102I	GCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	537
Bse21I	CCTNAGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	157, 642
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	4 cut(s)	128, 133, 165, 473
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	4 cut(s)	26, 540, 630, 798
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	168
BseYI	CCCAGC	2 cut(s)	553, 817
BshFI	GGCC	3 cut(s)	5, 33, 723
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	574, 658
BslFI	GGGAC	2 cut(s)	535, 607
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	535, 607
BsnI	GGCC	3 cut(s)	5, 33, 723
Bsp1286I	GDGCHC	2 cut(s)	488, 648
Bsp13I	TCCGGA	1 cut(s)	657
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	67, 385, 686, 713
Bsp1720I	GCTNAGC	1 cut(s)	526
BspACI	CCGC	2 cut(s)	530, 592
BspANI	GGCC	3 cut(s)	5, 33, 723
BspCNI	CTCAG	4 cut(s)	27, 539, 629, 799
BspEI	TCCGGA	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	518, 647, 673
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	3 cut(s)	75, 380, 694
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	4 cut(s)	67, 385, 686, 713
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	2 cut(s)	558, 792
Bst2BI	CACGAG	2 cut(s)	558, 792
Bst2UI	CCWGG	2 cut(s)	157, 642
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	517
BstAFI	CTTAAG	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	35, 526, 616, 807
BstF5I	GGATG	4 cut(s)	128, 133, 165, 473
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	4 cut(s)	70, 388, 689, 716
BstMBI	GATC	4 cut(s)	67, 385, 686, 713
BstNI	CCWGG	2 cut(s)	157, 642
BstNSI	RCATGY	2 cut(s)	110, 468
BstSCI	CCNGG	2 cut(s)	155, 640
BstSFI	CTRYAG	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	544
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 33, 723
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	128, 133, 165, 473
BtsIMutI	CAGTG	2 cut(s)	544, 675
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	5 cut(s)	40, 147, 242, 275, 370
CviAII	CATG	3 cut(s)	107, 465, 632
CviQI	GTAC	5 cut(s)	40, 147, 242, 275, 370
DdeI	CTNAG	4 cut(s)	35, 526, 616, 807
DinI	GGCGCC	1 cut(s)	518
DpnI	GATC	4 cut(s)	69, 387, 688, 715
DpnII	GATC	4 cut(s)	67, 385, 686, 713
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	488, 648
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	486
EcoRI	GAATTC	3 cut(s)	577, 727, 825
EcoRII	CCWGG	2 cut(s)	155, 640
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	2 cut(s)	488, 648
EgeI	GGCGCC	1 cut(s)	518
EheI	GGCGCC	1 cut(s)	518
FaeI	CATG	3 cut(s)	110, 468, 635
FaqI	GGGAC	2 cut(s)	535, 607
FatI	CATG	3 cut(s)	106, 464, 631
FblI	GTMKAC	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	592
FokI	GGATG	4 cut(s)	135, 140, 172, 460
FriOI	GRGCYC	2 cut(s)	488, 648
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	592
GsaI	CCCAGC	2 cut(s)	557, 821
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	3 cut(s)	5, 33, 723
HapII	CCGG	2 cut(s)	574, 658
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	110, 468, 635
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	185, 548, 620
HpaII	CCGG	2 cut(s)	574, 658
HphI	GGTGA	2 cut(s)	25, 279
Hpy166II	GTNNAC	2 cut(s)	381, 462
Hpy188I	TCNGA	4 cut(s)	490, 619, 760, 808
Hpy188III	TCNNGA	5 cut(s)	71, 182, 582, 658, 702
Hpy8I	GTNNAC	2 cut(s)	381, 462
HpyAV	CCTTC	4 cut(s)	10, 557, 746, 793
HpyCH4V	TGCA	8 cut(s)	113, 140, 191, 221, 284, 395, 778, 791
HpyF3I	CTNAG	4 cut(s)	35, 526, 616, 807
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	3 cut(s)	110, 468, 635
HspAI	GCGC	1 cut(s)	517
KasI	GGCGCC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	657
Kzo9I	GATC	4 cut(s)	67, 385, 686, 713
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	651
LweI	GCATC	2 cut(s)	271, 293
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	744
MalI	GATC	4 cut(s)	69, 387, 688, 715
MboI	GATC	4 cut(s)	67, 385, 686, 713
MboII	GAAGA	3 cut(s)	493, 597, 673
MhlI	GDGCHC	2 cut(s)	488, 648
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	81, 212, 450, 577, 727, 825
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	517
MlyI	GAGTC	2 cut(s)	557, 629
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	30, 52, 189, 637, 677, 802
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	286
MroI	TCCGGA	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	207, 267, 342, 375, 734, 835
MslI	CAYNNNNRTG	2 cut(s)	11, 158
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	2 cut(s)	574, 658
MspR9I	CCNGG	2 cut(s)	157, 642
MvaI	CCWGG	2 cut(s)	157, 642
NarI	GGCGCC	1 cut(s)	517
NdeII	GATC	4 cut(s)	67, 385, 686, 713
NlaIII	CATG	3 cut(s)	110, 468, 635
NlaIV	GGNNCC	3 cut(s)	518, 647, 673
NmuCI	GTSAC	1 cut(s)	744
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	110, 468
OliI	CACNNNNGTG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	593
PleI	GAGTC	2 cut(s)	556, 628
PluTI	GGCGCC	1 cut(s)	520
PpsI	GAGTC	2 cut(s)	556, 628
PscI	ACATGT	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	155, 640
PspFI	CCCAGC	2 cut(s)	553, 817
PspGI	CCWGG	2 cut(s)	155, 640
PspN4I	GGNNCC	3 cut(s)	518, 647, 673
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	5 cut(s)	41, 148, 243, 276, 371
RsaNI	GTAC	5 cut(s)	40, 147, 242, 275, 370
RseI	CAYNNNNRTG	2 cut(s)	11, 158
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	6 cut(s)	207, 267, 342, 375, 734, 835
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	4 cut(s)	67, 385, 686, 713
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	2 cut(s)	148, 276
SchI	GAGTC	2 cut(s)	557, 629
ScrFI	CCNGG	2 cut(s)	157, 642
SduI	GDGCHC	2 cut(s)	488, 648
SfaNI	GCATC	2 cut(s)	271, 293
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	518
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	11, 158
SmlI	CTYRAG	2 cut(s)	180, 341
SmoI	CTYRAG	2 cut(s)	180, 341
Sse9I	AATT	6 cut(s)	81, 212, 450, 577, 727, 825
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	2 cut(s)	530, 592
SspDI	GGCGCC	1 cut(s)	516
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	155, 640
TaqI	TCGA	1 cut(s)	313
TasI	AATT	6 cut(s)	81, 212, 450, 577, 727, 825
TatI	WGTACW	3 cut(s)	146, 274, 369
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	6 cut(s)	207, 267, 342, 375, 734, 835
Tru9I	TTAA	6 cut(s)	207, 267, 342, 375, 734, 835
TscAI	CASTG	2 cut(s)	544, 682
TseFI	GTSAC	1 cut(s)	744
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	2 cut(s)	720, 818
TspRI	CASTG	2 cut(s)	544, 682
Van91I	CCANNNNNTGG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	4 cut(s)	450, 577, 727, 825
XceI	RCATGY	2 cut(s)	110, 468
XmiI	GTMKAC	1 cut(s)	461
XspI	CTAG	1 cut(s)	513
ZrmI	AGTACT	2 cut(s)	148, 276
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.