Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

10723479 .. 10725731

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTGCTTCGATTAGACAATCATAGAAACCAAGAGCTTAAGCAGTTAGAGAACAAGCCAACAATGTACATTAAGTTTACGGATCCTTTTGCAGATATAAATAAAACAGGACTTTCTATTGCCCAATCAATGGCACACCTGAACGAAATTCCAAAGTCTACATGTTCCCCATCCAAGAAGAGCTCTGATGGAAAAAGCAAAAAGAGTTCTAGGCGCCATCGCTCAGCGGAAGCCAGTGGAGTGGAGTCCCCAGCACGAGAAGGTAGTAGCCGGAATTCAAGAAGAAGCCGCAACTCTAATAATAGTCTTGGCTCCGAGTCCCCCTCACATGACCCACCTGGGCTCCCAAAACTCCGGAAGAAAAAGGGTTCCACTGATGGAGGATCAACAAAATCATCAAGAAAGCCACGATCTAAAGGCCAGACTTCATTAACTGACATGTCACTTGAAGGTTCTGAGAATGGTAGTCCAATGCATGCGGCTTTTGCACGAGAGAAGGGTTCTGAGGTAATCCCAGCAGGAATTCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

177

Amino Acids

19.2

Weight (kDa)

10.22

Isoelectric Point (pI)

73.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	354
AciI	CCGC	3 cut(s)	227, 289, 479
AclWI	GGATC	3 cut(s)	77, 90, 391
AcsI	RAATTY	3 cut(s)	147, 274, 522
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	2 cut(s)	161, 438
AgsI	TTSAA	2 cut(s)	279, 449
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	37, 183
AluI	AGCT	2 cut(s)	37, 183
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	77, 90, 391
Aor13HI	TCCGGA	1 cut(s)	354
AoxI	GGCC	1 cut(s)	418
ApoI	RAATTY	3 cut(s)	147, 274, 522
AspLEI	GCGC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	185, 345
BauI	CACGAG	2 cut(s)	255, 489
Bbv12I	GWGCWC	1 cut(s)	185
BccI	CCATC	4 cut(s)	178, 182, 225, 371
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	217
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	289, 480
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	2 cut(s)	290, 481
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	5 cut(s)	84, 215, 313, 344, 370
BmrFI	CCNGG	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu1102I	GCTNAGC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	237, 447, 495
BseNI	ACTGG	1 cut(s)	234
BseYI	CCCAGC	2 cut(s)	250, 514
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	271, 355
BslFI	GGGAC	2 cut(s)	232, 304
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	232, 304
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	185, 345
Bsp13I	TCCGGA	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	82, 383, 410
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	227, 289, 479
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	3 cut(s)	236, 448, 496
BspEI	TCCGGA	1 cut(s)	354
BspLI	GGNNCC	5 cut(s)	84, 215, 313, 344, 370
BspPI	GGATC	3 cut(s)	77, 90, 391
BspQI	GCTCTTC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	82, 383, 410
BssNI	GRCGYC	1 cut(s)	214
BssSI	CACGAG	2 cut(s)	255, 489
Bst2BI	CACGAG	2 cut(s)	255, 489
Bst2UI	CCWGG	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	214
BstAFI	CTTAAG	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	223, 456, 504
BstF5I	GGATG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	85, 386, 413
BstMBI	GATC	3 cut(s)	82, 383, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	3 cut(s)	165, 442, 479
BstSCI	CCNGG	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	241, 372
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	162, 329, 439, 476
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	223, 456, 504
DinI	GGCGCC	1 cut(s)	215
DpnI	GATC	3 cut(s)	84, 385, 412
DpnII	GATC	3 cut(s)	82, 383, 410
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	185, 345
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoRI	GAATTC	2 cut(s)	274, 522
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	2 cut(s)	185, 345
EgeI	GGCGCC	1 cut(s)	215
EheI	GGCGCC	1 cut(s)	215
FaeI	CATG	4 cut(s)	165, 332, 442, 479
FaiI	YATR	7 cut(s)	24, 98, 163, 330, 440, 477, 528
FaqI	GGGAC	2 cut(s)	232, 304
FatI	CATG	4 cut(s)	161, 328, 438, 475
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	289, 480
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	2 cut(s)	185, 345
Fsp4HI	GCNGC	2 cut(s)	289, 480
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	289, 480
GsaI	CCCAGC	2 cut(s)	254, 518
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	2 cut(s)	271, 355
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	165, 332, 442, 479
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	245, 317
HpaII	CCGG	2 cut(s)	271, 355
Hpy166II	GTNNAC	2 cut(s)	78, 159
Hpy188I	TCNGA	4 cut(s)	187, 316, 457, 505
Hpy188III	TCNNGA	3 cut(s)	279, 355, 399
Hpy8I	GTNNAC	2 cut(s)	78, 159
HpyAV	CCTTC	3 cut(s)	254, 443, 490
HpyCH4V	TGCA	3 cut(s)	92, 475, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	223, 456, 504
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	165, 332, 442, 479
HspAI	GCGC	1 cut(s)	214
KasI	GGCGCC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	82, 383, 410
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	317, 348
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	84, 385, 412
MboI	GATC	3 cut(s)	82, 383, 410
MboII	GAAGA	3 cut(s)	190, 294, 370
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	185, 345
MluCI	AATT	3 cut(s)	147, 274, 522
Mly113I	GGCGCC	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	254, 326
MnlI	CCTC	3 cut(s)	334, 374, 499
Mph1103I	ATGCAT	1 cut(s)	477
MroI	TCCGGA	1 cut(s)	354
MseI	TTAA	4 cut(s)	39, 72, 431, 532
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	271, 355
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	485
NarI	GGCGCC	1 cut(s)	214
NdeII	GATC	3 cut(s)	82, 383, 410
NlaIII	CATG	4 cut(s)	165, 332, 442, 479
NlaIV	GGNNCC	5 cut(s)	84, 215, 313, 344, 370
NmuCI	GTSAC	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	3 cut(s)	165, 442, 479
PaeI	GCATGC	1 cut(s)	479
PciI	ACATGT	2 cut(s)	161, 438
PciSI	GCTCTTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	290, 481
PleI	GAGTC	2 cut(s)	253, 325
PluTI	GGCGCC	1 cut(s)	217
PpsI	GAGTC	2 cut(s)	253, 325
PscI	ACATGT	2 cut(s)	161, 438
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	2 cut(s)	250, 514
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	5 cut(s)	84, 215, 313, 344, 370
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	39, 72, 431, 532
SatI	GCNGC	2 cut(s)	289, 480
Sau3AI	GATC	3 cut(s)	82, 383, 410
SchI	GAGTC	2 cut(s)	254, 326
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	185, 345
SetI	ASST	7 cut(s)	39, 141, 185, 265, 340, 454, 510
SfoI	GGCGCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	3 cut(s)	147, 274, 522
SsiI	CCGC	3 cut(s)	227, 289, 479
SspDI	GGCGCC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	337
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	147, 274, 522
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	2 cut(s)	291, 482
Tru1I	TTAA	4 cut(s)	39, 72, 431, 532
Tru9I	TTAA	4 cut(s)	39, 72, 431, 532
TscAI	CASTG	2 cut(s)	241, 379
TseFI	GTSAC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	417, 515
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	241, 379
Van91I	CCANNNNNTGG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	3 cut(s)	147, 274, 522
XceI	RCATGY	3 cut(s)	165, 442, 479
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.