Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

3434681 .. 3436941

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCACAAAGGTGAAGGGTCTCTTGAAAGGCCTGAGGTACATTTCACACATATTCGAGGAAAAAGATCAAGAAATACAAATTGGCTTCCCCACCGATGTAAAGCATGTTGCACATATTGGATGGGATGGTCCATCTGCAAATAGTACTCCCAGCTGGATGACCGAGTTCAAATCTCCTCAAGATTCCGCAGGGCAAGTTGCTGTTAAAGAATTATCCGCCAAAGATATAAATAGAGGTGGACTGTCTATTGCTGCCCAAGAACTGGTGCATCTGAATGACATTCCAAGGTCTACAAGTTCCCCAGCCAAGAAGGATGGAAAATCCAAAAAGAGTTCTAGGCGCCATCGTTCAACGGAAGTCAGTGGAATGGAGTCCCCAGCCCGAGAAGGTAGTAGCCGGAATTCAAGAAGAAGCCGCAACTCTACTACTAGTCTTGGCTCCGAGTCCCCCTCATATGACCTGCCTGTGATCCCAAAACTCCGGAGGAAAAAAGGTTCAACAGGTTCCACTGATGGAGGATCGTCTAAATCATCTAGAAGGCCACGATCTAAAGGCCAGAATTCATTACCTGACATGTCACTTGAAGGTTCTGAGAATGGTAGTCCAATGCACTCGGCTTTTGCAGGAGGGAAGGGTTCTGAGATTATCCCAGCAGGGATTCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

224

Amino Acids

23.88

Weight (kDa)

10.03

Isoelectric Point (pI)

79.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	3 cut(s)	189, 219, 418
AclWI	GGATC	2 cut(s)	466, 529
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	403, 562
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	2 cut(s)	41, 148
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	6 cut(s)	28, 172, 354, 408, 501, 587
AhlI	ACTAGT	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AleI	CACNNNNGTG	1 cut(s)	11
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	466, 529
Ama87I	CYCGRG	1 cut(s)	384
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	4 cut(s)	3, 31, 542, 556
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	403, 562
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	6 cut(s)	117, 122, 142, 311, 354, 509
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	339, 432, 537
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	255, 418
BlsI	GCNGC	2 cut(s)	256, 419
BmcAI	AGTACT	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	3 cut(s)	344, 442, 508
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	128, 133, 165, 322
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	26, 585, 633
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	4 cut(s)	152, 304, 379, 652
BshFI	GGCC	4 cut(s)	5, 33, 544, 558
BshNI	GGYRCC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	400, 484
BslFI	GGGAC	2 cut(s)	361, 433
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	361, 433
BsnI	GGCC	4 cut(s)	5, 33, 544, 558
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	67, 471, 521, 548
BspACI	CCGC	3 cut(s)	189, 219, 418
BspANI	GGCC	4 cut(s)	5, 33, 544, 558
BspCNI	CTCAG	3 cut(s)	27, 586, 634
BspEI	TCCGGA	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	344, 442, 508
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	466, 529
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	4 cut(s)	67, 471, 521, 548
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	35, 594, 642
BstF5I	GGATG	4 cut(s)	128, 133, 165, 322
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	4 cut(s)	70, 474, 524, 551
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	67, 471, 521, 548
BstNSI	RCATGY	2 cut(s)	110, 580
BstV1I	GCAGC	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	5, 33, 544, 558
BtsCI	GGATG	4 cut(s)	128, 133, 165, 322
BtsIMutI	CAGTG	2 cut(s)	370, 510
BveI	ACCTGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	40, 147
CviAII	CATG	2 cut(s)	107, 577
CviQI	GTAC	2 cut(s)	40, 147
DdeI	CTNAG	3 cut(s)	35, 594, 642
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	4 cut(s)	69, 473, 523, 550
DpnII	GATC	4 cut(s)	67, 471, 521, 548
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	2 cut(s)	403, 562
EcoT14I	CCWWGG	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	110, 580
FaiI	YATR	8 cut(s)	53, 108, 117, 230, 457, 459, 578, 666
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	2 cut(s)	361, 433
FatI	CATG	2 cut(s)	106, 576
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	255, 418
FokI	GGATG	4 cut(s)	135, 140, 172, 329
Fsp4HI	GCNGC	2 cut(s)	255, 418
FspBI	CTAG	3 cut(s)	339, 432, 537
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	255, 418
GsaI	CCCAGC	4 cut(s)	156, 308, 383, 656
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	4 cut(s)	5, 33, 544, 558
HapII	CCGG	2 cut(s)	400, 484
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	110, 580
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	185, 374, 446, 661
HpaII	CCGG	2 cut(s)	400, 484
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	242, 294
Hpy188I	TCNGA	4 cut(s)	276, 445, 595, 643
Hpy188III	TCNNGA	6 cut(s)	25, 71, 182, 408, 484, 537
Hpy8I	GTNNAC	2 cut(s)	242, 294
HpyAV	CCTTC	6 cut(s)	10, 307, 383, 534, 581, 628
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	113, 140, 271, 613, 626
HpyF3I	CTNAG	3 cut(s)	35, 594, 642
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	110, 580
HspAI	GCGC	1 cut(s)	343
KasI	GGCGCC	1 cut(s)	342
Kpn2I	TCCGGA	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	67, 471, 521, 548
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	339, 432, 537
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	4 cut(s)	69, 473, 523, 550
MboI	GATC	4 cut(s)	67, 471, 521, 548
MboII	GAAGA	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	81, 212, 403, 562
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	2 cut(s)	383, 455
MnlI	CCTC	8 cut(s)	30, 52, 189, 230, 463, 480, 512, 623
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	207, 670
MslI	CAYNNNNRTG	2 cut(s)	11, 276
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	400, 484
NarI	GGCGCC	1 cut(s)	343
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	67, 471, 521, 548
NlaIII	CATG	2 cut(s)	110, 580
NlaIV	GGNNCC	3 cut(s)	344, 442, 508
NmeAIII	GCCGAG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	579
NspI	RCATGY	2 cut(s)	110, 580
OliI	CACNNNNGTG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	185, 661
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	256, 419
PleI	GAGTC	2 cut(s)	382, 454
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	2 cut(s)	382, 454
PscI	ACATGT	1 cut(s)	576
PspFI	CCCAGC	4 cut(s)	152, 304, 379, 652
PspN4I	GGNNCC	3 cut(s)	344, 442, 508
PspPI	GGNCC	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	41, 148
RsaNI	GTAC	2 cut(s)	40, 147
RseI	CAYNNNNRTG	2 cut(s)	11, 276
SaqAI	TTAA	2 cut(s)	207, 670
SatI	GCNGC	2 cut(s)	255, 418
Sau3AI	GATC	4 cut(s)	67, 471, 521, 548
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	2 cut(s)	383, 455
SfaNI	GCATC	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	11, 276
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	4 cut(s)	81, 212, 403, 562
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	189, 219, 418
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	3 cut(s)	339, 432, 537
StuI	AGGCCT	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	4 cut(s)	81, 212, 403, 562
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	185, 661
Tru1I	TTAA	2 cut(s)	207, 670
Tru9I	TTAA	2 cut(s)	207, 670
TscAI	CASTG	2 cut(s)	370, 517
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	2 cut(s)	555, 653
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	370, 517
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	403, 562
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	2 cut(s)	110, 580
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	3 cut(s)	339, 432, 537
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.