Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

2987885 .. 2990330

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAACCAAGGTGAAGGGCCTCTTGAAAGGCCTAAGATACATTTCACATATGTTTGAAGAGAAAGATGATGAAATACAAATTGGCTTTCCCACGGATGTAAAGCATGTTGCACACATTGGATGGGAAGGTCCTTCTGCAAATAGTACGCCGAGCTGGATGAACGATTTCAAATCTTCTCCTGAAGTCTCATCCGCTGGGCAACTGGCTGTTAAAGAATTGTCCTCCCAAGATATGCATAAACCTGGCCAACAATTGGTGGTGCATCGAAGTGACATTCCAAGGTCGAGGCGCCATTCGCCTACAGATGAACCTGAAGGTTCTCCCACCAAGAAGATCTCTGATGGACCAAAGAAGCATTCTAGGCGCCACCGCTCCAAGGATGGAGTAATGGATTCCCCTTCTCGAGAGGCTAAAGAAGGTAGTAGCCGTCATTCAAGAAGCAGGAGGAATTCTAACAACCTTGGATCTGAATCTCCCTCACAAGATCCACCTGGGATACCAAAACAAAGGAGGAAAAAGGGTTCCTCTGAAAGCGGGTCAGCAAGATCATCAAGAAGGTCATCAAGATCCAAAGGCCAGAATTCTATGACAGATATTTCATTTGAAGGTTCAGAGCATGGATCCAAGAGTGGTGAGAGTCCAATGCACACAGTTTTGGCAGGAGAGACGGGTTCTGAGGGATTTTCAGGAGGAAATCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

236

Amino Acids

25.58

Weight (kDa)

9.81

Isoelectric Point (pI)

85.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	291, 366
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	3 cut(s)	195, 373, 537
AclWI	GGATC	5 cut(s)	475, 482, 564, 618, 631
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	451, 583
AcuI	CTGAAG	2 cut(s)	204, 336
AcyI	GRCGYC	2 cut(s)	292, 367
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	256, 379
AgsI	TTSAA	5 cut(s)	28, 59, 172, 438, 608
AjnI	CCWGG	2 cut(s)	244, 493
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 343, 375
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	193, 662
AlwI	GGATC	5 cut(s)	475, 482, 564, 618, 631
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	4 cut(s)	19, 31, 247, 577
ApoI	RAATTY	2 cut(s)	451, 583
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	294, 369
AspS9I	GGNCC	3 cut(s)	19, 131, 347
AsuHPI	GGTGA	2 cut(s)	25, 647
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	131, 347
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	291, 366
BccI	CCATC	3 cut(s)	117, 338, 377
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	246, 495
BciVI	GTATCC	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	193, 662
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	2 cut(s)	295, 370
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	246, 495
Bme18I	GGWCC	2 cut(s)	131, 347
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	19, 131, 347
BmiI	GGNNCC	4 cut(s)	293, 368, 526, 625
BmrFI	CCNGG	2 cut(s)	246, 495
BmsI	GCATC	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	472
BsaHI	GRCGYC	2 cut(s)	292, 367
BsaJI	CCNNGG	6 cut(s)	9, 93, 281, 378, 463, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 379
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	246, 495
BseDI	CCNNGG	6 cut(s)	9, 93, 281, 378, 463, 494
BseGI	GGATG	5 cut(s)	103, 128, 165, 191, 388
BseJI	GATNNNNATC	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	256, 379
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	4 cut(s)	21, 33, 249, 579
BshNI	GGYRCC	2 cut(s)	291, 366
BsiHKCI	CYCGRG	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	256, 379
BsmAI	GTCTC	2 cut(s)	193, 662
BsmBI	CGTCTC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	21, 33, 249, 579
BsoBI	CYCGRG	1 cut(s)	405
Bsp143I	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
BspACI	CCGC	3 cut(s)	195, 373, 537
BspANI	GGCC	4 cut(s)	21, 33, 249, 579
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	293, 368, 526, 625
BspPI	GGATC	5 cut(s)	475, 482, 564, 618, 631
BspT107I	GGYRCC	2 cut(s)	291, 366
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	6 cut(s)	9, 93, 281, 378, 463, 494
BssMI	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
BssNI	GRCGYC	2 cut(s)	292, 367
BssT1I	CCWWGG	4 cut(s)	9, 281, 378, 463
Bst2UI	CCWGG	2 cut(s)	246, 495
Bst4CI	ACNGT	1 cut(s)	655
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	292, 367
BstDEI	CTNAG	2 cut(s)	35, 678
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	5 cut(s)	103, 128, 165, 191, 388
BstH2I	RGCGCY	2 cut(s)	295, 370
BstHHI	GCGC	2 cut(s)	294, 369
BstKTI	GATC	6 cut(s)	339, 470, 490, 551, 572, 626
BstMAI	GTCTC	2 cut(s)	193, 662
BstMBI	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 364
BstNI	CCWGG	2 cut(s)	246, 495
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	244, 493
BstSFI	CTRYAG	1 cut(s)	303
BstX2I	RGATCY	5 cut(s)	336, 467, 487, 569, 623
BstYI	RGATCY	5 cut(s)	336, 467, 487, 569, 623
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	21, 33, 249, 579
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	5 cut(s)	103, 128, 165, 191, 388
CfoI	GCGC	2 cut(s)	294, 369
Cfr13I	GGNCC	3 cut(s)	19, 131, 347
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	107, 620
CviJI	RGCY	9 cut(s)	21, 33, 87, 156, 209, 249, 413, 429, 579
CviKI_1	RGCY	9 cut(s)	21, 33, 87, 156, 209, 249, 413, 429, 579
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	35, 678
DinI	GGCGCC	2 cut(s)	293, 368
DpnI	GATC	6 cut(s)	338, 469, 489, 550, 571, 625
DpnII	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	4 cut(s)	9, 281, 378, 463
Eco147I	AGGCCT	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	131, 347
Eco57I	CTGAAG	2 cut(s)	204, 336
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	19, 131
EcoRI	GAATTC	2 cut(s)	451, 583
EcoRII	CCWGG	2 cut(s)	244, 493
EcoT14I	CCWWGG	4 cut(s)	9, 281, 378, 463
EcoT22I	ATGCAT	1 cut(s)	240
EgeI	GGCGCC	2 cut(s)	293, 368
EheI	GGCGCC	2 cut(s)	293, 368
ErhI	CCWWGG	4 cut(s)	9, 281, 378, 463
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	2 cut(s)	110, 623
FaiI	YATR	7 cut(s)	51, 53, 108, 236, 240, 590, 621
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	106, 619
FauI	CCCGC	1 cut(s)	530
FauNDI	CATATG	1 cut(s)	51
FokI	GGATG	5 cut(s)	110, 135, 172, 178, 395
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	2 cut(s)	293, 368
GsaI	CCCAGC	1 cut(s)	201
HaeII	RGCGCY	2 cut(s)	295, 370
HaeIII	GGCC	4 cut(s)	21, 33, 249, 579
HhaI	GCGC	2 cut(s)	294, 369
Hin1I	GRCGYC	2 cut(s)	292, 367
Hin1II	CATG	2 cut(s)	110, 623
Hin6I	GCGC	2 cut(s)	292, 367
HinP1I	GCGC	2 cut(s)	292, 367
HinfI	GANTC	3 cut(s)	395, 473, 640
HphI	GGTGA	2 cut(s)	25, 647
Hpy188I	TCNGA	5 cut(s)	343, 472, 532, 616, 679
Hpy188III	TCNNGA	8 cut(s)	25, 182, 405, 407, 438, 555, 567, 690
HpyAV	CCTTC	8 cut(s)	10, 122, 144, 311, 411, 413, 552, 602
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4V	TGCA	5 cut(s)	113, 140, 238, 265, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 364
HpyF3I	CTNAG	2 cut(s)	35, 678
Hsp92I	GRCGYC	2 cut(s)	292, 367
Hsp92II	CATG	2 cut(s)	110, 623
HspAI	GCGC	2 cut(s)	292, 367
KasI	GGCGCC	2 cut(s)	291, 366
Kzo9I	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
LmnI	GCTCC	1 cut(s)	380
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	6 cut(s)	338, 469, 489, 550, 571, 625
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
MboII	GAAGA	3 cut(s)	71, 168, 346
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	5 cut(s)	336, 467, 487, 569, 623
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	81, 218, 254, 451, 583
MluNI	TGGCCA	1 cut(s)	249
Mly113I	GGCGCC	2 cut(s)	292, 367
MlyI	GAGTC	1 cut(s)	649
Mox20I	TGGCCA	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	213, 702
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	246, 495
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	246, 495
MwoI	GCNNNNNNNGC	2 cut(s)	298, 364
NarI	GGCGCC	2 cut(s)	292, 367
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
NlaIII	CATG	2 cut(s)	110, 623
NlaIV	GGNNCC	4 cut(s)	293, 368, 526, 625
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	395, 473
PflMI	CCANNNNNTGG	1 cut(s)	256
PleI	GAGTC	1 cut(s)	648
PluTI	GGCGCC	2 cut(s)	295, 370
PpsI	GAGTC	1 cut(s)	648
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	244, 493
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	244, 493
PspN4I	GGNNCC	4 cut(s)	293, 368, 526, 625
PspPI	GGNCC	3 cut(s)	19, 131, 347
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	5 cut(s)	336, 467, 487, 569, 623
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	213, 702
Sau3AI	GATC	6 cut(s)	336, 467, 487, 548, 569, 623
Sau96I	GGNCC	3 cut(s)	19, 131, 347
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	2 cut(s)	246, 495
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	303
SfoI	GGCGCC	2 cut(s)	293, 368
Sfr274I	CTCGAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	131, 347
SlaI	CTCGAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	81, 218, 254, 451, 583
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	195, 373, 537
SspDI	GGCGCC	2 cut(s)	291, 366
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	244, 493
StyI	CCWWGG	4 cut(s)	9, 281, 378, 463
TaaI	ACNGT	1 cut(s)	655
TaqI	TCGA	3 cut(s)	268, 287, 406
TasI	AATT	5 cut(s)	81, 218, 254, 451, 583
TfiI	GAWTC	2 cut(s)	395, 473
Tru1I	TTAA	2 cut(s)	213, 702
Tru9I	TTAA	2 cut(s)	213, 702
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	87, 176, 324, 591
TspGWI	ACGGA	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	131, 347
XapI	RAATTY	2 cut(s)	451, 583
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.