Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Reverse (-)

14174144 .. 14175965

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGACGACAATGAAGGGTCTTCTTAAGGGCCTTCGTTACATTACTCAGATTTTTGATGAAGAGAAAGAGCAGGAGATGCAGATAGGATTTCCGACCGATGTAAAGCATGTTGCCCACATTGGCTCCGACGGTCCAACCAACACCACACCAAGCTGGATGAATGACTTTAAAACTCAAGAACATGAGAAAGGTCAAGTCGTTTCCAGGGGAAATTCCAACAAATACAACCCGCAAGGGACGAACCAACGTGGAGCCGGGCTAAAAGAGTTACTGCCTTCGAACACAAACGAGAAACCGAAACAGAAAACAAGGCGGAAACCCGGAGGAGCAGCTTCTCCAAATCATAACGGGTCTCCGCCTAGAAAAAGTAGCGGAAATGCTGCATCATCAGATGAACCATCAAAGCATTCAAGACATAACCGAAGCGCACACGGGTCAACAGACTCATCGAATGATCAAGAACCATCAGTTCGCAGAAGGCGTGGTGGTATCCCGGCTCCAGACACAGAAGTTCCTAATCAAATACCTGATGGTTCAGCTCCTCCACGGAAGGCTACATCGCGTCCTAGGAAACTAAAAGGATCATCAGCAGGAGGAGAAGGTTCGATTAAGAAGTCTTCAAAAGGAAAACCCGAGAATTCAGTTGATACAACCTGTAACGATATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

224

Amino Acids

24.14

Weight (kDa)

9.89

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	565
AciI	CCGC	4 cut(s)	233, 316, 359, 375
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	214, 640
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	414, 624
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	156, 335, 542
AluI	AGCT	3 cut(s)	156, 335, 542
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	332, 383
ApoI	RAATTY	2 cut(s)	214, 640
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	31, 134
AsuC2I	CCSGG	3 cut(s)	259, 324, 497
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	134
AvrII	CCTAGG	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	14, 612
BbvI	GCAGC	2 cut(s)	344, 370
BccI	CCATC	3 cut(s)	409, 475, 527
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	3 cut(s)	259, 324, 497
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	363, 570
BfrI	CTTAAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	333, 384
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	2 cut(s)	334, 385
Bme1390I	CCNGG	4 cut(s)	208, 259, 324, 497
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	31, 134
BmiI	GGNNCC	3 cut(s)	127, 256, 501
BmrFI	CCNGG	4 cut(s)	208, 259, 324, 497
BmsI	GCATC	2 cut(s)	69, 395
BpiI	GAAGAC	2 cut(s)	14, 612
BpmI	CTGGAG	1 cut(s)	486
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	3 cut(s)	259, 324, 497
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	207, 548, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	207, 548, 569
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	3 cut(s)	342, 534, 612
BseXI	GCAGC	2 cut(s)	344, 370
Bsh1236I	CGCG	1 cut(s)	565
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	3 cut(s)	258, 324, 497
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	457, 584
BspACI	CCGC	4 cut(s)	233, 316, 359, 375
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	127, 256, 501
BspPI	GGATC	1 cut(s)	592
BspT104I	TTCGAA	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	360
BssECI	CCNNGG	3 cut(s)	207, 548, 569
BssMI	GATC	2 cut(s)	457, 584
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	2 cut(s)	460, 587
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	457, 584
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	4 cut(s)	206, 257, 322, 495
BstUI	CGCG	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	344, 370
BstV2I	GAAGAC	2 cut(s)	14, 612
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	548
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	31, 134
CseI	GACGC	1 cut(s)	554
CviAII	CATG	2 cut(s)	110, 185
CviJI	RGCY	9 cut(s)	33, 126, 156, 257, 262, 335, 500, 542, 557
CviKI_1	RGCY	9 cut(s)	33, 126, 156, 257, 262, 335, 500, 542, 557
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	459, 586
DpnII	GATC	2 cut(s)	457, 584
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	2 cut(s)	331, 348
Eco130I	CCWWGG	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	2 cut(s)	113, 188
FaiI	YATR	4 cut(s)	111, 186, 348, 420
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	109, 184
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	333, 384
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	333, 384
FspBI	CTAG	2 cut(s)	363, 570
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	333, 384
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	3 cut(s)	258, 324, 497
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	113, 188
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	3 cut(s)	258, 324, 497
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	5 cut(s)	51, 96, 130, 394, 674
Hpy188III	TCNNGA	4 cut(s)	179, 414, 461, 503
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	2 cut(s)	10, 134
HpyAV	CCTTC	6 cut(s)	10, 44, 288, 474, 547, 596
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	82, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	113, 188
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	457, 584
LmnI	GCTCC	5 cut(s)	131, 254, 329, 505, 547
Lsp1109I	GCAGC	2 cut(s)	344, 370
LweI	GCATC	2 cut(s)	69, 395
MaeI	CTAG	2 cut(s)	363, 570
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	3 cut(s)	38, 270, 659
MalI	GATC	2 cut(s)	459, 586
MboI	GATC	2 cut(s)	457, 584
MboII	GAAGA	3 cut(s)	14, 74, 612
MluCI	AATT	2 cut(s)	214, 640
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	4 cut(s)	119, 153, 161, 243
MnlI	CCTC	3 cut(s)	320, 555, 590
MseI	TTAA	3 cut(s)	27, 171, 612
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	3 cut(s)	258, 324, 497
MspR9I	CCNGG	4 cut(s)	208, 259, 324, 497
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	3 cut(s)	259, 324, 497
NdeII	GATC	2 cut(s)	457, 584
NlaIII	CATG	2 cut(s)	113, 188
NlaIV	GGNNCC	3 cut(s)	127, 256, 501
NspI	RCATGY	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	334, 385
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	127, 256, 501
PspPI	GGNCC	2 cut(s)	31, 134
SaqAI	TTAA	3 cut(s)	27, 171, 612
SatI	GCNGC	2 cut(s)	333, 384
Sau3AI	GATC	2 cut(s)	457, 584
Sau96I	GGNCC	2 cut(s)	31, 134
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	4 cut(s)	208, 259, 324, 497
SetI	ASST	8 cut(s)	158, 196, 253, 337, 532, 544, 607, 659
SfaNI	GCATC	2 cut(s)	69, 395
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	26, 177
SmoI	CTYRAG	2 cut(s)	26, 177
Sse9I	AATT	2 cut(s)	214, 640
SsiI	CCGC	4 cut(s)	233, 316, 359, 375
SspMI	CTAG	2 cut(s)	363, 570
StyD4I	CCNGG	4 cut(s)	206, 257, 322, 495
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	281, 452, 608
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	214, 640
Tru1I	TTAA	3 cut(s)	27, 171, 612
Tru9I	TTAA	3 cut(s)	27, 171, 612
TseI	GCWGC	2 cut(s)	332, 383
TspDTI	ATGAA	4 cut(s)	29, 75, 176, 411
TspGWI	ACGGA	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	214, 640
XceI	RCATGY	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	569
XspI	CTAG	2 cut(s)	363, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.