Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Forward (+)

1411088 .. 1413627

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGATGTTGGACGATGCTTTCTCTTTCTTCTATTACCAAGTTTCTTCTTCTTGCCTTCACAAACGCAGAGCACCGATTCATTCACATCGGTTCTCGTATCTCAAAACGGACTCGATTTCGTCAAAAATCTTCTAGTTAACAAAGCTATCGCGTCGATTATACCTCTCCAGATTCCCAGAATTGAGAAATCTATGAAAATCCCGTTCCTTGGAGGAATCGATGTTGTTGTCTCGAATCTCACGATATACGAGCTTGACGTTGCGTCATCTTATGTTAAGCTTGGTGAGACAGGTGTTGTCATCGTCGCTTCAGGGACGACTTGTAATTTGAGTATGAATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATATCTGATCAGGGTATTGCATCTGTTCAGGTTCAAGGCATGGAAATCGGGCTCTCTCTAGGCTTGAAAAGTGATGAAGGAGGCTTAAAACTTTCTCTTTCGGAATGTGGATGCCATGTGGAAGACATTACCATTGAGTTGGAAGGAGGAGCATCATGGTTTTATCAGGGGATGGTTAATGCATTTAAAGACCAAATTGGGTCAAGTGTGGAAAGTACCATTGCCAAGAAACTCACGGAAGGAGTATCAGACCTTGATTCATTCCTACAAAGCCTTCCAAAGGAAATCCCAGTGGATGATAATGCTGACCTTAATGTCACTTTCACCAGTGATCCTATATTGAGAAATTCATCTATCACTTTTGAGATTGATGGCTTGTTCACCAAAGGAGAAACAAATCAAGTCTTAAAATCCTTCTTCAAAAAGTCTGTATCTTTAGTTATCTGCCCTGGAAATTCTAAAATGCTCGGAATTTCAGTTGACGAAGCTGTTTTTAACTCTGCTGCAGCTTTGTACTATAATGCAGACTTTGTGCAATGGGTTGTGGATAAAATACCAGAGCAGTCTCTTTTAAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAAGAAATACCCGAACCAGGATATGAATCTGAACATCAGTTTGTCCTCACCTCCGCTTGTAAAGATATCAGAGCAATACGTTGGAGCTAATGTTAATGCAGACCTAGTAATCAATGTTCTAGATGCAAACCAAGTAATACCTGTAGCTTGCATCTCCTTGATGATCCGGGGATCTGGTGCTCTCAGAGTCATGGGCAATAACCTTGGAGGCAGCGTAAGTTTAGAAGATTTCTCCATGTCTTTGAAATGGAGCAACATTGGAAATCTCCATCTGCATCTTCTTCAGCCAATAGTGTGGACTGTTATACAAACAGTGTTTGTGCCATATGCAAATGACCACCTAGAAAAGGGATTCCCGTTGCCCATAATGCACGGATTCACACTTCAGAATGCGGAAATCATCTGCTCAGAATCTGAAATCACAGTTTGCAGCGATGTCGCCTACTTGGATTCGTCCCAACAGCCTCAATGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

488

Amino Acids

53.49

Weight (kDa)

4.65

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	37 - 211	1.4e-31	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	278 - 477	7.4e-29	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	1043, 1382
AclWI	GGATC	3 cut(s)	704, 1147, 1168
AcsI	RAATTY	3 cut(s)	724, 832, 849
AcuI	CTGAAG	3 cut(s)	294, 1256, 1358
AfaI	GTAC	3 cut(s)	358, 595, 893
AfiI	CCNNNNNNNGG	4 cut(s)	209, 658, 1006, 1336
AgsI	TTSAA	5 cut(s)	377, 413, 445, 799, 1234
AhdI	GACNNNNNGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	826, 1005
AluBI	AGCT	7 cut(s)	146, 253, 280, 866, 887, 1076, 1136
AluI	AGCT	7 cut(s)	146, 253, 280, 866, 887, 1076, 1136
Alw21I	GWGCWC	2 cut(s)	74, 1171
Alw26I	GTCTC	3 cut(s)	235, 281, 948
AlwI	GGATC	3 cut(s)	704, 1147, 1168
AlwNI	CAGNNNCTG	1 cut(s)	1403
ApeKI	GCWGC	4 cut(s)	881, 884, 1200, 1419
ApoI	RAATTY	3 cut(s)	724, 832, 849
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AsuC2I	CCSGG	1 cut(s)	1157
AsuHPI	GGTGA	4 cut(s)	296, 694, 751, 1029
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	74, 1171
BbvI	GCAGC	4 cut(s)	868, 896, 1212, 1431
BccI	CCATC	3 cut(s)	544, 743, 1266
BcgI	CGANNNNNNTGC	4 cut(s)	406, 440, 1408, 1442
BciT130I	CCWGG	2 cut(s)	828, 1007
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	1157
BcoDI	GTCTC	3 cut(s)	235, 281, 948
BfaI	CTAG	6 cut(s)	134, 437, 960, 1094, 1109, 1331
BfmI	CTRYAG	2 cut(s)	882, 1131
BglI	GCCNNNNNGGC	1 cut(s)	1459
BisI	GCNGC	4 cut(s)	882, 885, 1201, 1420
BlsI	GCNGC	4 cut(s)	883, 886, 1202, 1421
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	3 cut(s)	828, 1007, 1157
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	828, 1007, 1157
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	7 cut(s)	5, 407, 479, 539, 1102, 1149, 1273
BmuI	ACTGGG	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	1157
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	1014
BsaJI	CCNNGG	4 cut(s)	208, 826, 1156, 1192
BsaXI	ACNNNNNCTCC	4 cut(s)	1065, 1095, 1188, 1218
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 658, 1006, 1336
Bse1I	ACTGG	2 cut(s)	668, 705
Bse3DI	GCAATG	2 cut(s)	597, 920
Bse8I	GATNNNNATC	1 cut(s)	1014
BseBI	CCWGG	2 cut(s)	828, 1007
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	4 cut(s)	208, 826, 1156, 1192
BseGI	GGATG	4 cut(s)	10, 494, 555, 679
BseJI	GATNNNNATC	1 cut(s)	1014
BseLI	CCNNNNNNNGG	4 cut(s)	209, 658, 1006, 1336
BseMI	GCAATG	2 cut(s)	597, 920
BseMII	CTCAG	2 cut(s)	1186, 1410
BseNI	ACTGG	2 cut(s)	668, 705
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	868, 896, 1212, 1431
Bsh1236I	CGCG	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	74, 1171
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	2 cut(s)	328, 1429
BslI	CCNNNNNNNGG	4 cut(s)	209, 658, 1006, 1336
BsmAI	GTCTC	3 cut(s)	235, 281, 948
BsmFI	GGGAC	2 cut(s)	328, 1429
BsmI	GAATGC	1 cut(s)	1384
Bsp1286I	GDGCHC	3 cut(s)	74, 432, 1171
Bsp143I	GATC	4 cut(s)	385, 709, 1152, 1160
BspACI	CCGC	2 cut(s)	1043, 1382
BspCNI	CTCAG	2 cut(s)	1185, 1409
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	152
BspMAI	CTGCAG	1 cut(s)	886
BspPI	GGATC	3 cut(s)	704, 1147, 1168
BsrDI	GCAATG	2 cut(s)	597, 920
BsrI	ACTGG	2 cut(s)	668, 705
BssECI	CCNNGG	4 cut(s)	208, 826, 1156, 1192
BssMI	GATC	4 cut(s)	385, 709, 1152, 1160
BssT1I	CCWWGG	2 cut(s)	208, 1192
Bst2UI	CCWGG	2 cut(s)	828, 1007
Bst4CI	ACNGT	4 cut(s)	356, 1291, 1303, 1414
BstC8I	GCNNGC	1 cut(s)	1138
BstDEI	CTNAG	2 cut(s)	1172, 1396
BstENI	CCTNNNNNAGG	2 cut(s)	656, 1334
BstF5I	GGATG	4 cut(s)	10, 494, 555, 679
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	4 cut(s)	388, 712, 1155, 1163
BstMAI	GTCTC	3 cut(s)	235, 281, 948
BstMBI	GATC	4 cut(s)	385, 709, 1152, 1160
BstMWI	GCNNNNNNNGC	2 cut(s)	1357, 1459
BstNI	CCWGG	2 cut(s)	828, 1007
BstSCI	CCNGG	3 cut(s)	826, 1005, 1155
BstSFI	CTRYAG	2 cut(s)	882, 1131
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	868, 896, 1212, 1431
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	1160
BstXI	CCANNNNNNTGG	2 cut(s)	517, 1284
BstYI	RGATCY	1 cut(s)	1160
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	1437
BtsCI	GGATG	4 cut(s)	10, 494, 555, 679
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	4 cut(s)	675, 712, 954, 1308
Cac8I	GCNNGC	1 cut(s)	1138
CaiI	CAGNNNCTG	1 cut(s)	1403
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	2 cut(s)	141, 252
Csp6I	GTAC	3 cut(s)	357, 594, 892
CviAII	CATG	5 cut(s)	418, 494, 534, 1180, 1225
CviQI	GTAC	3 cut(s)	357, 594, 892
DdeI	CTNAG	2 cut(s)	1172, 1396
DpnI	GATC	4 cut(s)	387, 711, 1154, 1162
DpnII	GATC	4 cut(s)	385, 709, 1152, 1160
DraI	TTTAAA	2 cut(s)	565, 951
DrdI	GACNNNNNNGTC	1 cut(s)	692
DriI	GACNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	692
Eam1105I	GACNNNNNGTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	208, 1192
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	1056
Eco57I	CTGAAG	3 cut(s)	294, 1256, 1358
EcoNI	CCTNNNNNAGG	2 cut(s)	656, 1334
EcoRII	CCWGG	2 cut(s)	826, 1005
EcoRV	GATATC	1 cut(s)	1056
EcoT14I	CCWWGG	2 cut(s)	208, 1192
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	208, 1192
FaeI	CATG	5 cut(s)	421, 497, 537, 1183, 1228
FaqI	GGGAC	2 cut(s)	328, 1429
FatI	CATG	5 cut(s)	417, 493, 533, 1179, 1224
FauNDI	CATATG	1 cut(s)	1315
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	882, 885, 1201, 1420
FokI	GGATG	4 cut(s)	17, 501, 562, 686
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	882, 885, 1201, 1420
FspBI	CTAG	6 cut(s)	134, 437, 960, 1094, 1109, 1331
GluI	GCNGC	4 cut(s)	882, 885, 1201, 1420
GsuI	CTGGAG	1 cut(s)	152
HapII	CCGG	1 cut(s)	1156
HgaI	GACGC	2 cut(s)	141, 252
Hin1II	CATG	5 cut(s)	421, 497, 537, 1183, 1228
HincII	GTYRAC	2 cut(s)	139, 859
HindII	GTYRAC	2 cut(s)	139, 859
HindIII	AAGCTT	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	4 cut(s)	296, 694, 751, 1029
Hpy166II	GTNNAC	4 cut(s)	139, 759, 859, 1287
Hpy188III	TCNNGA	4 cut(s)	169, 232, 241, 1109
Hpy8I	GTNNAC	4 cut(s)	139, 759, 859, 1287
Hpy99I	CGWCG	2 cut(s)	157, 308
HpyAV	CCTTC	6 cut(s)	66, 449, 515, 611, 662, 802
HpyCH4III	ACNGT	4 cut(s)	356, 1291, 1303, 1414
HpyCH4IV	ACGT	2 cut(s)	258, 1068
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1357, 1459
HpyF3I	CTNAG	2 cut(s)	1172, 1396
HpySE526I	ACGT	2 cut(s)	258, 1068
Hsp92II	CATG	5 cut(s)	421, 497, 537, 1183, 1228
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	385, 709, 1152, 1160
LmnI	GCTCC	3 cut(s)	527, 1073, 1239
Lsp1109I	GCAGC	4 cut(s)	868, 896, 1212, 1431
LweI	GCATC	7 cut(s)	5, 407, 479, 539, 1102, 1149, 1273
MaeI	CTAG	6 cut(s)	134, 437, 960, 1094, 1109, 1331
MaeII	ACGT	2 cut(s)	258, 1068
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	4 cut(s)	387, 711, 1154, 1162
MboI	GATC	4 cut(s)	385, 709, 1152, 1160
MboII	GAAGA	9 cut(s)	20, 37, 40, 122, 512, 787, 1226, 1259, 1262
MflI	RGATCY	1 cut(s)	1160
MhlI	GDGCHC	3 cut(s)	74, 432, 1171
MluCI	AATT	7 cut(s)	180, 325, 337, 573, 724, 832, 849
MlyI	GAGTC	2 cut(s)	105, 1185
MmeI	TCCRAC	2 cut(s)	498, 1051
Mph1103I	ATGCAT	1 cut(s)	562
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	3 cut(s)	828, 1007, 1157
Mva1269I	GAATGC	1 cut(s)	1384
MvaI	CCWGG	2 cut(s)	828, 1007
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	1357, 1459
NciI	CCSGG	1 cut(s)	1157
NdeI	CATATG	1 cut(s)	1315
NdeII	GATC	4 cut(s)	385, 709, 1152, 1160
NlaIII	CATG	5 cut(s)	421, 497, 537, 1183, 1228
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	2 cut(s)	239, 255
PctI	GAATGC	1 cut(s)	1384
PkrI	GCNGC	4 cut(s)	883, 886, 1202, 1421
PleI	GAGTC	2 cut(s)	105, 1184
PpsI	GAGTC	2 cut(s)	105, 1184
Psp6I	CCWGG	2 cut(s)	826, 1005
PspGI	CCWGG	2 cut(s)	826, 1005
PsrI	GAACNNNNNNTAC	2 cut(s)	1089, 1121
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	1403
PsuI	RGATCY	1 cut(s)	1160
RsaI	GTAC	3 cut(s)	358, 595, 893
RsaNI	GTAC	3 cut(s)	357, 594, 892
SatI	GCNGC	4 cut(s)	882, 885, 1201, 1420
Sau3AI	GATC	4 cut(s)	385, 709, 1152, 1160
ScaI	AGTACT	1 cut(s)	358
SchI	GAGTC	2 cut(s)	105, 1185
ScrFI	CCNGG	3 cut(s)	828, 1007, 1157
SduI	GDGCHC	3 cut(s)	74, 432, 1171
SfaNI	GCATC	7 cut(s)	5, 407, 479, 539, 1102, 1149, 1273
SfcI	CTRYAG	2 cut(s)	882, 1131
Sse9I	AATT	7 cut(s)	180, 325, 337, 573, 724, 832, 849
SsiI	CCGC	2 cut(s)	1043, 1382
SspMI	CTAG	6 cut(s)	134, 437, 960, 1094, 1109, 1331
StyD4I	CCNGG	3 cut(s)	826, 1005, 1155
StyI	CCWWGG	2 cut(s)	208, 1192
TaaI	ACNGT	4 cut(s)	356, 1291, 1303, 1414
TaiI	ACGT	2 cut(s)	261, 1071
TaqI	TCGA	4 cut(s)	114, 155, 219, 233
TasI	AATT	7 cut(s)	180, 325, 337, 573, 724, 832, 849
TatI	WGTACW	2 cut(s)	356, 891
TscAI	CASTG	4 cut(s)	675, 712, 961, 1308
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	4 cut(s)	881, 884, 1200, 1419
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	8 cut(s)	69, 209, 350, 468, 627, 717, 961, 1028
TspGWI	ACGGA	3 cut(s)	123, 629, 1377
TspRI	CASTG	4 cut(s)	675, 712, 961, 1308
XagI	CCTNNNNNAGG	2 cut(s)	656, 1334
XapI	RAATTY	3 cut(s)	724, 832, 849
XbaI	TCTAGA	1 cut(s)	1108
XspI	CTAG	6 cut(s)	134, 437, 960, 1094, 1109, 1331
ZrmI	AGTACT	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.