Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Reverse (-)

13663218 .. 13666424

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGCACCGCCAATAATGTTGTTGCTTCTCCTAGCTTCGTTCTTGATTCCAACACAGACCCAATTCCAAGTGGAAGCCAAAGACCAGGCCTTTACCTCCATAGTCATATCCCAAAAGGGTCTTGATTTTCTGAAGGAATTGCTGGTGACCGAAGCTGTTTCTTCCATAATTCCACTCCAAATTCCCCAAATTAAGAAATCGATGAGGGTCCCGTTTCTGGGGAGTGTTTATATGGTGGTTTCCAATATCACAATCTATGGAATCGATGTGGGTTCGTCCTATATTAAGCTGGGTGATGATGGGATTGCTATTATTGCTTCAGAGACGACTTGTAATTTGAGCATGAATTGGTATTATTCGTATAGTACTTGGGTTGCGCCGGTTGAGGTTTCCGATGAAGGCAGTGCCTCTGTAAAGGTTGAAGGCGTGGAAGTTGGGCTTACATTAGGCTTGGGGATCCAAGAAGGAACTCTGAAGCTTTCCCTAAAGGACTGTGGTTGTCATGTTGAGGAGATTTCCATAAAATTGGATGGAGGAGCCTCTTGGTTTTATCAGGGGATGATTAATGCATTTGAAGAACAAATAGGATCTGCAGTGGAAAATTCTATCACCAAGAAACTTAAAGATGGGATTGTAAAGCTCGATACACTTCTGCAAGCTCTTCCAAAGGAAATCCCATTAGATGATGATACTTATTTGAATGCAACTTTTGTAAATGACCCAGTTTTGAGTAATTCTTCCATAGGATTTGAGATTAATGGTTTATTTACTGCACGAAGAAAGCCTTCAGTCTTTGAGTACCATAACAAGGATTCAAAAGCATTAGTTGCATGCTCGGATCCATCCAAAATGCTTGGAATAGCATTGGATGAGGCTGTGTTTAACTCTGTAGCAGCCACATACTTTGACGCAGAATTTATGCAATGGATTGTGGACAAGATACCAGATCAGTCTTTTTTGAACACTGCTGGATGGAGATTCATTATTCCCCAACTATACAAGAAATACCCAAACCATGATATGAACTTGAATATTTCTTTATCTTCTCCACCAGTCATAAAGATCTCAGAGCATAATATTGGTGCTATCATCTATGCTGACCTGATCATTGATGTATTGGACGAAAACAGTGTAATACCAGTTGCATGCATCTCATTGGTCATTCGTGGGTCAAGTTCAATTAAACTCTCGGGCAATAACCTTGCTGGCAGCATGAAAGTTGATGACTTTTCTATGTCATTGAAGTGGAGCAATATTGGCAATCTTCGCATGTATCTCATTCAGCCGGTGGTTTGGACGGTCATTCAGACTGTTTTTGTGCCATATGTGAACTCACACCTCGGAAAGGGAATCCCACTACCAATCGTTCACGGATTCACCATTCAGAATGGCGAACTACTCTGCTCGGGTTCAAGAATTATGGTTTGCAGCGATGTGACATATGAACCATCGGATTCACACAATCTTAATGGGTTCCTGCAAAGTTTGTCTAAATACACTCATGCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

503

Amino Acids

55.14

Weight (kDa)

4.95

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	40 - 211	2.2e-23	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	279 - 480	3.9e-27	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	5 cut(s)	451, 464, 595, 833, 846
AcsI	RAATTY	3 cut(s)	180, 601, 914
AcuI	CTGAAG	4 cut(s)	152, 303, 494, 771
AfaI	GTAC	2 cut(s)	367, 800
AfiI	CCNNNNNNNGG	4 cut(s)	217, 218, 808, 1345
AgsI	TTSAA	9 cut(s)	422, 575, 700, 816, 961, 1030, 1179, 1243, 1413
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	35, 155, 289, 478, 640, 659
AluI	AGCT	6 cut(s)	35, 155, 289, 478, 640, 659
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	5 cut(s)	451, 464, 595, 833, 846
Ama87I	CYCGRG	2 cut(s)	1189, 1405
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	893, 1209, 1428
ApoI	RAATTY	3 cut(s)	180, 601, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	2 cut(s)	564, 756
Asp700I	GAANNNNTTC	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	4 cut(s)	157, 305, 601, 1369
AvaI	CYCGRG	2 cut(s)	1189, 1405
AvaII	GGWCC	1 cut(s)	208
BamHI	GGATCC	2 cut(s)	456, 838
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	905, 1221, 1440
BccI	CCATC	6 cut(s)	293, 524, 620, 850, 966, 1456
BciT130I	CCWGG	1 cut(s)	86
BclI	TGATCA	1 cut(s)	1104
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	591, 888
BglII	AGATCT	1 cut(s)	1062
BisI	GCNGC	3 cut(s)	894, 1210, 1429
BlsI	GCNGC	3 cut(s)	895, 1211, 1430
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	1189, 1405
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	7 cut(s)	6, 209, 210, 458, 538, 840, 1475
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	1 cut(s)	1158
BmuI	ACTGGG	1 cut(s)	716
Bsa29I	ATCGAT	2 cut(s)	200, 264
BsaJI	CCNNGG	1 cut(s)	1339
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 218, 808, 1345
Bse118I	RCCGGY	2 cut(s)	379, 1285
Bse1I	ACTGG	3 cut(s)	722, 1052, 1139
Bse3DI	GCAATG	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	2 cut(s)	200, 264
BseDI	CCNNGG	1 cut(s)	1339
BseGI	GGATG	5 cut(s)	535, 564, 842, 874, 977
BseLI	CCNNNNNNNGG	4 cut(s)	217, 218, 808, 1345
BseMI	GCAATG	1 cut(s)	929
BseMII	CTCAG	1 cut(s)	1080
BseNI	ACTGG	3 cut(s)	722, 1052, 1139
BseRI	GAGGAG	2 cut(s)	524, 549
BseXI	GCAGC	3 cut(s)	905, 1221, 1440
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	200, 264
BsiHKCI	CYCGRG	2 cut(s)	1189, 1405
BsiSI	CCGG	2 cut(s)	380, 1286
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	4 cut(s)	217, 218, 808, 1345
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	2 cut(s)	1189, 1405
Bsp143I	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	1079
BspDI	ATCGAT	2 cut(s)	200, 264
BspLI	GGNNCC	7 cut(s)	6, 209, 210, 458, 538, 840, 1475
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	5 cut(s)	451, 464, 595, 833, 846
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	929
BsrFI	RCCGGY	2 cut(s)	379, 1285
BsrI	ACTGG	3 cut(s)	722, 1052, 1139
BssAI	RCCGGY	2 cut(s)	379, 1285
BssECI	CCNNGG	1 cut(s)	1339
BssMI	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	4 cut(s)	494, 1130, 1300, 1312
Bst6I	CTCTTC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstC8I	GCNNGC	4 cut(s)	657, 832, 1147, 1207
BstDEI	CTNAG	1 cut(s)	1066
BstEII	GGTNACC	1 cut(s)	145
BstENI	CCTNNNNNAGG	1 cut(s)	1343
BstF5I	GGATG	5 cut(s)	535, 564, 842, 874, 977
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	6 cut(s)	459, 590, 841, 949, 1065, 1107
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 827, 1257, 1266
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	3 cut(s)	834, 1149, 1273
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	2 cut(s)	591, 888
BstV1I	GCAGC	3 cut(s)	905, 1221, 1440
BstX2I	RGATCY	4 cut(s)	456, 587, 838, 1062
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	4 cut(s)	456, 587, 838, 1062
Bsu15I	ATCGAT	2 cut(s)	200, 264
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	2 cut(s)	200, 264
BtgZI	GCGATG	1 cut(s)	1446
BtsCI	GGATG	5 cut(s)	535, 564, 842, 874, 977
BtsI	GCAGTG	3 cut(s)	409, 600, 963
BtsIMutI	CAGTG	4 cut(s)	409, 600, 963, 1135
Cac8I	GCNNGC	4 cut(s)	657, 832, 1147, 1207
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	379, 1285
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	2 cut(s)	200, 264
CseI	GACGC	1 cut(s)	917
Csp6I	GTAC	2 cut(s)	366, 799
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	8 cut(s)	343, 503, 831, 1016, 1146, 1213, 1270, 1502
CviQI	GTAC	2 cut(s)	366, 799
DdeI	CTNAG	1 cut(s)	1066
DpnI	GATC	6 cut(s)	458, 589, 840, 948, 1064, 1106
DpnII	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	4 cut(s)	152, 303, 494, 771
Eco88I	CYCGRG	2 cut(s)	1189, 1405
Eco91I	GGTNACC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	1343
EcoO109I	RGGNCCY	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	2 cut(s)	571, 1151
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	8 cut(s)	346, 506, 834, 1019, 1149, 1216, 1273, 1505
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 769, 801
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	8 cut(s)	342, 502, 830, 1015, 1145, 1212, 1269, 1501
FauNDI	CATATG	2 cut(s)	1324, 1441
FbaI	TGATCA	1 cut(s)	1104
Fnu4HI	GCNGC	3 cut(s)	894, 1210, 1429
FokI	GGATG	5 cut(s)	542, 571, 829, 881, 984
Fsp4HI	GCNGC	3 cut(s)	894, 1210, 1429
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	894, 1210, 1429
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	380, 1286
HgaI	GACGC	1 cut(s)	917
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	8 cut(s)	346, 506, 834, 1019, 1149, 1216, 1273, 1505
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	7 cut(s)	46, 261, 812, 978, 1350, 1374, 1454
HpaII	CCGG	2 cut(s)	380, 1286
HphI	GGTGA	4 cut(s)	157, 305, 601, 1369
Hpy166II	GTNNAC	3 cut(s)	934, 1330, 1369
Hpy188III	TCNNGA	3 cut(s)	43, 122, 1413
Hpy8I	GTNNAC	3 cut(s)	934, 1330, 1369
HpyAV	CCTTC	5 cut(s)	127, 392, 416, 458, 795
HpyCH4III	ACNGT	4 cut(s)	494, 1130, 1300, 1312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 827, 1257, 1266
HpyF3I	CTNAG	1 cut(s)	1066
Hsp92II	CATG	8 cut(s)	346, 506, 834, 1019, 1149, 1216, 1273, 1505
HspAI	GCGC	1 cut(s)	377
KflI	GGGWCCC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	1104
Kzo9I	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	536, 1248
Lsp1109I	GCAGC	3 cut(s)	905, 1221, 1440
LweI	GCATC	1 cut(s)	1158
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	145, 1435
MalI	GATC	6 cut(s)	458, 589, 840, 948, 1064, 1106
MboI	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
MboII	GAAGA	7 cut(s)	153, 587, 653, 729, 789, 1035, 1256
MflI	RGATCY	4 cut(s)	456, 587, 838, 1062
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	9 cut(s)	106, 198, 379, 418, 502, 527, 550, 865, 1349
Mph1103I	ATGCAT	2 cut(s)	571, 1151
MroXI	GAANNNNTTC	1 cut(s)	784
MseI	TTAA	8 cut(s)	192, 285, 564, 621, 756, 882, 1182, 1467
MslI	CAYNNNNRTG	1 cut(s)	1243
MspI	CCGG	2 cut(s)	380, 1286
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	314, 827, 1257, 1266
NdeI	CATATG	2 cut(s)	1324, 1441
NdeII	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
NlaIII	CATG	8 cut(s)	346, 506, 834, 1019, 1149, 1216, 1273, 1505
NlaIV	GGNNCC	7 cut(s)	6, 209, 210, 458, 538, 840, 1475
NmuCI	GTSAC	2 cut(s)	145, 1435
NsiI	ATGCAT	2 cut(s)	571, 1151
NspI	RCATGY	3 cut(s)	834, 1149, 1273
PaeI	GCATGC	2 cut(s)	834, 1149
PceI	AGGCCT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	784
PfeI	GAWTC	7 cut(s)	46, 261, 812, 978, 1350, 1374, 1454
PkrI	GCNGC	3 cut(s)	895, 1211, 1430
PpuMI	RGGWCCY	1 cut(s)	208
PshBI	ATTAAT	2 cut(s)	564, 756
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	7 cut(s)	6, 209, 210, 458, 538, 840, 1475
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	4 cut(s)	456, 587, 838, 1062
RsaI	GTAC	2 cut(s)	367, 800
RsaNI	GTAC	2 cut(s)	366, 799
RseI	CAYNNNNRTG	1 cut(s)	1243
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	8 cut(s)	192, 285, 564, 621, 756, 882, 1182, 1467
SatI	GCNGC	3 cut(s)	894, 1210, 1429
Sau3AI	GATC	6 cut(s)	456, 587, 838, 946, 1062, 1104
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	1158
SfcI	CTRYAG	2 cut(s)	591, 888
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	1243
SphI	GCATGC	2 cut(s)	834, 1149
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	3 cut(s)	1033, 1078, 1255
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	494, 1130, 1300, 1312
TaqI	TCGA	3 cut(s)	200, 264, 642
TaqII	GACCGA	1 cut(s)	164
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	7 cut(s)	46, 261, 812, 978, 1350, 1374, 1454
Tru1I	TTAA	8 cut(s)	192, 285, 564, 621, 756, 882, 1182, 1467
Tru9I	TTAA	8 cut(s)	192, 285, 564, 621, 756, 882, 1182, 1467
TscAI	CASTG	4 cut(s)	409, 600, 970, 1135
TseFI	GTSAC	2 cut(s)	145, 1435
TseI	GCWGC	3 cut(s)	893, 1209, 1428
Tsp45I	GTSAC	2 cut(s)	145, 1435
TspDTI	ATGAA	6 cut(s)	359, 411, 970, 1037, 1229, 1458
TspGWI	ACGGA	1 cut(s)	1386
TspRI	CASTG	4 cut(s)	409, 600, 970, 1135
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	2 cut(s)	564, 756
XagI	CCTNNNNNAGG	1 cut(s)	1343
XapI	RAATTY	3 cut(s)	180, 601, 914
XceI	RCATGY	3 cut(s)	834, 1149, 1273
XmnI	GAANNNNTTC	1 cut(s)	784
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	2 cut(s)	571, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.