Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Forward (+)

32742192 .. 32745545

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41770.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGCACCGCCAATAATGCTCTTGCTTCTTCTTGCTTCGTTCTTGATTCCAACGCAGACCCAATTCCAAGTAGAAGCCAAAGATGAAGCCTTTACCTCCATAGTCATATCCCAAAAGGGTCTTGACTTTCTGAAGGAATTGCTTGTAACCGAAGCTGTTTCTTCAATAATTCCACTCCAGATTCCCAGAATTGAGAAATCAGTGAGGTTTCCGTTTCTGGGTAGTGTTGAAATGGTGGTTTCGAATATCACAATCTATGGAATCGATGTGGGTTCGTCTTATGTTAAGCTCGGTGATGATGGGATTGCTATTATTGCTTCCAAGACGACTTGTAATTTGAGCATGAATTGGTATTATTCGTATACTACTTGGGTTGCGCCAATTGAGGTGGAGGATGAAGGCAGTGCGTCTGTTCAGGTTGAGGGCGTGGAAGTTGGACTTACATTAGGCTTGGGGATCCAAGAAGGAACTCTGAAGCTTTCCCTAAAGGATTGTGGCTGTTATGTTAAGGAGATCTCCATAAAATTGGATGGAGGAGCCTCTTGGTTTTATCAAGGGATGATCAATGCATTTGAAGAACAAATTGGATCTGCAGTGGAAAATGCTATCACGAAAAAACTTAAAGATGGGATTGTAAAGCTGGATACACTTCTCCAAGCTCTTCCAAAGGAAATCCCATTGGATGATGATACTTATTTGAATGCAACTTTCGTAAATGACCCAGTTTTGAGTAATTCTTCCATAGGATTTGAGATTAATGGTTTATTTACTGCACGAAGAAAGCCTTCAGTGTCTGAGTACCTTAACAAGGATACAAAAGCATTAGTTGCATGCTCGGATCCATCTAAAATGCTTGGAATAGCATTGGATGAGGCTGTGTTTAACTCTGTAGCAGCCACATACTTTGATGCAGAATTTATGCAATGGATTGTGGACAAGATACCAGATCAGTCTTTTTTGAACACTGCTGGATACAGATTCATTATTCCTCAACTATACAAGAAATACCCAAATCATGATATGAACTTGAATATTTCTTTATCTTCTCCACCGATCATAGAGATCTCAGAGCATGATATTGGTGCTATCATCTATGCTGACTTGATCATTGATGTATTGGATGAAGACGGTGTAATACCAGTTGCATGCATCTCATTGGTCATTCGTGGATCAAGTTCAGTTAAAATCTCAGGCAATAACCTTGCCGGTAATATGAAAGTAGACGACTTTTCTATGTCATTGAAGTGGAGTAATATTGGCAATCTTCGCATGTATCTAATTCAGCCGGTGGTGTGGACAGGCATTCAGACCGTTTTTGTGCCATATGTGAACAAACACCTTGGTAAGGGAATTCCTCTACCAATCGTTCACGGCTTCACCATTCAAAACGGCGAACTCCTCTGCTCAGATTCAAGAATTATGGTTTGCAGTGACGTGACTTACGAACCATCAGATTCACACAATCTCAATTGGCTCCTACCAAGTTTGTCCAAATACACGCATGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

504

Amino Acids

55.24

Weight (kDa)

4.69

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	40 - 211	4e-23	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	279 - 367	1.6e-10	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	362, 1221
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	6 cut(s)	451, 464, 595, 833, 846, 1177
AcsI	RAATTY	2 cut(s)	914, 1350
AcuI	CTGAAG	3 cut(s)	152, 494, 771
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	3 cut(s)	218, 808, 1345
AgsI	TTSAA	9 cut(s)	165, 230, 575, 700, 961, 1030, 1243, 1385, 1413
AjiI	CACGTC	1 cut(s)	1435
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	5 cut(s)	155, 289, 478, 640, 659
AluI	AGCT	5 cut(s)	155, 289, 478, 640, 659
AlwI	GGATC	6 cut(s)	451, 464, 595, 833, 846, 1177
AlwNI	CAGNNNCTG	1 cut(s)	794
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	2 cut(s)	914, 1350
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	305, 1369
AsuII	TTCGAA	1 cut(s)	242
BamHI	GGATCC	2 cut(s)	456, 838
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	1131
BbvI	GCAGC	1 cut(s)	905
BccI	CCATC	5 cut(s)	293, 524, 620, 850, 1456
BceAI	ACGGC	2 cut(s)	1387, 1405
BciVI	GTATCC	3 cut(s)	637, 805, 965
BclI	TGATCA	2 cut(s)	561, 1104
BfmI	CTRYAG	2 cut(s)	591, 888
BfuI	GTATCC	3 cut(s)	637, 805, 965
BglII	AGATCT	2 cut(s)	513, 1062
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
BmgBI	CACGTC	1 cut(s)	1435
BmiI	GGNNCC	5 cut(s)	6, 458, 538, 840, 1475
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	898, 1158
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	1131
BpmI	CTGGAG	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	1339
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 808, 1345
Bse118I	RCCGGY	2 cut(s)	1205, 1285
Bse1I	ACTGG	2 cut(s)	722, 1139
Bse3DI	GCAATG	1 cut(s)	929
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	1339
BseGI	GGATG	6 cut(s)	400, 535, 564, 688, 874, 1126
BseLI	CCNNNNNNNGG	3 cut(s)	218, 808, 1345
BseMI	GCAATG	1 cut(s)	929
BseMII	CTCAG	4 cut(s)	786, 1080, 1203, 1419
BseNI	ACTGG	2 cut(s)	722, 1139
BseRI	GAGGAG	2 cut(s)	549, 1388
BseXI	GCAGC	1 cut(s)	905
BsgI	GTGCAG	1 cut(s)	756
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	1206, 1286
BslI	CCNNNNNNNGG	3 cut(s)	218, 808, 1345
BsmI	GAATGC	2 cut(s)	706, 1302
Bsp119I	TTCGAA	1 cut(s)	242
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	4 cut(s)	787, 1079, 1202, 1418
BspDI	ATCGAT	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	5 cut(s)	6, 458, 538, 840, 1475
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	6 cut(s)	451, 464, 595, 833, 846, 1177
BspQI	GCTCTTC	1 cut(s)	666
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	929
BsrFI	RCCGGY	2 cut(s)	1205, 1285
BsrI	ACTGG	2 cut(s)	722, 1139
BssAI	RCCGGY	2 cut(s)	1205, 1285
BssECI	CCNNGG	1 cut(s)	1339
BssNAI	GTATAC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	1339
Bst1107I	GTATAC	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	1130, 1312
Bst6I	CTCTTC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	832, 1147, 1503
BstDEI	CTNAG	4 cut(s)	795, 1066, 1189, 1405
BstENI	CCTNNNNNAGG	2 cut(s)	806, 1343
BstF5I	GGATG	6 cut(s)	400, 535, 564, 688, 874, 1126
BstHHI	GCGC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 314, 827, 1266
BstNSI	RCATGY	4 cut(s)	834, 1149, 1273, 1505
BstSFI	CTRYAG	2 cut(s)	591, 888
BstV1I	GCAGC	1 cut(s)	905
BstV2I	GAAGAC	1 cut(s)	1131
BstX2I	RGATCY	5 cut(s)	456, 513, 587, 838, 1062
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	5 cut(s)	456, 513, 587, 838, 1062
BstZ17I	GTATAC	1 cut(s)	363
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	3 cut(s)	637, 805, 965
BsuTUI	ATCGAT	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	1435
BtsCI	GGATG	6 cut(s)	400, 535, 564, 688, 874, 1126
BtsI	GCAGTG	4 cut(s)	409, 600, 963, 1435
BtsIMutI	CAGTG	6 cut(s)	207, 409, 600, 795, 963, 1435
Cac8I	GCNNGC	3 cut(s)	832, 1147, 1503
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	1205, 1285
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	799
CspCI	CAANNNNNGTGG	4 cut(s)	369, 404, 886, 921
CviAII	CATG	7 cut(s)	343, 831, 1016, 1073, 1146, 1270, 1502
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	4 cut(s)	795, 1066, 1189, 1405
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
Eco130I	CCWWGG	1 cut(s)	1339
Eco57I	CTGAAG	3 cut(s)	152, 494, 771
EcoNI	CCTNNNNNAGG	2 cut(s)	806, 1343
EcoRI	GAATTC	1 cut(s)	1350
EcoT14I	CCWWGG	1 cut(s)	1339
EcoT22I	ATGCAT	2 cut(s)	571, 1151
ErhI	CCWWGG	1 cut(s)	1339
FaeI	CATG	7 cut(s)	346, 834, 1019, 1076, 1149, 1273, 1505
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 769, 801
FatI	CATG	7 cut(s)	342, 830, 1015, 1072, 1145, 1269, 1501
FauNDI	CATATG	1 cut(s)	1324
FbaI	TGATCA	2 cut(s)	561, 1104
FblI	GTMKAC	2 cut(s)	362, 1221
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	6 cut(s)	407, 542, 571, 695, 881, 1133
Fsp4HI	GCNGC	1 cut(s)	894
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	161
HapII	CCGG	2 cut(s)	1206, 1286
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	7 cut(s)	346, 834, 1019, 1076, 1149, 1273, 1505
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	6 cut(s)	46, 181, 261, 978, 1409, 1454
HpaII	CCGG	2 cut(s)	1206, 1286
HphI	GGTGA	2 cut(s)	305, 1369
Hpy166II	GTNNAC	6 cut(s)	363, 934, 1222, 1296, 1330, 1369
Hpy188I	TCNGA	8 cut(s)	132, 474, 796, 838, 1069, 1308, 1408, 1453
Hpy188III	TCNNGA	6 cut(s)	43, 122, 178, 610, 1016, 1413
Hpy8I	GTNNAC	6 cut(s)	363, 934, 1222, 1296, 1330, 1369
HpyAV	CCTTC	4 cut(s)	127, 392, 458, 795
HpyCH4III	ACNGT	2 cut(s)	1130, 1312
HpyCH4IV	ACGT	1 cut(s)	1434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 314, 827, 1266
HpyF3I	CTNAG	4 cut(s)	795, 1066, 1189, 1405
HpySE526I	ACGT	1 cut(s)	1434
Hsp92II	CATG	7 cut(s)	346, 834, 1019, 1076, 1149, 1273, 1505
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	561, 1104
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	536, 1479
Lsp1109I	GCAGC	1 cut(s)	905
LweI	GCATC	2 cut(s)	898, 1158
MaeII	ACGT	1 cut(s)	1434
MaeIII	GTNAC	3 cut(s)	145, 1430, 1435
MboII	GAAGA	9 cut(s)	20, 153, 587, 653, 729, 789, 1035, 1136, 1256
MfeI	CAATTG	2 cut(s)	381, 1468
MflI	RGATCY	5 cut(s)	456, 513, 587, 838, 1062
MmeI	TCCRAC	2 cut(s)	74, 415
Mph1103I	ATGCAT	2 cut(s)	571, 1151
MroXI	GAANNNNTTC	1 cut(s)	784
MseI	TTAA	7 cut(s)	285, 507, 621, 756, 804, 882, 1182
MslI	CAYNNNNRTG	1 cut(s)	1243
MspI	CCGG	2 cut(s)	1206, 1286
MunI	CAATTG	2 cut(s)	381, 1468
Mva1269I	GAATGC	2 cut(s)	706, 1302
MwoI	GCNNNNNNNGC	4 cut(s)	16, 314, 827, 1266
NdeI	CATATG	1 cut(s)	1324
NlaIII	CATG	7 cut(s)	346, 834, 1019, 1076, 1149, 1273, 1505
NlaIV	GGNNCC	5 cut(s)	6, 458, 538, 840, 1475
NmuCI	GTSAC	2 cut(s)	1430, 1435
NsiI	ATGCAT	2 cut(s)	571, 1151
NspI	RCATGY	4 cut(s)	834, 1149, 1273, 1505
NspV	TTCGAA	1 cut(s)	242
PaeI	GCATGC	3 cut(s)	834, 1149, 1505
PagI	TCATGA	1 cut(s)	1015
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	1440
PctI	GAATGC	2 cut(s)	706, 1302
PdmI	GAANNNNTTC	1 cut(s)	784
PfeI	GAWTC	6 cut(s)	46, 181, 261, 978, 1409, 1454
PkrI	GCNGC	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	756
PspN4I	GGNNCC	5 cut(s)	6, 458, 538, 840, 1475
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	5 cut(s)	456, 513, 587, 838, 1062
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	1243
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	7 cut(s)	285, 507, 621, 756, 804, 882, 1182
SatI	GCNGC	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	898, 1158
SfcI	CTRYAG	2 cut(s)	591, 888
SfuI	TTCGAA	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	1243
SphI	GCATGC	3 cut(s)	834, 1149, 1505
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	2 cut(s)	1033, 1255
StyI	CCWWGG	1 cut(s)	1339
TaaI	ACNGT	2 cut(s)	1130, 1312
TaiI	ACGT	1 cut(s)	1437
TaqI	TCGA	2 cut(s)	242, 264
TfiI	GAWTC	6 cut(s)	46, 181, 261, 978, 1409, 1454
Tru1I	TTAA	7 cut(s)	285, 507, 621, 756, 804, 882, 1182
Tru9I	TTAA	7 cut(s)	285, 507, 621, 756, 804, 882, 1182
TscAI	CASTG	6 cut(s)	207, 409, 600, 795, 970, 1435
TseFI	GTSAC	2 cut(s)	1430, 1435
TseI	GCWGC	1 cut(s)	893
Tsp45I	GTSAC	2 cut(s)	1430, 1435
TspDTI	ATGAA	7 cut(s)	99, 359, 411, 970, 1037, 1137, 1229
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	6 cut(s)	207, 409, 600, 795, 970, 1435
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	2 cut(s)	806, 1343
XapI	RAATTY	2 cut(s)	914, 1350
XceI	RCATGY	4 cut(s)	834, 1149, 1273, 1505
XmiI	GTMKAC	2 cut(s)	362, 1221
XmnI	GAANNNNTTC	1 cut(s)	784
Zsp2I	ATGCAT	2 cut(s)	571, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.