Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Reverse (-)

57847465 .. 57848223

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCATCTGCTTCGTTCTTCATTCCAACGTAGACCCAATTCCAAGTTGAAGCCAAAGATCGACCAAGCCTTTACCCCCACGGTCATATCCGATTTTCTGAAGGAATTGCTGGTAATCGAAGCTGTTTCTTCCATAATTCCTCTCCAAGTTCCCCAGATTGAGAAATCAATGAGGATCCTATTTCTGGGTAGTGTTCATATGGTGGTTTCCAATATCACAATCTATGGAATCTATGTGGGTTCCTCATTAAACTGGGTGATGATGGAATTGCTAGCTATAATTGCTTCAAAGACAACTTGTAATTTGAGTATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

9.58

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	169, 182
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	49, 288
AluBI	AGCT	2 cut(s)	122, 275
AluI	AGCT	2 cut(s)	122, 275
AlwI	GGATC	2 cut(s)	169, 182
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	174
BccI	CCATC	1 cut(s)	256
BcgI	CGANNNNNNTGC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	272, 316
BmiI	GGNNCC	2 cut(s)	176, 241
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	57, 174
BspLI	GGNNCC	2 cut(s)	176, 241
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	169, 182
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	57, 174
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	60, 177
BstMBI	GATC	2 cut(s)	57, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	273
CviJI	RGCY	4 cut(s)	52, 68, 122, 275
CviKI_1	RGCY	4 cut(s)	52, 68, 122, 275
DpnI	GATC	2 cut(s)	59, 176
DpnII	GATC	2 cut(s)	57, 174
Eco57I	CTGAAG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	8 cut(s)	86, 134, 198, 200, 225, 234, 278, 311
FauNDI	CATATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	31
FspBI	CTAG	2 cut(s)	272, 316
HinfI	GANTC	1 cut(s)	228
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	91, 99
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	57, 174
LpnPI	CCDG	4 cut(s)	95, 167, 170, 238
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	272, 316
MaeII	ACGT	1 cut(s)	28
MalI	GATC	2 cut(s)	59, 176
MboI	GATC	2 cut(s)	57, 174
MboII	GAAGA	2 cut(s)	9, 120
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	6 cut(s)	37, 104, 135, 266, 279, 301
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	150, 165, 253
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	2 cut(s)	57, 174
NheI	GCTAGC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	176, 241
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	176, 241
PsuI	RGATCY	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	57, 174
SetI	ASST	3 cut(s)	31, 124, 277
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	6 cut(s)	37, 104, 135, 266, 279, 301
SspMI	CTAG	2 cut(s)	272, 316
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	60, 117
TasI	AATT	6 cut(s)	37, 104, 135, 266, 279, 301
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	9, 185
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	2 cut(s)	272, 316
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.