Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Reverse (-)

54292 .. 54756

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggttctttcagaaagttcatggcttttactttcttcacagttctatcactttttctgattcctacaaaagcccaagaagtaggattcatatccgcagttatatcaagtaaaggtcttgactttaccaaggacttgctgatacaagaggcaatttcttctataattccacttcaattgcctcaaattgaaaagtctatgaaaatcccacttatcggtcaagttgatgttgctctgtccaatatcacaatatatagtgttgatattgcttcttcatatgtggagactggggactccggtattgctttggttgcttcaggagccactgcaaatttgagtatgcattggcagtactcttataccacttggttgtttgaagtttcggataatggggccgcctttattcaggtaggaggagacgctcagaaaggctttgtttactttgattttgctttaattgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

4.58

Isoelectric Point (pI)

22.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 396
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	176, 191, 377
Alw26I	GTCTC	2 cut(s)	278, 411
AoxI	GGCC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	278, 411
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	322, 394
BmrI	ACTGGG	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	278, 411
BsmBI	CGTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	96, 396
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	322, 394
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	423
BstMAI	GTCTC	2 cut(s)	278, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 320, 458
BsuRI	GGCC	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	26, 74, 323, 395, 432
CviKI_1	RGCY	5 cut(s)	26, 74, 323, 395, 432
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	1 cut(s)	25
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	3 cut(s)	61, 87, 293
HpaII	CCGG	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	14, 60, 385, 426
Hpy188III	TCNNGA	2 cut(s)	119, 318
Hpy8I	GTNNAC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	329, 343, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 320, 458
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	4 cut(s)	273, 303, 310, 392
MboII	GAAGA	3 cut(s)	28, 150, 264
MfeI	CAATTG	1 cut(s)	176
MluCI	AATT	6 cut(s)	153, 165, 176, 186, 331, 456
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	142, 192, 407
Mph1103I	ATGCAT	1 cut(s)	345
MseI	TTAA	1 cut(s)	455
MspI	CCGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	311, 320, 458
NdeI	CATATG	1 cut(s)	277
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	322, 394
NsiI	ATGCAT	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	61, 87
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	322, 394
PspPI	GGNCC	1 cut(s)	393
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	287
SetI	ASST	2 cut(s)	118, 411
Sse9I	AATT	6 cut(s)	153, 165, 176, 186, 331, 456
SsiI	CCGC	2 cut(s)	96, 396
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	6 cut(s)	153, 165, 176, 186, 331, 456
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	61, 87
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	10, 79, 215, 264
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.