Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387293.1

Orthogroup ID

OG0007712

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 904

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

atgcttggaatagcattggatgaggctgtgtttaactctgtagcagccacatactttgatgcagaatttatgcaatggactgtggacaagataccagatcagtcttttttgaacactgctggatggagattcgttattccccaactatacaagaaatacccaaaccatgatatgaacttgaatatttctttatcttctccaccagtcataaagatctcagagcataatattggagctatcatctatgctgacctgatcattgatgtattggacgaaaacagtgtaataccagttgcatgcatctcattggtcattcgtgcatcaagttcagttaaactctcgggcaataaccttgccggcagcatgaaagtggatgacttttctatgtcattgaagtggagcaatattggcaatcttcgtatgtatctcattcagccggtggtttggacggtcattcagactgtttttgtgccatatgtgaactcacacctcggaaagggaatcccactac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

170

Amino Acids

18.88

Weight (kDa)

5.47

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04970 AT1G04970 AT1G04970
fragaria_vesca	FvH4_6g41770 FvH4_6g41770 FvH4_6g41770
malus_domestica	MD09G1117400.v1.1
prunus_persica	Prupe.3G206400_v2.0.a1
pyrus_communis	pycom09g04250 pycom16g16220
rosa_chinensis	RchiOBHm_Chr2g0157551
rosa_laevigata	RLG00000020997
rosa_multiflora	Rmu_co8387293.1_g000001 Rmu_sc0000195.1_g000041 Rmu_sc0000861.1_g000014
rosa_roxburghii	Rroxscaffold_2G00092130
rosa_rugosa	Rorug02G0462000 Rorug06G0244900
rosa_samantha	Rh2AG526100 Rh2BG540800 Rh2CG510800 Rh2DG549300 Rh6AG379800
rosa_wichuraiana	Rw2G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	112, 181, 394
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	44, 360
ApoI	RAATTY	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	56, 372
BccI	CCATC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	2 cut(s)	45, 361
BlsI	GCNGC	2 cut(s)	46, 362
BmeT110I	CYCGRG	1 cut(s)	340
BmsI	GCATC	3 cut(s)	49, 309, 329
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse118I	RCCGGY	2 cut(s)	356, 436
Bse1I	ACTGG	2 cut(s)	203, 290
Bse3DI	GCAATG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	3 cut(s)	25, 128, 379
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	203, 290
BseXI	GCAGC	2 cut(s)	56, 372
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	357, 437
BslI	CCNNNNNNNGG	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	97, 213, 255
BspCNI	CTCAG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	80
BsrFI	RCCGGY	2 cut(s)	356, 436
BsrI	ACTGG	2 cut(s)	203, 290
BssAI	RCCGGY	2 cut(s)	356, 436
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	3 cut(s)	97, 213, 255
Bst4CI	ACNGT	4 cut(s)	82, 281, 451, 463
BstC8I	GCNNGC	2 cut(s)	298, 358
BstDEI	CTNAG	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	25, 128, 379
BstKTI	GATC	3 cut(s)	100, 216, 258
BstMBI	GATC	3 cut(s)	97, 213, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	56, 372
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	25, 128, 379
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 286
Cac8I	GCNNGC	2 cut(s)	298, 358
Cfr10I	RCCGGY	2 cut(s)	356, 436
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	3 cut(s)	167, 297, 364
CviJI	RGCY	4 cut(s)	26, 47, 236, 436
CviKI_1	RGCY	4 cut(s)	26, 47, 236, 436
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	3 cut(s)	99, 215, 257
DpnII	GATC	3 cut(s)	97, 213, 255
Eco88I	CYCGRG	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoT22I	ATGCAT	1 cut(s)	302
FaeI	CATG	3 cut(s)	170, 300, 367
FatI	CATG	3 cut(s)	166, 296, 363
FauNDI	CATATG	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	45, 361
FokI	GGATG	3 cut(s)	32, 135, 386
Fsp4HI	GCNGC	2 cut(s)	45, 361
GluI	GCNGC	2 cut(s)	45, 361
HapII	CCGG	2 cut(s)	357, 437
Hin1II	CATG	3 cut(s)	170, 300, 367
HinfI	GANTC	2 cut(s)	129, 501
HpaII	CCGG	2 cut(s)	357, 437
Hpy166II	GTNNAC	2 cut(s)	85, 481
Hpy188I	TCNGA	3 cut(s)	220, 459, 494
Hpy8I	GTNNAC	2 cut(s)	85, 481
HpyCH4III	ACNGT	4 cut(s)	82, 281, 451, 463
HpyCH4V	TGCA	5 cut(s)	62, 73, 296, 300, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	170, 300, 367
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	97, 213, 255
LmnI	GCTCC	2 cut(s)	233, 399
LpnPI	CCDG	7 cut(s)	105, 108, 216, 266, 303, 370, 450
Lsp1109I	GCAGC	2 cut(s)	56, 372
LweI	GCATC	3 cut(s)	49, 309, 329
MalI	GATC	3 cut(s)	99, 215, 257
MboI	GATC	3 cut(s)	97, 213, 255
MboII	GAAGA	2 cut(s)	186, 407
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	2 cut(s)	16, 500
Mph1103I	ATGCAT	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	2 cut(s)	33, 333
MslI	CAYNNNNRTG	2 cut(s)	368, 394
MspI	CCGG	2 cut(s)	357, 437
MwoI	GCNNNNNNNGC	1 cut(s)	408
NaeI	GCCGGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	3 cut(s)	97, 213, 255
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	3 cut(s)	170, 300, 367
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	129, 501
PkrI	GCNGC	2 cut(s)	46, 362
PsuI	RGATCY	1 cut(s)	213
RseI	CAYNNNNRTG	2 cut(s)	368, 394
SaqAI	TTAA	2 cut(s)	33, 333
SatI	GCNGC	2 cut(s)	45, 361
Sau3AI	GATC	3 cut(s)	97, 213, 255
SetI	ASST	4 cut(s)	238, 255, 354, 492
SfaNI	GCATC	3 cut(s)	49, 309, 329
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	368, 394
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	1 cut(s)	65
SspI	AATATT	3 cut(s)	184, 229, 406
TaaI	ACNGT	4 cut(s)	82, 281, 451, 463
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	129, 501
Tru1I	TTAA	2 cut(s)	33, 333
Tru9I	TTAA	2 cut(s)	33, 333
TscAI	CASTG	2 cut(s)	121, 286
TseI	GCWGC	2 cut(s)	44, 360
TspDTI	ATGAA	2 cut(s)	188, 380
TspRI	CASTG	2 cut(s)	121, 286
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.