Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014581

Physical Location & Seq

Genomic Coordinates Reverse (-)

1413644 .. 1416218

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAAAGAAAAATGTACAAATCAACGGTGTTCCCAATTTGCTGTCTGTTGTTTGCCTTGTTCGATCGCGGTAATGCTCTCTATGGATCTTCGTCGCCTGTGCTTCAACTCACTCCTTCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGAGTCGTTTTGGTAGAGTTCTTTGCGCCATGGTGCGGTCATTGTCAATCTCTAACACCAACTTGGGAGAAAGTTGCCAGTACTTTGAAAGGTATTGCTACTGTGGCAGCCATTGATGCTGACGCTCACAAGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTCGTTCCCGGGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAATTTGCTATCAAGCAGATAAAGGCACTGTTAAAGGATCGTTTGGATGGTAAAACAAGTGGCACAAAAAATGGAGGAGGATCCAGTGAGAAGAAGAAATCTGAGCCTAGTGCCTCTGTCGAACTAAACTCTAGCAACTTTGATGAGTTGGTCACTGAAAGCAAAGAACTTTGGATTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAACAATTTGAAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATGCTGAGCAGTCGATAAAGAGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTTCAGACAAAAGTAGCCCAGTACCTTATGAGGGTGCTAGATCTGCATCAGCTATCGAATCTTTTGCTCTGGAACAGCTAGAATCCAATGCTGGTCCTGCTGAAGTAACTGAACTAACTGGGCCGGATGTCATGGAAGATAAGTGTGGTTCTGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATTTTGGACTCAAAAGCTGAAGGAAGGAACAAGTATCTAGAGATGTTATTATCAGTTGCAGACAAGTTTAAGAAAGACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAGCAACCTGATTTGGAGAAGCGTGTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCAAAGAAAGGAGCTTATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGATTTCGTTAAGGAGGCTGCGAAAGGAGGAAAAGGGAATTTGCCTATAGACGGAACTATGGAGATAGTGAAGACAGAAGCTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTCACTTGAAGACCTCATGGGAAATGATGATGAAGCCTCCACTGAGTCCAAGGACGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

447

Amino Acids

48.4

Weight (kDa)

6.09

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	34 - 133	1.8e-30	Thioredoxin
Thioredoxin	PF00085	170 - 269	1e-29	Thioredoxin
Thioredoxin_6	PF13848	203 - 391	2.6e-08	Thioredoxin-like domain
Thioredox_PDIA6_C	PF24541	279 - 394	5.3e-08	PDIA6-like, C-terminal thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04980 AT2G32920
fragaria_vesca	FvH4_6g41940
malus_domestica	MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica	Prupe.3G208600_v2.0.a1
pyrus_communis	pycom09g04050
rosa_chinensis	RchiOBHm_Chr2g0157821
rosa_laevigata	RLG00000021023
rosa_multiflora	Rmu_sc0002441.1_g000014
rosa_roxburghii	Rroxscaffold_2G00091920
rosa_rugosa	Rorug02G0464000
rosa_samantha	Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana	Rw2G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	69, 186, 1134
AclWI	GGATC	4 cut(s)	94, 435, 465, 478
AcsI	RAATTY	2 cut(s)	1195, 1277
AcuI	CTGAAG	2 cut(s)	861, 963
AfaI	GTAC	3 cut(s)	17, 232, 762
AfiI	CCNNNNNNNGG	4 cut(s)	185, 590, 770, 1208
AgsI	TTSAA	7 cut(s)	107, 127, 147, 238, 643, 706, 1289
AleI	CACNNNNGTG	1 cut(s)	586
AluBI	AGCT	7 cut(s)	607, 611, 791, 817, 941, 1115, 1238
AluI	AGCT	7 cut(s)	607, 611, 791, 817, 941, 1115, 1238
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	4 cut(s)	94, 435, 465, 478
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	860
ApeKI	GCWGC	5 cut(s)	257, 629, 893, 1025, 1175
ApoI	RAATTY	2 cut(s)	1195, 1277
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	833, 860
AsuC2I	CCSGG	2 cut(s)	339, 340
AsuNHI	GCTAGC	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	1235, 1296
BbvI	GCAGC	5 cut(s)	269, 616, 880, 1012, 1162
BccI	CCATC	3 cut(s)	431, 1238, 1247
BceAI	ACGGC	1 cut(s)	1024
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BcnI	CCSGG	2 cut(s)	339, 340
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	7 cut(s)	498, 522, 608, 659, 777, 818, 962
BfmI	CTRYAG	1 cut(s)	1203
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	5 cut(s)	258, 630, 894, 1026, 1176
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	5 cut(s)	259, 631, 895, 1027, 1177
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	339, 340
Bme18I	GGWCC	1 cut(s)	833
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	833, 860
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	2 cut(s)	339, 340
BmrI	ACTGGG	2 cut(s)	752, 867
BmsI	GCATC	5 cut(s)	256, 364, 667, 794, 1258
BmtI	GCTAGC	1 cut(s)	611
BmuI	ACTGGG	2 cut(s)	752, 867
BpiI	GAAGAC	2 cut(s)	1235, 1296
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuMI	CCSGG	2 cut(s)	339, 340
BsaBI	GATNNNNATC	1 cut(s)	784
BsaJI	CCNNGG	5 cut(s)	179, 338, 361, 584, 1329
BsaXI	ACNNNNNCTCC	2 cut(s)	1248, 1278
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 590, 770, 1208
Bse1I	ACTGG	4 cut(s)	228, 474, 758, 862
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	1 cut(s)	784
BseDI	CCNNGG	5 cut(s)	179, 338, 361, 584, 1329
BseGI	GGATG	4 cut(s)	379, 442, 871, 1249
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	4 cut(s)	185, 590, 770, 1208
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	5 cut(s)	305, 483, 606, 672, 1314
BseNI	ACTGG	4 cut(s)	228, 474, 758, 862
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	5 cut(s)	269, 616, 880, 1012, 1162
BseYI	CCCAGC	1 cut(s)	1028
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	862
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	339, 863
BslI	CCNNNNNNNGG	4 cut(s)	185, 590, 770, 1208
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	862
BsoBI	CYCGRG	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	64, 86, 427, 470, 779
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	3 cut(s)	69, 186, 1134
BspANI	GGCC	1 cut(s)	862
BspCNI	CTCAG	5 cut(s)	304, 484, 607, 673, 1315
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	472
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	94, 435, 465, 478
BsrDI	GCAATG	1 cut(s)	1092
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	228, 474, 758, 862
BssECI	CCNNGG	5 cut(s)	179, 338, 361, 584, 1329
BssMI	GATC	5 cut(s)	64, 86, 427, 470, 779
BssT1I	CCWWGG	4 cut(s)	179, 361, 584, 1329
Bst4CI	ACNGT	3 cut(s)	28, 253, 420
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	6 cut(s)	132, 291, 492, 615, 681, 1323
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	379, 442, 871, 1249
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	5 cut(s)	67, 89, 430, 473, 782
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	5 cut(s)	64, 86, 427, 470, 779
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 266, 374, 782, 836, 1091, 1100
BstSCI	CCNGG	2 cut(s)	337, 338
BstSFI	CTRYAG	1 cut(s)	1203
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	5 cut(s)	269, 616, 880, 1012, 1162
BstV2I	GAAGAC	2 cut(s)	1235, 1296
BstX2I	RGATCY	3 cut(s)	86, 470, 779
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	3 cut(s)	86, 470, 779
BsuRI	GGCC	1 cut(s)	862
BtgI	CCRYGG	1 cut(s)	179
BtsCI	GGATG	4 cut(s)	379, 442, 871, 1249
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	5 cut(s)	416, 481, 543, 595, 1320
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	833, 860
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	16, 231, 761
CviAII	CATG	4 cut(s)	180, 665, 871, 1297
CviQI	GTAC	3 cut(s)	16, 231, 761
DdeI	CTNAG	6 cut(s)	132, 291, 492, 615, 681, 1323
DpnI	GATC	5 cut(s)	66, 88, 429, 472, 781
DpnII	GATC	5 cut(s)	64, 86, 427, 470, 779
Eco130I	CCWWGG	4 cut(s)	179, 361, 584, 1329
Eco47I	GGWCC	1 cut(s)	833
Eco57I	CTGAAG	2 cut(s)	861, 963
Eco88I	CYCGRG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	1277
EcoT14I	CCWWGG	4 cut(s)	179, 361, 584, 1329
ErhI	CCWWGG	4 cut(s)	179, 361, 584, 1329
FaeI	CATG	4 cut(s)	183, 668, 874, 1300
FalI	AAGNNNNNCTT	1 cut(s)	1322
FatI	CATG	4 cut(s)	179, 664, 870, 1296
Fnu4HI	GCNGC	5 cut(s)	258, 630, 894, 1026, 1176
FokI	GGATG	4 cut(s)	386, 449, 878, 1256
Fsp4HI	GCNGC	5 cut(s)	258, 630, 894, 1026, 1176
FspBI	CTAG	7 cut(s)	498, 522, 608, 659, 777, 818, 962
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	258, 630, 894, 1026, 1176
GsaI	CCCAGC	1 cut(s)	1032
HaeIII	GGCC	1 cut(s)	862
HapII	CCGG	2 cut(s)	339, 863
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	183, 668, 874, 1300
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	1236
HinfI	GANTC	7 cut(s)	153, 702, 717, 797, 821, 932, 1325
HpaII	CCGG	2 cut(s)	339, 863
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	2 cut(s)	493, 745
Hpy188III	TCNNGA	4 cut(s)	293, 614, 809, 962
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	5 cut(s)	126, 637, 643, 938, 942
HpyCH4III	ACNGT	3 cut(s)	28, 253, 420
HpyCH4V	TGCA	6 cut(s)	581, 600, 712, 785, 983, 1271
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 266, 374, 782, 836, 1091, 1100
HpyF3I	CTNAG	6 cut(s)	132, 291, 492, 615, 681, 1323
Hsp92II	CATG	4 cut(s)	183, 668, 874, 1300
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	5 cut(s)	64, 86, 427, 470, 779
LmnI	GCTCC	4 cut(s)	365, 616, 1112, 1126
Lsp1109I	GCAGC	5 cut(s)	269, 616, 880, 1012, 1162
LweI	GCATC	5 cut(s)	256, 364, 667, 794, 1258
MaeI	CTAG	7 cut(s)	498, 522, 608, 659, 777, 818, 962
MaeIII	GTNAC	2 cut(s)	541, 844
MalI	GATC	5 cut(s)	66, 88, 429, 472, 781
MboI	GATC	5 cut(s)	64, 86, 427, 470, 779
MboII	GAAGA	6 cut(s)	81, 493, 496, 887, 1240, 1301
MfeI	CAATTG	2 cut(s)	351, 670
MflI	RGATCY	3 cut(s)	86, 470, 779
MluCI	AATT	9 cut(s)	36, 121, 142, 351, 392, 637, 670, 1195, 1277
MlyI	GAGTC	3 cut(s)	162, 926, 1334
MmeI	TCCRAC	1 cut(s)	1045
MseI	TTAA	8 cut(s)	141, 324, 422, 993, 1097, 1128, 1146, 1167
MslI	CAYNNNNRTG	1 cut(s)	586
MspI	CCGG	2 cut(s)	339, 863
MspR9I	CCNGG	2 cut(s)	339, 340
MunI	CAATTG	2 cut(s)	351, 670
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	7 cut(s)	254, 266, 374, 782, 836, 1091, 1100
NciI	CCSGG	2 cut(s)	339, 340
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	64, 86, 427, 470, 779
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	4 cut(s)	183, 668, 874, 1300
NlaIV	GGNNCC	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	586
PfeI	GAWTC	4 cut(s)	702, 717, 797, 821
PkrI	GCNGC	5 cut(s)	259, 631, 895, 1027, 1177
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	3 cut(s)	161, 926, 1333
PpsI	GAGTC	3 cut(s)	161, 926, 1333
PspFI	CCCAGC	1 cut(s)	1028
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	833, 860
PsuI	RGATCY	3 cut(s)	86, 470, 779
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	17, 232, 762
RsaNI	GTAC	3 cut(s)	16, 231, 761
RseI	CAYNNNNRTG	1 cut(s)	586
SaqAI	TTAA	8 cut(s)	141, 324, 422, 993, 1097, 1128, 1146, 1167
SatI	GCNGC	5 cut(s)	258, 630, 894, 1026, 1176
Sau3AI	GATC	5 cut(s)	64, 86, 427, 470, 779
Sau96I	GGNCC	2 cut(s)	833, 860
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	3 cut(s)	162, 926, 1334
ScrFI	CCNGG	2 cut(s)	339, 340
SfaNI	GCATC	5 cut(s)	256, 364, 667, 794, 1258
SfcI	CTRYAG	1 cut(s)	1203
SinI	GGWCC	1 cut(s)	833
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	586
Sse9I	AATT	9 cut(s)	36, 121, 142, 351, 392, 637, 670, 1195, 1277
SsiI	CCGC	3 cut(s)	69, 186, 1134
SspMI	CTAG	7 cut(s)	498, 522, 608, 659, 777, 818, 962
StyD4I	CCNGG	2 cut(s)	337, 338
StyI	CCWWGG	4 cut(s)	179, 361, 584, 1329
TaaI	ACNGT	3 cut(s)	28, 253, 420
TaqI	TCGA	4 cut(s)	63, 510, 689, 795
TasI	AATT	9 cut(s)	36, 121, 142, 351, 392, 637, 670, 1195, 1277
TatI	WGTACW	2 cut(s)	15, 230
TfiI	GAWTC	4 cut(s)	702, 717, 797, 821
Tru1I	TTAA	8 cut(s)	141, 324, 422, 993, 1097, 1128, 1146, 1167
Tru9I	TTAA	8 cut(s)	141, 324, 422, 993, 1097, 1128, 1146, 1167
TscAI	CASTG	5 cut(s)	423, 481, 550, 602, 1327
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	5 cut(s)	257, 629, 893, 1025, 1175
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	1290, 1326
TspGWI	ACGGA	1 cut(s)	1224
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	5 cut(s)	423, 481, 550, 602, 1327
VpaK11BI	GGWCC	1 cut(s)	833
XapI	RAATTY	2 cut(s)	1195, 1277
XbaI	TCTAGA	1 cut(s)	961
XmaI	CCCGGG	1 cut(s)	338
XspI	CTAG	7 cut(s)	498, 522, 608, 659, 777, 818, 962
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.