Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014581

Physical Location & Seq

Genomic Coordinates Reverse (-)

21460735 .. 21464642

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGCCTCGAGAGGTTTCTGAATTGATTCGTAGAACAAATCTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAATGAGAATGAGAGGTAATCAATTTCGAGCTGTGTCAATCATCTTCTTAATTTGCTTCGTCTTCAGTGTCTGTGATGCACTGTACGGACCATCATCGCCAGTTCTTCAGCTAACTCCTTCCAACTTCAAGTCCAAGGTTCTGGACTCGAACAGAGTTGTTCTGGTTGAATTCTTTGCACCATGGTGCGGACATTGTCAAGCTCTAACTCCTATATGGGAGAAGGCGGCTACTGTCTTGAAGGGTGTGGCTACCGTGGCAGCTCTTGACGCTGATGCGCACAAGTCCCTTGCTCAGGAATATGGGATTAGAGGATTTCCAACAATAAAGGTGTTTGTACCTGGGAAACCTCCAGTTGACTATCAGGGAGCAAGGGATGTGAAACCCGTTGCAGAATTTGCACTCCAACAGATAAAGGTGTTGTTGAAGGACCGTTTAAGTGGAAAAGCAACAGGAGGACCAAGTGAAAAATCTGAACCTAATGCTTCAGTAGAATTAAATTCCCAGAATTTTGATGAATTGGTGGTTAAAAGTAAAGAACTCTGGATTGTGGAGTTCTTTGCACCTTGGTGTGGCCACTGCAAAAAATTGGCACCTGAGTGGAAGAAGGCCGCTAAAAACTTGCAGGGGAAGGTGAAGTTGGGACACGTTGACTGTGATGTAGAGAAGTCTCTGATGAGCAGGTTCAATGTTCAAGGATTCCCAACCATATTGATATTTGGAGCTGACAAAGATACCCCACTCCCCTATGAGGGTGCAAGGACTGCTAAAGCCATTGAATCATTTGCTCTTGAACAATTGGAAACAAATGTTGCACCTGCTGAAGTGACTGAGTTAACTGGCCCTGATGTCATGGAAGAGAAATGTGGTTCTGCTGCCATCTGTTTTGTTGCTTTCCTACCTGATATCTTGGATTCCAAGGCAGAAGGGAGGAACAAATACATTCAGCAGTTATTATCCGTTGCAGAGAAGTTCAAAAGGAGTCCCTATAGCTATGTCTGGGCAGCCGCTGGTAAGCAGCCAGACCTCGAGAATCGTGTAGGTGTTGGTGGTTATGGATATCCAGCATTGGTGGCCTTAAATGTGAAAAAAGGTGCTTATGCACCACTTAAGAGTGCATTTGAGCTTGATCAGATTATAGAATTTGTTAAGGAAGCCGGACGTGGAGGAAAGGGAAACTTGCCTTTGGACGGCACCCCCAACATTTCAAAGATTGAACCCTGGGATGGTAAAGATGGACAGATCATTGAAGAGGATGAGTTCTCCCTCGAAGAACTTATGGGCGGAGGAGATGAAACTACGAGCAAAGATGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

464

Amino Acids

51.11

Weight (kDa)

6.04

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04980 AT2G32920
fragaria_vesca	FvH4_6g41940
malus_domestica	MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica	Prupe.3G208600_v2.0.a1
pyrus_communis	pycom09g04050
rosa_chinensis	RchiOBHm_Chr2g0157821
rosa_laevigata	RLG00000021023
rosa_multiflora	Rmu_sc0002441.1_g000014
rosa_roxburghii	Rroxscaffold_2G00091920
rosa_rugosa	Rorug02G0464000
rosa_samantha	Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana	Rw2G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc16I	TGCGCA	1 cut(s)	351
Acc36I	ACCTGC	2 cut(s)	744, 898
AccB1I	GGYRCC	2 cut(s)	664, 1265
AciI	CCGC	5 cut(s)	261, 299, 684, 1080, 1356
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	5 cut(s)	242, 467, 571, 580, 1214
AcuI	CTGAAG	4 cut(s)	121, 164, 543, 915
AfaI	GTAC	2 cut(s)	158, 411
AfiI	CCNNNNNNNGG	7 cut(s)	260, 367, 644, 823, 824, 1262, 1298
AflII	CTTAAG	1 cut(s)	1181
AflIII	ACRYGT	1 cut(s)	718
AjiI	CACGTC	1 cut(s)	1235
AjnI	CCWGG	2 cut(s)	412, 1292
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AleI	CACNNNNGTG	3 cut(s)	256, 640, 670
AluBI	AGCT	7 cut(s)	104, 184, 275, 335, 797, 1065, 1198
AluI	AGCT	7 cut(s)	104, 184, 275, 335, 797, 1065, 1198
Alw26I	GTCTC	1 cut(s)	747
AlwNI	CAGNNNCTG	2 cut(s)	144, 1082
Ama87I	CYCGRG	2 cut(s)	6, 1100
AoxI	GGCC	4 cut(s)	646, 681, 913, 1146
ApeKI	GCWGC	4 cut(s)	332, 947, 1076, 1090
ApoI	RAATTY	5 cut(s)	242, 467, 571, 580, 1214
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	4 cut(s)	161, 502, 530, 914
AsuHPI	GGTGA	1 cut(s)	718
AvaI	CYCGRG	2 cut(s)	6, 1100
AvaII	GGWCC	3 cut(s)	161, 502, 530
BalI	TGGCCA	1 cut(s)	648
BanI	GGYRCC	2 cut(s)	664, 1265
BbsI	GAAGAC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	344, 934, 1088, 1102
BccI	CCATC	4 cut(s)	172, 959, 1292, 1301
BceAI	ACGGC	1 cut(s)	1279
BciT130I	CCWGG	2 cut(s)	414, 1294
BclI	TGATCA	1 cut(s)	1201
BcoDI	GTCTC	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	1060
BfrI	CTTAAG	1 cut(s)	1181
BfuAI	ACCTGC	2 cut(s)	744, 898
BisI	GCNGC	7 cut(s)	300, 333, 684, 948, 1077, 1080, 1091
BlsI	GCNGC	7 cut(s)	301, 334, 685, 949, 1078, 1081, 1092
Bme1390I	CCNGG	2 cut(s)	414, 1294
Bme18I	GGWCC	3 cut(s)	161, 502, 530
BmeT110I	CYCGRG	2 cut(s)	6, 1100
BmgBI	CACGTC	1 cut(s)	1235
BmgT120I	GGNCC	4 cut(s)	161, 502, 530, 914
BmiI	GGNNCC	2 cut(s)	666, 1267
BmrFI	CCNGG	2 cut(s)	414, 1294
BmsI	GCATC	2 cut(s)	139, 337
BpiI	GAAGAC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	8 cut(s)	207, 254, 327, 413, 638, 990, 1292, 1293
Bsc4I	CCNNNNNNNGG	7 cut(s)	260, 367, 644, 823, 824, 1262, 1298
Bse1I	ACTGG	3 cut(s)	173, 425, 916
BseBI	CCWGG	2 cut(s)	414, 1294
BseDI	CCNNGG	8 cut(s)	207, 254, 327, 413, 638, 990, 1292, 1293
BseGI	GGATG	3 cut(s)	454, 1303, 1333
BseLI	CCNNNNNNNGG	7 cut(s)	260, 367, 644, 823, 824, 1262, 1298
BseMII	CTCAG	4 cut(s)	55, 380, 660, 894
BseNI	ACTGG	3 cut(s)	173, 425, 916
BseRI	GAGGAG	1 cut(s)	1374
BseXI	GCAGC	4 cut(s)	344, 934, 1088, 1102
BshFI	GGCC	4 cut(s)	648, 683, 915, 1148
BshNI	GGYRCC	2 cut(s)	664, 1265
BsiHKCI	CYCGRG	2 cut(s)	6, 1100
BsiSI	CCGG	1 cut(s)	1230
BslFI	GGGAC	3 cut(s)	343, 729, 1041
BslI	CCNNNNNNNGG	7 cut(s)	260, 367, 644, 823, 824, 1262, 1298
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	3 cut(s)	343, 729, 1041
BsnI	GGCC	4 cut(s)	648, 683, 915, 1148
BsoBI	CYCGRG	2 cut(s)	6, 1100
Bsp143I	GATC	2 cut(s)	1201, 1314
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	5 cut(s)	261, 299, 684, 1080, 1356
BspANI	GGCC	4 cut(s)	648, 683, 915, 1148
BspCNI	CTCAG	4 cut(s)	54, 379, 661, 895
BspLI	GGNNCC	2 cut(s)	666, 1267
BspMI	ACCTGC	2 cut(s)	744, 898
BspT107I	GGYRCC	2 cut(s)	664, 1265
BspTI	CTTAAG	1 cut(s)	1181
BsrI	ACTGG	3 cut(s)	173, 425, 916
BssECI	CCNNGG	8 cut(s)	207, 254, 327, 413, 638, 990, 1292, 1293
BssMI	GATC	2 cut(s)	1201, 1314
BssT1I	CCWWGG	4 cut(s)	207, 254, 638, 990
Bst2UI	CCWGG	2 cut(s)	414, 1294
Bst4CI	ACNGT	5 cut(s)	156, 307, 328, 506, 728
Bst6I	CTCTTC	2 cut(s)	924, 1317
BstAFI	CTTAAG	1 cut(s)	1181
BstAPI	GCANNNNNTGC	2 cut(s)	470, 836
BstDEI	CTNAG	4 cut(s)	41, 366, 669, 903
BstDSI	CCRYGG	2 cut(s)	254, 327
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	454, 1303, 1333
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	1204, 1317
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	2 cut(s)	1201, 1314
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 341, 470, 836, 1145
BstNI	CCWGG	2 cut(s)	414, 1294
BstSCI	CCNGG	2 cut(s)	412, 1292
BstSFI	CTRYAG	1 cut(s)	1060
BstV1I	GCAGC	4 cut(s)	344, 934, 1088, 1102
BstV2I	GAAGAC	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	4 cut(s)	648, 683, 915, 1148
BtgI	CCRYGG	2 cut(s)	254, 327
BtgZI	GCGATG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	1235
BtsCI	GGATG	3 cut(s)	454, 1303, 1333
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	3 cut(s)	145, 152, 649
BveI	ACCTGC	2 cut(s)	744, 898
CaiI	CAGNNNCTG	2 cut(s)	144, 1082
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	161, 502, 530, 914
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	157, 410
CviAII	CATG	2 cut(s)	255, 925
CviQI	GTAC	2 cut(s)	157, 410
DdeI	CTNAG	4 cut(s)	41, 366, 669, 903
DpnI	GATC	2 cut(s)	1203, 1316
DpnII	GATC	2 cut(s)	1201, 1314
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	2 cut(s)	924, 1317
EarI	CTCTTC	2 cut(s)	924, 1317
EciI	GGCGGA	1 cut(s)	1371
Eco130I	CCWWGG	4 cut(s)	207, 254, 638, 990
Eco32I	GATATC	2 cut(s)	979, 1133
Eco47I	GGWCC	3 cut(s)	161, 502, 530
Eco57I	CTGAAG	4 cut(s)	121, 164, 543, 915
Eco88I	CYCGRG	2 cut(s)	6, 1100
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	412, 1292
EcoRV	GATATC	2 cut(s)	979, 1133
EcoT14I	CCWWGG	4 cut(s)	207, 254, 638, 990
ErhI	CCWWGG	4 cut(s)	207, 254, 638, 990
FaeI	CATG	2 cut(s)	258, 928
FalI	AAGNNNNNCTT	2 cut(s)	1235, 1267
FaqI	GGGAC	3 cut(s)	343, 729, 1041
FatI	CATG	2 cut(s)	254, 924
FbaI	TGATCA	1 cut(s)	1201
Fnu4HI	GCNGC	7 cut(s)	300, 333, 684, 948, 1077, 1080, 1091
FokI	GGATG	3 cut(s)	461, 1310, 1340
Fsp4HI	GCNGC	7 cut(s)	300, 333, 684, 948, 1077, 1080, 1091
FspAI	RTGCGCAY	1 cut(s)	351
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	7 cut(s)	300, 333, 684, 948, 1077, 1080, 1091
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	4 cut(s)	648, 683, 915, 1148
HapII	CCGG	1 cut(s)	1230
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	2 cut(s)	258, 928
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	3 cut(s)	430, 724, 909
HindII	GTYRAC	3 cut(s)	430, 724, 909
HinfI	GANTC	7 cut(s)	25, 218, 771, 851, 986, 1054, 1105
HpaI	GTTAAC	1 cut(s)	909
HpaII	CCGG	1 cut(s)	1230
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	3 cut(s)	430, 724, 909
Hpy188I	TCNGA	5 cut(s)	19, 44, 547, 747, 1206
Hpy188III	TCNNGA	8 cut(s)	8, 215, 310, 338, 368, 616, 863, 1102
Hpy8I	GTNNAC	3 cut(s)	430, 724, 909
HpyAV	CCTTC	7 cut(s)	201, 289, 307, 493, 673, 697, 992
HpyCH4III	ACNGT	5 cut(s)	156, 307, 328, 506, 728
HpyCH4IV	ACGT	2 cut(s)	720, 1234
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 341, 470, 836, 1145
HpyF3I	CTNAG	4 cut(s)	41, 366, 669, 903
HpySE526I	ACGT	2 cut(s)	720, 1234
Hsp92II	CATG	2 cut(s)	258, 928
HspAI	GCGC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	1201
KspAI	GTTAAC	1 cut(s)	909
Kzo9I	GATC	2 cut(s)	1201, 1314
LmnI	GCTCC	2 cut(s)	440, 794
Lsp1109I	GCAGC	4 cut(s)	344, 934, 1088, 1102
LweI	GCATC	2 cut(s)	139, 337
MaeII	ACGT	2 cut(s)	720, 1234
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	2 cut(s)	1203, 1316
MboI	GATC	2 cut(s)	1201, 1314
MboII	GAAGA	7 cut(s)	109, 127, 170, 688, 941, 1334, 1355
MfeI	CAATTG	1 cut(s)	869
MlsI	TGGCCA	1 cut(s)	648
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	212, 1063
MmeI	TCCRAC	3 cut(s)	219, 416, 502
Mox20I	TGGCCA	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	8 cut(s)	122, 509, 569, 600, 908, 1151, 1182, 1221
MslI	CAYNNNNRTG	3 cut(s)	256, 640, 670
Msp20I	TGGCCA	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	1082
MspCI	CTTAAG	1 cut(s)	1181
MspI	CCGG	1 cut(s)	1230
MspR9I	CCNGG	2 cut(s)	414, 1294
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	2 cut(s)	414, 1294
MwoI	GCNNNNNNNGC	5 cut(s)	329, 341, 470, 836, 1145
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	1201, 1314
NlaIII	CATG	2 cut(s)	258, 928
NlaIV	GGNNCC	2 cut(s)	666, 1267
NmuCI	GTSAC	1 cut(s)	898
NsbI	TGCGCA	1 cut(s)	351
OliI	CACNNNNGTG	3 cut(s)	256, 640, 670
PaeR7I	CTCGAG	2 cut(s)	6, 1100
PaqCI	CACCTGC	1 cut(s)	898
PasI	CCCWGGG	1 cut(s)	1293
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	5 cut(s)	25, 771, 851, 986, 1105
PflFI	GACNNNGTC	1 cut(s)	267
PkrI	GCNGC	7 cut(s)	301, 334, 685, 949, 1078, 1081, 1092
PleI	GAGTC	2 cut(s)	212, 1062
PpsI	GAGTC	2 cut(s)	212, 1062
Psp6I	CCWGG	2 cut(s)	412, 1292
PspGI	CCWGG	2 cut(s)	412, 1292
PspN4I	GGNNCC	2 cut(s)	666, 1267
PspPI	GGNCC	4 cut(s)	161, 502, 530, 914
PstNI	CAGNNNCTG	2 cut(s)	144, 1082
PsyI	GACNNNGTC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	158, 411
RsaNI	GTAC	2 cut(s)	157, 410
RseI	CAYNNNNRTG	3 cut(s)	256, 640, 670
SaqAI	TTAA	8 cut(s)	122, 509, 569, 600, 908, 1151, 1182, 1221
SatI	GCNGC	7 cut(s)	300, 333, 684, 948, 1077, 1080, 1091
Sau3AI	GATC	2 cut(s)	1201, 1314
Sau96I	GGNCC	4 cut(s)	161, 502, 530, 914
SchI	GAGTC	2 cut(s)	212, 1063
ScrFI	CCNGG	2 cut(s)	414, 1294
SfaNI	GCATC	2 cut(s)	139, 337
SfcI	CTRYAG	1 cut(s)	1060
Sfr274I	CTCGAG	2 cut(s)	6, 1100
SinI	GGWCC	3 cut(s)	161, 502, 530
SlaI	CTCGAG	2 cut(s)	6, 1100
SmiMI	CAYNNNNRTG	3 cut(s)	256, 640, 670
SmlI	CTYRAG	3 cut(s)	6, 1100, 1181
SmoI	CTYRAG	3 cut(s)	6, 1100, 1181
SsiI	CCGC	5 cut(s)	261, 299, 684, 1080, 1356
StyD4I	CCNGG	2 cut(s)	412, 1292
StyI	CCWWGG	4 cut(s)	207, 254, 638, 990
TaaI	ACNGT	5 cut(s)	156, 307, 328, 506, 728
TaiI	ACGT	2 cut(s)	723, 1237
TaqI	TCGA	5 cut(s)	7, 100, 221, 1101, 1341
TauI	GCSGC	3 cut(s)	302, 686, 1082
TfiI	GAWTC	5 cut(s)	25, 771, 851, 986, 1105
Tru1I	TTAA	8 cut(s)	122, 509, 569, 600, 908, 1151, 1182, 1221
Tru9I	TTAA	8 cut(s)	122, 509, 569, 600, 908, 1151, 1182, 1221
TscAI	CASTG	3 cut(s)	145, 159, 656
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	4 cut(s)	332, 947, 1076, 1090
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	2 cut(s)	603, 1380
TspGWI	ACGGA	2 cut(s)	174, 1021
TspRI	CASTG	3 cut(s)	145, 159, 656
Tth111I	GACNNNGTC	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	1181
VpaK11BI	GGWCC	3 cut(s)	161, 502, 530
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	5 cut(s)	242, 467, 571, 580, 1214
XhoI	CTCGAG	2 cut(s)	6, 1100
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.