Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014581

Physical Location & Seq

Genomic Coordinates Reverse (-)

78095220 .. 78099176

Gene Structure 3957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG552200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGAATGAGAGATAATCAATTTCGAGCTGTACCAATCTTCTTCTTCTTGTTCTTCTTCGTCTTCAATGGCTGTGATGCGCTTTACGGACCATCATCACCAGTGCTTCAGCTGACTCCCACCAACTTCAAGTCCAAGGTTCTGGACTCGAACCGAGTTGTTCTGGTTGAATTCTTTGCGCCGTGGTGTGGACATTGTCAAGCTCTGACTCCCATATGGGAGAAAGCGGCTACTGTGTTGAAGGGTGTGGCAACCGTAGCTGCCCTTGATGCTGATGCGCACAAGTCCCTTGCTCAGGAATATGGGATTAGAGGATTCCCGACAATAAAGGTGTTCGTACCTGGACAGCCTCCCGTTGATTATCAGGGAGCGAGAGAAGTGAAACCCATTGCAGAATTTGCAGTCAAACAGATTAAGGCACTATTGAAGGACCGCTTAAGTGGAAAAGCAACTGGAGGATCAAGTGAAAAACCTGAACCTAATGCTTCAGTAGAACTAAATTCCCAGAATTTTGATGAATTAGTTGTTAAAAGCAAAGATCTCTGGGTTGTGGAGTTTTTTGCGCCTTGGTGCGGGCACTGTAAAAAATTGGCACCTGAGTGGAAGAAGGCTGCCAAAAACTTGAAGGGAAAGGTGAAGTTGGGACACGTTGACTGTGATGCAGAGAAGTCTCTTATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATATTGGTATTTGGAGCTGACAAAGATAGCCCAGTACCTTATGAGGGTGCGAGGACTGCTTCAGCAATTGAATCATTTTCTCTCGAACAACTAGAAACAAATGTTGCACCTCCTGAAGTGACTGAGCTAACTGGCCCTGATGTATTGGAAGAGAAATGTGGTTCGGCCGCCATCTGTTTTGTGGCTTTTCTACCTGATATCTTGGATTCCAAGGCAGAAGGGAGGAACAAGTACCTTCAGCAGTTATTATCTGTTGCAGAGAAGTTCAAGAAGAGTCCGTATAGCTATGTCTGGGCAGCAGCTGGTAAGCAGCAAGACCTCGAGAATCGTGTAGGTGTTGGTGGTTATGGATATCCAGCATTGGTTGCCTTAAATGTGAAAAAAGGTGCTTATGCCCCACTTAAGAGTGCCTTCGAGCTTGATCAGATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

380

Amino Acids

41.71

Weight (kDa)

8.27

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	35 - 133	8.7e-30	Thioredoxin
OST3_OST6	PF04756	161 - 247	1e-05	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	164 - 262	9.5e-31	Thioredoxin
Thioredoxin_2	PF13098	180 - 253	2.2e-06	Thioredoxin-like domain
Thioredoxin_6	PF13848	197 - 370	7e-09	Thioredoxin-like domain
Thioredox_PDIA6_C	PF24541	270 - 379	8.9e-08	PDIA6-like, C-terminal thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04980 AT2G32920
fragaria_vesca	FvH4_6g41940
malus_domestica	MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica	Prupe.3G208600_v2.0.a1
pyrus_communis	pycom09g04050
rosa_chinensis	RchiOBHm_Chr2g0157821
rosa_laevigata	RLG00000021023
rosa_multiflora	Rmu_sc0002441.1_g000014
rosa_roxburghii	Rroxscaffold_2G00091920
rosa_rugosa	Rorug02G0464000
rosa_samantha	Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana	Rw2G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	592
AciI	CCGC	4 cut(s)	227, 433, 573, 876
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	4 cut(s)	170, 395, 499, 508
AcuI	CTGAAG	5 cut(s)	92, 471, 753, 843, 929
AfaI	GTAC	4 cut(s)	33, 339, 744, 941
AfiI	CCNNNNNNNGG	4 cut(s)	188, 295, 572, 752
AflII	CTTAAG	2 cut(s)	436, 1109
AflIII	ACRYGT	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	340
AleI	CACNNNNGTG	1 cut(s)	598
AluBI	AGCT	9 cut(s)	29, 112, 203, 260, 725, 835, 993, 1010, 1126
AluI	AGCT	9 cut(s)	29, 112, 203, 260, 725, 835, 993, 1010, 1126
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	1 cut(s)	1028
AoxI	GGCC	2 cut(s)	841, 873
ApeKI	GCWGC	5 cut(s)	260, 611, 1004, 1007, 1018
ApoI	RAATTY	4 cut(s)	170, 395, 499, 508
AspLEI	GCGC	4 cut(s)	82, 181, 280, 565
AspS9I	GGNCC	3 cut(s)	89, 430, 842
AsuHPI	GGTGA	2 cut(s)	90, 646
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	2 cut(s)	89, 430
BaeGI	GKGCMC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	5 cut(s)	247, 598, 1016, 1019, 1030
BccI	CCATC	2 cut(s)	100, 887
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	1129
BcoDI	GTCTC	1 cut(s)	675
BfaI	CTAG	1 cut(s)	800
BfrI	CTTAAG	2 cut(s)	436, 1109
BfuAI	ACCTGC	1 cut(s)	672
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	7 cut(s)	228, 261, 612, 876, 1005, 1008, 1019
BlsI	GCNGC	7 cut(s)	229, 262, 613, 877, 1006, 1009, 1020
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	89, 430
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	3 cut(s)	89, 430, 842
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	4 cut(s)	67, 259, 265, 649
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	135, 182, 566, 918
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 295, 572, 752
Bse1I	ACTGG	4 cut(s)	101, 457, 740, 844
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	135, 182, 566, 918
BseLI	CCNNNNNNNGG	4 cut(s)	188, 295, 572, 752
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	308, 588, 822
BseNI	ACTGG	4 cut(s)	101, 457, 740, 844
BseSI	GKGCMC	1 cut(s)	579
BseX3I	CGGCCG	1 cut(s)	873
BseXI	GCAGC	5 cut(s)	247, 598, 1016, 1019, 1030
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	2 cut(s)	843, 875
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	1028
BslFI	GGGAC	2 cut(s)	271, 657
BslI	CCNNNNNNNGG	4 cut(s)	188, 295, 572, 752
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	2 cut(s)	271, 657
BsnI	GGCC	2 cut(s)	843, 875
BsoBI	CYCGRG	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	458, 538, 1129, 1134
BspACI	CCGC	4 cut(s)	227, 433, 573, 876
BspANI	GGCC	2 cut(s)	843, 875
BspCNI	CTCAG	3 cut(s)	307, 589, 823
BspLI	GGNNCC	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	592
BspTI	CTTAAG	2 cut(s)	436, 1109
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	4 cut(s)	101, 457, 740, 844
BssECI	CCNNGG	4 cut(s)	135, 182, 566, 918
BssMI	GATC	4 cut(s)	458, 538, 1129, 1134
BssT1I	CCWWGG	3 cut(s)	135, 566, 918
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	235, 256, 581, 656
Bst6I	CTCTTC	2 cut(s)	852, 974
BstAFI	CTTAAG	2 cut(s)	436, 1109
BstAPI	GCANNNNNTGC	2 cut(s)	398, 1073
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	294, 597, 831
BstDSI	CCRYGG	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstHHI	GCGC	4 cut(s)	82, 181, 280, 565
BstKTI	GATC	4 cut(s)	461, 541, 1132, 1137
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	4 cut(s)	458, 538, 1129, 1134
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 269, 398, 764, 1073
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	247, 598, 1016, 1019, 1030
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	843, 875
BtgI	CCRYGG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	108, 577
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	1010
CfoI	GCGC	4 cut(s)	82, 181, 280, 565
Cfr13I	GGNCC	3 cut(s)	89, 430, 842
Csp6I	GTAC	4 cut(s)	32, 338, 743, 940
CviAII	CATG	1 cut(s)	1138
CviQI	GTAC	4 cut(s)	32, 338, 743, 940
DdeI	CTNAG	3 cut(s)	294, 597, 831
DpnI	GATC	4 cut(s)	460, 540, 1131, 1136
DpnII	GATC	4 cut(s)	458, 538, 1129, 1134
EaeI	YGGCCR	1 cut(s)	873
EagI	CGGCCG	1 cut(s)	873
Eam1104I	CTCTTC	2 cut(s)	852, 974
EarI	CTCTTC	2 cut(s)	852, 974
EclXI	CGGCCG	1 cut(s)	873
Eco130I	CCWWGG	3 cut(s)	135, 566, 918
Eco32I	GATATC	2 cut(s)	907, 1061
Eco47I	GGWCC	2 cut(s)	89, 430
Eco52I	CGGCCG	1 cut(s)	873
Eco57I	CTGAAG	5 cut(s)	92, 471, 753, 843, 929
Eco88I	CYCGRG	1 cut(s)	1028
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	2 cut(s)	907, 1061
EcoT14I	CCWWGG	3 cut(s)	135, 566, 918
ErhI	CCWWGG	3 cut(s)	135, 566, 918
FaeI	CATG	1 cut(s)	1141
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 1103, 1135
FaqI	GGGAC	2 cut(s)	271, 657
FatI	CATG	1 cut(s)	1137
FauI	CCCGC	1 cut(s)	566
FauNDI	CATATG	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	1129
Fnu4HI	GCNGC	7 cut(s)	228, 261, 612, 876, 1005, 1008, 1019
Fsp4HI	GCNGC	7 cut(s)	228, 261, 612, 876, 1005, 1008, 1019
FspAI	RTGCGCAY	1 cut(s)	279
FspBI	CTAG	1 cut(s)	800
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	4 cut(s)	81, 180, 279, 564
GluI	GCNGC	7 cut(s)	228, 261, 612, 876, 1005, 1008, 1019
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	843, 875
HhaI	GCGC	4 cut(s)	82, 181, 280, 565
Hin1II	CATG	1 cut(s)	1141
Hin6I	GCGC	4 cut(s)	80, 179, 278, 563
HinP1I	GCGC	4 cut(s)	80, 179, 278, 563
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	9 cut(s)	115, 146, 208, 315, 699, 779, 914, 982, 1033
HphI	GGTGA	2 cut(s)	90, 646
Hpy166II	GTNNAC	2 cut(s)	191, 652
Hpy188I	TCNGA	2 cut(s)	207, 1134
Hpy188III	TCNNGA	7 cut(s)	143, 296, 319, 791, 821, 976, 1030
Hpy8I	GTNNAC	2 cut(s)	191, 652
HpyAV	CCTTC	7 cut(s)	235, 421, 601, 619, 920, 953, 1129
HpyCH4III	ACNGT	4 cut(s)	235, 256, 581, 656
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	5 cut(s)	392, 401, 662, 815, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 269, 398, 764, 1073
HpyF3I	CTNAG	3 cut(s)	294, 597, 831
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	1 cut(s)	1141
HspAI	GCGC	4 cut(s)	80, 179, 278, 563
Ksp22I	TGATCA	1 cut(s)	1129
Kzo9I	GATC	4 cut(s)	458, 538, 1129, 1134
LmnI	GCTCC	2 cut(s)	368, 722
Lsp1109I	GCAGC	5 cut(s)	247, 598, 1016, 1019, 1030
LweI	GCATC	4 cut(s)	67, 259, 265, 649
MaeI	CTAG	1 cut(s)	800
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	4 cut(s)	460, 540, 1131, 1136
MboI	GATC	4 cut(s)	458, 538, 1129, 1134
MboII	GAAGA	9 cut(s)	31, 34, 37, 46, 49, 55, 616, 869, 991
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	8 cut(s)	20, 170, 395, 499, 508, 518, 587, 774
MlyI	GAGTC	4 cut(s)	109, 140, 202, 991
MnlI	CCTC	8 cut(s)	305, 360, 449, 745, 753, 828, 924, 1037
MseI	TTAA	5 cut(s)	414, 437, 528, 1079, 1110
MslI	CAYNNNNRTG	1 cut(s)	598
MspA1I	CMGCKG	2 cut(s)	112, 1010
MspCI	CTTAAG	2 cut(s)	436, 1109
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	5 cut(s)	257, 269, 398, 764, 1073
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	4 cut(s)	458, 538, 1129, 1134
NlaIII	CATG	1 cut(s)	1141
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	826
NsbI	TGCGCA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	1028
PfeI	GAWTC	5 cut(s)	315, 699, 779, 914, 1033
PflFI	GACNNNGTC	1 cut(s)	195
PkrI	GCNGC	7 cut(s)	229, 262, 613, 877, 1006, 1009, 1020
PleI	GAGTC	4 cut(s)	109, 140, 202, 990
PpsI	GAGTC	4 cut(s)	109, 140, 202, 990
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	3 cut(s)	89, 430, 842
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	195
PvuII	CAGCTG	2 cut(s)	112, 1010
RsaI	GTAC	4 cut(s)	33, 339, 744, 941
RsaNI	GTAC	4 cut(s)	32, 338, 743, 940
RseI	CAYNNNNRTG	1 cut(s)	598
SaqAI	TTAA	5 cut(s)	414, 437, 528, 1079, 1110
SatI	GCNGC	7 cut(s)	228, 261, 612, 876, 1005, 1008, 1019
Sau3AI	GATC	4 cut(s)	458, 538, 1129, 1134
Sau96I	GGNCC	3 cut(s)	89, 430, 842
SchI	GAGTC	4 cut(s)	109, 140, 202, 991
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	4 cut(s)	67, 259, 265, 649
Sfr274I	CTCGAG	1 cut(s)	1028
SinI	GGWCC	2 cut(s)	89, 430
SlaI	CTCGAG	1 cut(s)	1028
SmiMI	CAYNNNNRTG	1 cut(s)	598
SmlI	CTYRAG	3 cut(s)	436, 1028, 1109
SmoI	CTYRAG	3 cut(s)	436, 1028, 1109
Sse9I	AATT	8 cut(s)	20, 170, 395, 499, 508, 518, 587, 774
SsiI	CCGC	4 cut(s)	227, 433, 573, 876
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	1 cut(s)	800
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	3 cut(s)	135, 566, 918
TaaI	ACNGT	4 cut(s)	235, 256, 581, 656
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	5 cut(s)	25, 149, 792, 1029, 1122
TasI	AATT	8 cut(s)	20, 170, 395, 499, 508, 518, 587, 774
TauI	GCSGC	2 cut(s)	230, 878
TfiI	GAWTC	5 cut(s)	315, 699, 779, 914, 1033
Tru1I	TTAA	5 cut(s)	414, 437, 528, 1079, 1110
Tru9I	TTAA	5 cut(s)	414, 437, 528, 1079, 1110
TscAI	CASTG	2 cut(s)	108, 584
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	5 cut(s)	260, 611, 1004, 1007, 1018
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	2 cut(s)	102, 975
TspRI	CASTG	2 cut(s)	108, 584
Tth111I	GACNNNGTC	1 cut(s)	195
Vha464I	CTTAAG	2 cut(s)	436, 1109
VpaK11BI	GGWCC	2 cut(s)	89, 430
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	4 cut(s)	170, 395, 499, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XhoI	CTCGAG	1 cut(s)	1028
XspI	CTAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.