FvH4_6g41940

Belongs to the protein disulfide isomerase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32831068 .. 32834806
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41940.t1

Sequence Viewer

Length: 1314 bp
ATGAGAATGAGAGAGAGTCAATTCCGAGCTCTACCAATCTTGTTGGTGTTCTTCTTCGTCTTCAATGCCTGTGATGCACTCTACGGTCCATCATCACCAGTGCTTCAGCTGACTCCCTCCAACTTCAAGTCCAAGGTTCTGGACTCGAACAGAGTTGTTCTGGTTGAGTTCTTTGCGCCGTGGTGTGGGCATTGTAGAGCTCTGACTCCTATATGGGAGAAAGTCGCTACTGTGTTGAAGGGTGTGGCCACCGTAGCTGCTCTTGATGCTGATGCGCATAAGTCCCTTGCTCAGGATTATGGGATTCAAGGATTCCCAACAATAAAGGTGTTCGTACCTGGAAAGCCACCAGTTGATTATCAGGGAGCAAGAGATGTGAAACCTATTGCAGAATTTGCTCTCTCACAGATTAAGGCACTGTTGAAGGACCGGTTAAGTGGAAAATCAACAGGAGGATCAAGTGAAAAACCTGAGCCTAATGCTTCAGTAGAACTAAATTCCAAGAACTTTGATGAACTAGTTGTTAAAAGTAAAGAACTCTGGATTGTGGAGTTCTTTGCACCTTGGTGTGGGCACTGTAAAAAATTGGCACCTGAGTGGAAGAAGGCTGCCAAAAACTTGAAGGGGAAGGTGAAGTTGGGACACGTGGACTGTGATGCAGAGCAGTCACTTATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATATTAGTATTTGGAGCTGACAAAGATAGCCCAGTACCGTATGAGGGTGCAAGGACTGCTTCAGCCATTGAATCGTTTGCTCTCGAACGACTAGAAACAAATGTTGCACCTCCTGAAGTGACTGAGCTAACTGGCCCTGATGTCTTGGAAGAGAAATGTGGTTCAGCAGCCATCTGTTTCGTCGCTTTTCTACCTGATATCTTGGATTCAAAGGCTGAAGGGAGGAACAAGTACCTTCACCAGTTATTATCCGTTGCAGAGAAGTTCAAAAGGAGTCCATATAGCTATGTCTGGGCGGCAGCTGGTAAGCAACAAGACCTTGAGAATCTTGTAGGTGTTGGTGGTTACGGGTATCCTGCATTGGTGGCCTTAAATGTGAAAAAAGGTGTTTATGCCCCTCTTAAGAGTGCGTTCGAGCTTGATCAGATTACCGAATTTGTGAGAGAAGCTGGGCGTGGTGGAAAGGGAAACTTGCCTCTGAACGGCACCCCCAACATAGTGAAGAGCGAACCATGGGATGGTAAGGATGGAGAGATCGTTGAAGAGGATGAGTTCTCCCTTGAAGAACTGATGGGGGAAGATACTAATAGCAAGGATGAATTGAGATAA

Protein Analysis

438

Amino Acids

47.92

Weight (kDa)

5.65

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 34 - 132 2.8e-29 Thioredoxin
Thioredoxin PF00085 163 - 262 8e-31 Thioredoxin
Thioredoxin_2 PF13098 178 - 252 3.3e-06 Thioredoxin-like domain
Thioredoxin_6 PF13848 196 - 383 1e-09 Thioredoxin-like domain
Thioredox_PDIA6_C PF24541 269 - 383 6.9e-09 PDIA6-like, C-terminal thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04980 AT2G32920
fragaria_vesca FvH4_6g41940
malus_domestica MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica Prupe.3G208600_v2.0.a1
pyrus_communis pycom09g04050
rosa_chinensis RchiOBHm_Chr2g0157821
rosa_laevigata RLG00000021023
rosa_multiflora Rmu_sc0002441.1_g000014
rosa_roxburghii Rroxscaffold_2G00091920
rosa_rugosa Rorug02G0464000
rosa_samantha Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana Rw2G043760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 669
AccB1I GGYRCC 2 cut(s) 589, 1190
AccB7I CCANNNNNTGG 1 cut(s) 1223
AciI CCGC 1 cut(s) 1001
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 3 cut(s) 392, 496, 1139
AcuI CTGAAG 5 cut(s) 89, 468, 750, 840, 942
AcvI CACGTG 1 cut(s) 646
AfaI GTAC 3 cut(s) 336, 741, 938
AfiI CCNNNNNNNGG 6 cut(s) 185, 292, 569, 749, 1187, 1223
AflII CTTAAG 1 cut(s) 1106
AflIII ACRYGT 1 cut(s) 643
AgeI ACCGGT 1 cut(s) 429
AhlI ACTAGT 1 cut(s) 517
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AleI CACNNNNGTG 2 cut(s) 565, 595
Alw21I GWGCWC 2 cut(s) 31, 202
AlwI GGATC 1 cut(s) 463
AoxI GGCC 3 cut(s) 246, 838, 1071
ApeKI GCWGC 4 cut(s) 257, 608, 872, 1004
ApoI RAATTY 3 cut(s) 392, 496, 1139
AsiGI ACCGGT 1 cut(s) 429
AspLEI GCGC 2 cut(s) 178, 277
AspS9I GGNCC 3 cut(s) 86, 427, 839
AsuHPI GGTGA 3 cut(s) 87, 643, 935
AvaII GGWCC 2 cut(s) 86, 427
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 2 cut(s) 589, 1190
BanII GRGCYC 2 cut(s) 31, 202
BbrPI CACGTG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 31, 202
BbvI GCAGC 4 cut(s) 244, 595, 884, 1016
BccI CCATC 5 cut(s) 97, 884, 1217, 1226, 1270
BceAI ACGGC 2 cut(s) 163, 1204
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 1068
BclI TGATCA 1 cut(s) 1126
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 2 cut(s) 518, 797
BfrI CTTAAG 1 cut(s) 1106
BfuAI ACCTGC 1 cut(s) 669
BfuI GTATCC 1 cut(s) 1068
BisI GCNGC 5 cut(s) 258, 609, 873, 1002, 1005
BlsI GCNGC 5 cut(s) 259, 610, 874, 1003, 1006
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 86, 427
BmgT120I GGNCC 3 cut(s) 86, 427, 839
BmiI GGNNCC 2 cut(s) 591, 1192
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 4 cut(s) 64, 256, 262, 646
BmuI ACTGGG 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 52
Bpu10I CCTNAGC 2 cut(s) 291, 471
BpuEI CTTGAG 1 cut(s) 1046
BsaAI YACGTR 1 cut(s) 646
BsaJI CCNNGG 4 cut(s) 132, 179, 563, 1217
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 1227, 1257
Bsc4I CCNNNNNNNGG 6 cut(s) 185, 292, 569, 749, 1187, 1223
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 5 cut(s) 98, 350, 737, 841, 946
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 4 cut(s) 132, 179, 563, 1217
BseGI GGATG 4 cut(s) 1228, 1237, 1258, 1306
BseLI CCNNNNNNNGG 6 cut(s) 185, 292, 569, 749, 1187, 1223
BseMII CTCAG 4 cut(s) 305, 462, 585, 819
BseNI ACTGG 5 cut(s) 98, 350, 737, 841, 946
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 4 cut(s) 244, 595, 884, 1016
BseYI CCCAGC 1 cut(s) 1154
BshFI GGCC 3 cut(s) 248, 840, 1073
BshNI GGYRCC 2 cut(s) 589, 1190
BshTI ACCGGT 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 31, 202
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 2 cut(s) 268, 654
BslI CCNNNNNNNGG 6 cut(s) 185, 292, 569, 749, 1187, 1223
BsmFI GGGAC 2 cut(s) 268, 654
BsnI GGCC 3 cut(s) 248, 840, 1073
Bsp1286I GDGCHC 3 cut(s) 31, 202, 576
Bsp143I GATC 3 cut(s) 455, 1126, 1239
Bsp19I CCATGG 1 cut(s) 1217
BspACI CCGC 1 cut(s) 1001
BspANI GGCC 3 cut(s) 248, 840, 1073
BspCNI CTCAG 4 cut(s) 304, 463, 586, 820
BspLI GGNNCC 2 cut(s) 591, 1192
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 1202
BspT107I GGYRCC 2 cut(s) 589, 1190
BspTI CTTAAG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 5 cut(s) 98, 350, 737, 841, 946
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 4 cut(s) 132, 179, 563, 1217
BssMI GATC 3 cut(s) 455, 1126, 1239
BssT1I CCWWGG 3 cut(s) 132, 563, 1217
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 7 cut(s) 86, 232, 253, 420, 578, 653, 744
Bst6I CTCTTC 3 cut(s) 849, 1202, 1242
BstAFI CTTAAG 1 cut(s) 1106
BstAPI GCANNNNNTGC 2 cut(s) 395, 761
BstBAI YACGTR 1 cut(s) 646
BstDEI CTNAG 4 cut(s) 291, 471, 594, 828
BstDSI CCRYGG 2 cut(s) 179, 1217
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 1228, 1237, 1258, 1306
BstHHI GCGC 2 cut(s) 178, 277
BstKTI GATC 3 cut(s) 458, 1129, 1242
BstMBI GATC 3 cut(s) 455, 1126, 1239
BstMWI GCNNNNNNNGC 6 cut(s) 74, 254, 266, 395, 761, 1070
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 244, 595, 884, 1016
BstV2I GAAGAC 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 1068
BsuRI GGCC 3 cut(s) 248, 840, 1073
BtgI CCRYGG 2 cut(s) 179, 1217
BtsCI GGATG 4 cut(s) 1228, 1237, 1258, 1306
BtsIMutI CAGTG 3 cut(s) 105, 416, 574
BveI ACCTGC 1 cut(s) 669
CfoI GCGC 2 cut(s) 178, 277
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 86, 427, 839
Csp6I GTAC 3 cut(s) 335, 740, 937
CspAI ACCGGT 1 cut(s) 429
CviAII CATG 1 cut(s) 1218
CviQI GTAC 3 cut(s) 335, 740, 937
DdeI CTNAG 4 cut(s) 291, 471, 594, 828
DpnI GATC 3 cut(s) 457, 1128, 1241
DpnII GATC 3 cut(s) 455, 1126, 1239
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 849, 1202, 1242
EarI CTCTTC 3 cut(s) 849, 1202, 1242
Ecl136II GAGCTC 2 cut(s) 29, 200
Eco130I CCWWGG 3 cut(s) 132, 563, 1217
Eco24I GRGCYC 2 cut(s) 31, 202
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 2 cut(s) 86, 427
Eco53kI GAGCTC 2 cut(s) 29, 200
Eco57I CTGAAG 5 cut(s) 89, 468, 750, 840, 942
Eco72I CACGTG 1 cut(s) 646
EcoICRI GAGCTC 2 cut(s) 29, 200
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 337
EcoRV GATATC 1 cut(s) 904
EcoT14I CCWWGG 3 cut(s) 132, 563, 1217
EcoT38I GRGCYC 2 cut(s) 31, 202
ErhI CCWWGG 3 cut(s) 132, 563, 1217
FaeI CATG 1 cut(s) 1221
FalI AAGNNNNNCTT 4 cut(s) 748, 780, 1160, 1192
FaqI GGGAC 2 cut(s) 268, 654
FatI CATG 1 cut(s) 1217
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 5 cut(s) 258, 609, 873, 1002, 1005
FokI GGATG 3 cut(s) 1235, 1244, 1265
FriOI GRGCYC 2 cut(s) 31, 202
Fsp4HI GCNGC 5 cut(s) 258, 609, 873, 1002, 1005
FspAI RTGCGCAY 1 cut(s) 276
FspBI CTAG 2 cut(s) 518, 797
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 2 cut(s) 177, 276
GluI GCNGC 5 cut(s) 258, 609, 873, 1002, 1005
GsaI CCCAGC 1 cut(s) 1158
HaeIII GGCC 3 cut(s) 248, 840, 1073
HapII CCGG 1 cut(s) 430
HhaI GCGC 2 cut(s) 178, 277
Hin1II CATG 1 cut(s) 1221
Hin6I GCGC 2 cut(s) 176, 275
HinP1I GCGC 2 cut(s) 176, 275
HpaII CCGG 1 cut(s) 430
HphI GGTGA 3 cut(s) 87, 643, 935
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 26, 204, 1131, 1185
Hpy188III TCNNGA 6 cut(s) 140, 263, 293, 541, 788, 818
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 890
HpyAV CCTTC 7 cut(s) 232, 418, 598, 616, 622, 917, 950
HpyCH4III ACNGT 7 cut(s) 86, 232, 253, 420, 578, 653, 744
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 8 cut(s) 77, 389, 560, 659, 755, 812, 962, 1064
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 254, 266, 395, 761, 1070
HpyF3I CTNAG 4 cut(s) 291, 471, 594, 828
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 1 cut(s) 1221
HspAI GCGC 2 cut(s) 176, 275
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 3 cut(s) 455, 1126, 1239
LguI GCTCTTC 1 cut(s) 1202
LmnI GCTCC 2 cut(s) 365, 719
Lsp1109I GCAGC 4 cut(s) 244, 595, 884, 1016
LweI GCATC 4 cut(s) 64, 256, 262, 646
MaeI CTAG 2 cut(s) 518, 797
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 666, 823, 1049
MalI GATC 3 cut(s) 457, 1128, 1241
MboI GATC 3 cut(s) 455, 1126, 1239
MboII GAAGA 9 cut(s) 43, 46, 52, 613, 866, 1219, 1259, 1280, 1295
MhlI GDGCHC 3 cut(s) 31, 202, 576
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 6 cut(s) 20, 392, 496, 584, 1139, 1304
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 5 cut(s) 25, 106, 137, 199, 988
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 8 cut(s) 127, 446, 742, 825, 921, 1113, 1191, 1243
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MseI TTAA 5 cut(s) 411, 434, 525, 1076, 1107
MslI CAYNNNNRTG 2 cut(s) 565, 595
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 109, 1007
MspCI CTTAAG 1 cut(s) 1106
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 6 cut(s) 74, 254, 266, 395, 761, 1070
NcoI CCATGG 1 cut(s) 1217
NdeII GATC 3 cut(s) 455, 1126, 1239
NlaIII CATG 1 cut(s) 1221
NlaIV GGNNCC 2 cut(s) 591, 1192
NmuCI GTSAC 2 cut(s) 666, 823
NsbI TGCGCA 1 cut(s) 276
OliI CACNNNNGTG 2 cut(s) 565, 595
PciSI GCTCTTC 1 cut(s) 1202
PfeI GAWTC 6 cut(s) 304, 312, 696, 776, 911, 1030
PflMI CCANNNNNTGG 1 cut(s) 1223
PinAI ACCGGT 1 cut(s) 429
PkrI GCNGC 5 cut(s) 259, 610, 874, 1003, 1006
PleI GAGTC 5 cut(s) 24, 106, 137, 199, 987
PmaCI CACGTG 1 cut(s) 646
PmlI CACGTG 1 cut(s) 646
PpsI GAGTC 5 cut(s) 24, 106, 137, 199, 987
Ppu21I YACGTR 1 cut(s) 646
Psp124BI GAGCTC 2 cut(s) 31, 202
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 591, 1192
PspPI GGNCC 3 cut(s) 86, 427, 839
PvuII CAGCTG 2 cut(s) 109, 1007
RsaI GTAC 3 cut(s) 336, 741, 938
RsaNI GTAC 3 cut(s) 335, 740, 937
RseI CAYNNNNRTG 2 cut(s) 565, 595
SacI GAGCTC 2 cut(s) 31, 202
SapI GCTCTTC 1 cut(s) 1202
SaqAI TTAA 5 cut(s) 411, 434, 525, 1076, 1107
SatI GCNGC 5 cut(s) 258, 609, 873, 1002, 1005
Sau3AI GATC 3 cut(s) 455, 1126, 1239
Sau96I GGNCC 3 cut(s) 86, 427, 839
SchI GAGTC 5 cut(s) 25, 106, 137, 199, 988
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 3 cut(s) 31, 202, 576
SfaNI GCATC 4 cut(s) 64, 256, 262, 646
SinI GGWCC 2 cut(s) 86, 427
SmiMI CAYNNNNRTG 2 cut(s) 565, 595
SmlI CTYRAG 2 cut(s) 1025, 1106
SmoI CTYRAG 2 cut(s) 1025, 1106
SpeI ACTAGT 1 cut(s) 517
Sse9I AATT 6 cut(s) 20, 392, 496, 584, 1139, 1304
SsiI CCGC 1 cut(s) 1001
SspI AATATT 1 cut(s) 708
SspMI CTAG 2 cut(s) 518, 797
SstI GAGCTC 2 cut(s) 31, 202
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 3 cut(s) 132, 563, 1217
TaaI ACNGT 7 cut(s) 86, 232, 253, 420, 578, 653, 744
TaiI ACGT 1 cut(s) 648
TaqI TCGA 3 cut(s) 146, 789, 1119
TasI AATT 6 cut(s) 20, 392, 496, 584, 1139, 1304
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 6 cut(s) 304, 312, 696, 776, 911, 1030
Tru1I TTAA 5 cut(s) 411, 434, 525, 1076, 1107
Tru9I TTAA 5 cut(s) 411, 434, 525, 1076, 1107
TscAI CASTG 3 cut(s) 105, 423, 581
TseFI GTSAC 2 cut(s) 666, 823
TseI GCWGC 4 cut(s) 257, 608, 872, 1004
Tsp45I GTSAC 2 cut(s) 666, 823
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 3 cut(s) 105, 423, 581
Van91I CCANNNNNTGG 1 cut(s) 1223
Vha464I CTTAAG 1 cut(s) 1106
VpaK11BI GGWCC 2 cut(s) 86, 427
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 3 cut(s) 392, 496, 1139
XspI CTAG 2 cut(s) 518, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.